ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25c05 |
|---|---|
| Clone Library Name | barley_pub |
>RS3_ICTPU (Q90YS2) 40S ribosomal protein S3| Length = 245 Score = 93.2 bits (230), Expect = 3e-19 Identities = 44/57 (77%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PKEE Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>RS3_RAT (P62909) 40S ribosomal protein S3| Length = 243 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_MOUSE (P62908) 40S ribosomal protein S3| Length = 243 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS32_XENLA (P47835) 40S ribosomal protein S3-B (S1B)| Length = 246 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS31_XENLA (P02350) 40S ribosomal protein S3-A (S1A)| Length = 246 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_AMBME (P79891) 40S ribosomal protein S3| Length = 253 Score = 91.7 bits (226), Expect = 8e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_PONPY (Q5R465) 40S ribosomal protein S3| Length = 243 Score = 91.7 bits (226), Expect = 8e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_HUMAN (P23396) 40S ribosomal protein S3| Length = 243 Score = 91.7 bits (226), Expect = 8e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_BOVIN (Q3T169) 40S ribosomal protein S3| Length = 243 Score = 91.7 bits (226), Expect = 8e-19 Identities = 43/57 (75%), Positives = 47/57 (82%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN Y+D AVRHVLLRQGVLGIKVKIML WDP GK+GP PLPD V+I PK+E Sbjct: 160 SGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_DROME (Q06559) 40S ribosomal protein S3| Length = 246 Score = 85.5 bits (210), Expect = 5e-17 Identities = 39/63 (61%), Positives = 47/63 (74%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDEL 264 SG P N+Y++ A RHVLLRQGVLGIKVK+ML +DPK K+GP PLPD V++ PKEE Sbjct: 162 SGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIY 221 Query: 263 RPP 255 P Sbjct: 222 ETP 224
>RS3_MANSE (P48153) 40S ribosomal protein S3| Length = 243 Score = 81.6 bits (200), Expect = 8e-16 Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEED-E 267 SG P N+Y++ A RHVLLRQGVLGIKVKIML WD +GK GP P PD + + PK+E Sbjct: 161 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAP 220 Query: 266 LRPPALIEV*TPSSASRP 213 L P + I P+ +P Sbjct: 221 LEPTSDIRSLAPAPLPQP 238
>RS3_CAEEL (P48152) 40S ribosomal protein S3| Length = 247 Score = 78.2 bits (191), Expect = 9e-15 Identities = 38/57 (66%), Positives = 44/57 (77%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEE 273 SG PVN+YI AVRHV LRQGV+GIKVKIML +DP+G+ GP LPD V I P+EE Sbjct: 162 SGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEE 218
>RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13)| Length = 239 Score = 75.1 bits (183), Expect = 7e-14 Identities = 40/65 (61%), Positives = 48/65 (73%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDEL 264 SGQPVN++ID A RHVL+RQGVLGIKVKIM D K + GP LPD VTI PKEE+ + Sbjct: 159 SGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPI 216 Query: 263 RPPAL 249 P++ Sbjct: 217 LAPSV 221
>RS3_SCHPO (O60128) 40S ribosomal protein S3| Length = 249 Score = 68.6 bits (166), Expect = 7e-12 Identities = 35/63 (55%), Positives = 44/63 (69%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDEL 264 SGQP ++ID+A RHVLLRQGVLG+KVKIML P+ K LPD+V + PKEE+ + Sbjct: 162 SGQPAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPI 218 Query: 263 RPP 255 P Sbjct: 219 TKP 221
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3| Length = 228 Score = 61.6 bits (148), Expect = 8e-10 Identities = 29/56 (51%), Positives = 38/56 (67%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 276 SG V +YI+ V +QGV+GI+V+IML +DP+G LGP PLPD +TI P E Sbjct: 171 SGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>RS3_METKA (Q8TX35) 30S ribosomal protein S3P| Length = 227 Score = 35.8 bits (81), Expect = 0.049 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -3 Query: 440 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE-EDEL 264 G+P +EY+ + + G +G+ V+IM P LPD + I PP+E EDEL Sbjct: 163 GEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVEDEL 213 Query: 263 R 261 + Sbjct: 214 K 214
>IL2RB_PANTR (Q38J84) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.25 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -3 Query: 371 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 276 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>IL2RB_HUMAN (P14784) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (p75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.25 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -3 Query: 371 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 276 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1)| Length = 304 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPD 303 +G+P E +D+ V +++ G +G++VKI + P LPD Sbjct: 154 NGEPAEEIVDSGVGVAVMKLGTIGVRVKI---------IPPNAELPD 191
>IL2RB_MACFA (Q38J85) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -3 Query: 371 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 276 ++ ++ DWDP+ LGP TP +PDLV P E Sbjct: 459 LQERVPRDWDPQP-LGPPTPGVPDLVDFQPRPE 490
>RS3_PYRHO (O59424) 30S ribosomal protein S3P| Length = 210 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = -3 Query: 440 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDEL 264 G P + LL+ GV+G+KV IM P LPD + I E+E+ Sbjct: 155 GNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIVEKPAEEEV 204
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -3 Query: 341 PKGKLGPTTPLPDLVTIHPPKEEDELRPPAL 249 P ++ +PLP + + PP EE L PPAL Sbjct: 646 PPPEVSRLSPLPVVSRLSPPPEESPLSPPAL 676
>CBID_CHRVO (Q7NXR0) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 377 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/56 (41%), Positives = 27/56 (48%) Frame = +3 Query: 225 TTGSLDLNQSRGAQLVLLLRGVDGDEVRQGGGRAKFALGVPVKHNLHLDTKNALSE 392 TTGS + A L+LLL GVD DEV F L VPV+ LD +E Sbjct: 23 TTGSCATAAVKAA-LMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLDENTVRAE 77
>RS3_METTH (O26116) 30S ribosomal protein S3P| Length = 258 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -3 Query: 440 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPK 279 G+P +++ V L+ GVLG+ V+IM P LPD V I P+ Sbjct: 154 GEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKVEIEDPR 198
>RT03_ORYSA (P46773) Mitochondrial ribosomal protein S3| Length = 538 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -3 Query: 428 NEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGK 330 N+ ID A+ V R G+ G+KV+I + KG+ Sbjct: 498 NQKIDYALAEVSTRNGISGVKVRISYSQNKKGR 530
>RS3_PYRAB (Q9V1U1) 30S ribosomal protein S3P| Length = 210 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = -3 Query: 440 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDEL 264 G P + LL+ GV+G+KV IM P LPD + I E+E+ Sbjct: 155 GNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIIEKPVEEEV 204
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -3 Query: 350 DWDPKGKLGPTTPLPDLVTIHP 285 DW+P GK P LPD V IHP Sbjct: 157 DWEPSGKAEPR--LPDRVYIHP 176
>RS3_PYRFU (Q8U004) 30S ribosomal protein S3P| Length = 210 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = -3 Query: 440 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDEL 264 G P + LL+ GV+G+KV IM P LPD + I E+E+ Sbjct: 155 GNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPGARLPDEIEIIEKPVEEEV 204
>RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P| Length = 305 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = -3 Query: 443 SGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE-EDE 267 +G+P +D+ V +++ G +G++VKI + P LPD ++ E ED Sbjct: 154 NGEPAESIVDSGVGTAVMKLGTIGVQVKI---------IPPEAELPDDFEVYEDIEVEDF 204 Query: 266 LRPP 255 + P Sbjct: 205 VEEP 208
>MURB_VIBPA (Q87KP5) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 347 Score = 28.5 bits (62), Expect = 7.9 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = -3 Query: 422 YIDAAVRHVLLRQG-VLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDELRPPALI 246 Y D+ +H L + V I +K+ W PK + GP +P E+EL P A+ Sbjct: 162 YRDSVFKHDLYEKCFVTAIGLKLPKRWTPKNQYGPLQNIP----------ENELSPNAIF 211 Query: 245 E 243 E Sbjct: 212 E 212
>SSRP_BACCR (Q815L5) SsrA-binding protein| Length = 155 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 93 WQHNIEALHINFCKEGNQTLHSPLVTR 173 W HN +HIN ++GN+ H PL TR Sbjct: 59 WVHN---MHINTYEQGNRFNHDPLRTR 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,797,845 Number of Sequences: 219361 Number of extensions: 1113077 Number of successful extensions: 3145 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3141 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
