ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24n06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT019179.1| Zea mays clone Contig850.F mRNA sequence 92 1e-15
2gb|AY105043.1| Zea mays PCO069007 mRNA sequence 84 2e-13
3ref|XM_466654.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
4dbj|AK058418.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
6dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
7dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
8ref|XM_865238.1| PREDICTED: Bos taurus similar to Sec5 protein, ... 40 3.3
9ref|XM_875450.1| PREDICTED: Bos taurus similar to Sec5 protein, ... 40 3.3
10ref|XM_875377.1| PREDICTED: Bos taurus similar to Sec5 protein, ... 40 3.3
11gb|AC153000.5| Medicago truncatula clone mth2-94c2, complete seq... 40 3.3
12dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 3.3
13gb|S44857.1| rpoD4=RNA polymerase sigma factor homolog [Synechoc... 40 3.3
14emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 3.3
15gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 3.3
16dbj|AB024710.1| Synechococcus PCC7942 gene for group 2 sigma fac... 40 3.3 
>gb|BT019179.1| Zea mays clone Contig850.F mRNA sequence
          Length = 922

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                       
Query: 122 tacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaagc 181
           ||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||  || 
Sbjct: 686 tacaatggaagagagtaaccgcggaggtacttggagtcgaccttcgattcacggaccagt 627

                                                 
Query: 182 gccgcccgacctgttctggcgacctcacatatgccata 219
           ||| | || || |||||||||||||| || ||||||||
Sbjct: 626 gccactcgtccagttctggcgacctcgcagatgccata 589
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>gb|AY105043.1| Zea mays PCO069007 mRNA sequence
          Length = 1380

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                        
Query: 122  tacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaagc 181
            |||| ||||||||||||||||||||||||||||||||| ||| | ||||| ||||  || 
Sbjct: 1140 tacagtggaagagagtagccgcggaggtacttggagtccaccttcgattcgcggaccagt 1081

                                                  
Query: 182  gccgcccgacctgttctggcgacctcacatatgccata 219
            ||  | || || ||||||||||||||||| ||||||||
Sbjct: 1080 gctactcgtccagttctggcgacctcacagatgccata 1043
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>ref|XM_466654.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1883

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 109/131 (83%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 120  attacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaa 179
            ||||||| ||||  |||||||| || ||||||||||| || || | |||||| ||||  |
Sbjct: 1571 attacaacggaaaggagtagccacgaaggtacttggaatcgacaccggattcgcggacca 1512

                                                                        
Query: 180  gcgccgcccgacctgttctggcgacctcacatatgccataaggnttccaacagtttttgn 239
            ||||| | || |||||||||||||||||||| |||||||||||  ||||||||  |||| 
Sbjct: 1511 gcgccactcgccctgttctggcgacctcacagatgccataaggc-tccaacagcctttgt 1453

                       
Query: 240  agtgcaaccat 250
            | |||||||||
Sbjct: 1452 aatgcaaccat 1442
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>dbj|AK058418.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D05, full
            insert sequence
          Length = 1883

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 109/131 (83%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 120  attacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaa 179
            ||||||| ||||  |||||||| || ||||||||||| || || | |||||| ||||  |
Sbjct: 1571 attacaacggaaaggagtagccacgaaggtacttggaatcgacaccggattcgcggacca 1512

                                                                        
Query: 180  gcgccgcccgacctgttctggcgacctcacatatgccataaggnttccaacagtttttgn 239
            ||||| | || |||||||||||||||||||| |||||||||||  ||||||||  |||| 
Sbjct: 1511 gcgccactcgccctgttctggcgacctcacagatgccataaggc-tccaacagcctttgt 1453

                       
Query: 240  agtgcaaccat 250
            | |||||||||
Sbjct: 1452 aatgcaaccat 1442
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                            
Query: 120      attacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaa 179
                ||||||| ||||  |||||||| || ||||||||||| || || | |||||| ||||  |
Sbjct: 23909823 attacaacggaaaggagtagccacgaaggtacttggaatcgacaccggattcgcggacca 23909764

                                           
Query: 180      gcgccgcccgacctgttctggcgacct 206
                ||||| | || ||||||||||||||||
Sbjct: 23909763 gcgccactcgccctgttctggcgacct 23909737
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                          
Query: 120    attacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaa 179
              ||||||| ||||  |||||||| || ||||||||||| || || | |||||| ||||  |
Sbjct: 131489 attacaacggaaaggagtagccacgaaggtacttggaatcgacaccggattcgcggacca 131430

                                         
Query: 180    gcgccgcccgacctgttctggcgacct 206
              ||||| | || ||||||||||||||||
Sbjct: 131429 gcgccactcgccctgttctggcgacct 131403
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                         
Query: 120   attacaatggaagagagtagccgcggaggtacttggagtcaaccctggattcacggagaa 179
             ||||||| ||||  |||||||| || ||||||||||| || || | |||||| ||||  |
Sbjct: 43787 attacaacggaaaggagtagccacgaaggtacttggaatcgacaccggattcgcggacca 43728

                                        
Query: 180   gcgccgcccgacctgttctggcgacct 206
             ||||| | || ||||||||||||||||
Sbjct: 43727 gcgccactcgccctgttctggcgacct 43701
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>ref|XM_865238.1| PREDICTED: Bos taurus similar to Sec5 protein, transcript variant 2
            (LOC513431), mRNA
          Length = 3881

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gcccgacctgttctggcgac 204
            ||||||||||||||||||||
Sbjct: 3060 gcccgacctgttctggcgac 3041
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>ref|XM_875450.1| PREDICTED: Bos taurus similar to Sec5 protein, transcript variant 6
            (LOC513431), mRNA
          Length = 3869

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gcccgacctgttctggcgac 204
            ||||||||||||||||||||
Sbjct: 3048 gcccgacctgttctggcgac 3029
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>ref|XM_875377.1| PREDICTED: Bos taurus similar to Sec5 protein, transcript variant 5
            (LOC513431), mRNA
          Length = 3377

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gcccgacctgttctggcgac 204
            ||||||||||||||||||||
Sbjct: 2556 gcccgacctgttctggcgac 2537
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>gb|AC153000.5| Medicago truncatula clone mth2-94c2, complete sequence
          Length = 97390

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 128   ggaagagagtagccgcggaggtacttggagtc 159
             ||||||||||| || ||||||| |||||||||
Sbjct: 89713 ggaagagagtaaccacggaggtgcttggagtc 89744
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 77      aaccaagtgacccttcttgg 96
               ||||||||||||||||||||
Sbjct: 1069556 aaccaagtgacccttcttgg 1069537
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>gb|S44857.1| rpoD4=RNA polymerase sigma factor homolog [Synechococcus,
          PCC7942, Genomic, 144 nt]
          Length = 144

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 77 aaccaagtgacccttcttgg 96
          ||||||||||||||||||||
Sbjct: 31 aaccaagtgacccttcttgg 12
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     gcgccgcccgacctgttctg 199
               ||||||||||||||||||||
Sbjct: 3664223 gcgccgcccgacctgttctg 3664204
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     aaccaagtgacccttcttgg 96
              ||||||||||||||||||||
Sbjct: 551323 aaccaagtgacccttcttgg 551342
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>dbj|AB024710.1| Synechococcus PCC7942 gene for group 2 sigma factor RpoD4, complete
           cds
          Length = 1621

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  aaccaagtgacccttcttgg 96
           ||||||||||||||||||||
Sbjct: 634 aaccaagtgacccttcttgg 615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,476,828
Number of Sequences: 3902068
Number of extensions: 1476828
Number of successful extensions: 20697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20655
Number of HSP's gapped (non-prelim): 41
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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