ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 377 e-101
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 377 e-101
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 335 4e-89
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 212 3e-52
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 212 3e-52
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 153 3e-34
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 153 3e-34
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 127 2e-26
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 127 2e-26
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
13dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
14dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
15dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
16dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
18dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 127 2e-26
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 127 2e-26
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 115 6e-23
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 9e-22
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 96 6e-17
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 72 8e-10
24dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 72 8e-10
25gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 62 8e-07
26gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 62 8e-07
27gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 62 8e-07
28gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 62 8e-07
29gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 2.9
30dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 2.9
31emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 2.9 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  377 bits (190), Expect = e-101
 Identities = 198/202 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttagagatatattancaaaacatgcccagcaatcgcttggatgcgatgcggacttaggta 60
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7732 ttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggta 7673

                                                                        
Query: 61   ggtaaaacatcngatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7672 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 7613

                                                                        
Query: 121  cgctccttgccgttgggtcgtagttctnggcattttggtcggtgcaaccttccggcacgg 180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7612 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 7553

                                  
Query: 181  gcaaagnaccttgctgtgctcc 202
            |||||| |||||||||||||||
Sbjct: 7552 gcaaagtaccttgctgtgctcc 7531
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  377 bits (190), Expect = e-101
 Identities = 198/202 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttagagatatattancaaaacatgcccagcaatcgcttggatgcgatgcggacttaggta 60
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 ttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggta 1313

                                                                        
Query: 61   ggtaaaacatcngatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1253

                                                                        
Query: 121  cgctccttgccgttgggtcgtagttctnggcattttggtcggtgcaaccttccggcacgg 180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1252 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 1193

                                  
Query: 181  gcaaagnaccttgctgtgctcc 202
            |||||| |||||||||||||||
Sbjct: 1192 gcaaagtaccttgctgtgctcc 1171
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  335 bits (169), Expect = 4e-89
 Identities = 198/205 (96%), Gaps = 3/205 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttagagatatattancaaaacatgcccagcaatcgcttggatgcgatgcggacttag-gt 59
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1681 ttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgt 1622

                                                                        
Query: 60   aggtaaaacatcngatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-c 118
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1621 aggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttc 1562

                                                                        
Query: 119  gtcgctccttgccgttgggtcgtagttctnggcattttggtcggtgcaaccttccggca- 177
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 1561 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcat 1502

                                     
Query: 178  cgggcaaagnaccttgctgtgctcc 202
            ||||||||| |||||||||||||||
Sbjct: 1501 cgggcaaagtaccttgctgtgctcc 1477
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  212 bits (107), Expect = 3e-52
 Identities = 177/199 (88%), Gaps = 7/199 (3%)
 Strand = Plus / Minus

                                                                       
Query: 7   atatattancaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 60
           |||||||| |||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 61  ggtaaaacatcngatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 120
           | ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 121 cgctccttgccgttgggtcgtagttctnggcattttggtcggtgcaaccttccggcacgg 180
           | ||||| |||||||||||| |||||| |||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                              
Query: 181 gcaaagnaccttgctgtgc 199
           |||||| ||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgc 549
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  212 bits (107), Expect = 3e-52
 Identities = 177/199 (88%), Gaps = 7/199 (3%)
 Strand = Plus / Minus

                                                                        
Query: 7    atatattancaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 60
            |||||||| |||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 61   ggtaaaacatcngatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 120
            | ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 121  cgctccttgccgttgggtcgtagttctnggcattttggtcggtgcaaccttccggcacgg 180
            | ||||| |||||||||||| |||||| |||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                               
Query: 181  gcaaagnaccttgctgtgc 199
            |||||| ||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgc 1399
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  153 bits (77), Expect = 3e-34
 Identities = 111/123 (90%)
 Strand = Plus / Minus

                                                                        
Query: 80   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 139
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 140  gtagttctnggcattttggtcggtgcaaccttccggcacgggcaaagnaccttgctgtgc 199
            | |||||| |||||   ||||||| |||||||||||||| |||||||  ||||| |||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

               
Query: 200  tcc 202
            |||
Sbjct: 1407 tcc 1405
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  153 bits (77), Expect = 3e-34
 Identities = 111/123 (90%)
 Strand = Plus / Minus

                                                                        
Query: 80   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 139
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 140  gtagttctnggcattttggtcggtgcaaccttccggcacgggcaaagnaccttgctgtgc 199
            | |||||| |||||   ||||||| |||||||||||||| |||||||  ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

               
Query: 200  tcc 202
            |||
Sbjct: 1369 tcc 1367



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 24   gcccagcaatcgcttggatgcgatgcgg 51
            |||||||| ||||||| |||||||||||
Sbjct: 1552 gcccagcagtcgcttgtatgcgatgcgg 1525
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                          
Query: 89     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 149    ggcattttggtcggtgcaaccttccggcacgggca 183
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 107    gcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttggtcggtgca 166
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 167    accttccggcacggg 181
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                         
Query: 89    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 149   ggcattttggtcggtgcaaccttccggcacgggca 183
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 107   gcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttggtcggtgca 166
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 167   accttccggcacggg 181
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 89       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 149      ggcattttggtcggtgcaaccttccggcacgggca 183
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 107      gcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttggtcggtgca 166
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 167      accttccggcacggg 181
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 89       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 149      ggcattttggtcggtgcaaccttccggcacgggca 183
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 107      gcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttggtcggtgca 166
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 167      accttccggcacggg 181
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  115 bits (58), Expect = 6e-23
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                       
Query: 95  aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcatt 154
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 155 ttggtcggtgcaaccttccggcacgggca 183
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  111 bits (56), Expect = 9e-22
 Identities = 86/95 (90%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 89   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| 
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 149  ggcattttggtcggtgcaaccttccggcacgggca 183
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 89  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||| 
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 149 ggcattttggtcggtgcaaccttccggcacgggca 183
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                           
Query: 89      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| | 
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 149     ggcattttggtcggtgcaaccttccggcacgggca 183
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                         
Query: 89    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctn 148
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| | 
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 149   ggcattttggtcggtgcaaccttccggcacgggca 183
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 99   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttgg 158
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||   ||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 159  tcggtgcaaccttc 172
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 99   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttgg 158
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||   ||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 159  tcggtgcaaccttc 172
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 99   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttgg 158
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||   ||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 159  tcggtgcaaccttc 172
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 99   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctnggcattttgg 158
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||   ||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 159  tcggtgcaaccttc 172
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 98   ggtgtaaaggcagctgccgtcgtcgctc 125
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    aaacatgcccagcaatcgcttgga 41
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tggcatgcttaaaaggtgta 103
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 944,393
Number of Sequences: 3902068
Number of extensions: 944393
Number of successful extensions: 56367
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56210
Number of HSP's gapped (non-prelim): 133
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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