ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25b24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BYR2_SCHPO (P28829) Protein kinase byr2 (EC 2.7.11.25) (Protein ... 32 1.2
2SSP1_BOMMO (P09179) Sex-specific storage-protein 1 precursor (SP... 30 4.7
3PKN2_CLOPE (Q8XJL8) Probable serine/threonine protein kinase CPE... 30 6.1
4GMA12_SCHPO (Q09174) Alpha-1,2-galactosyltransferase (EC 2.4.1.-) 30 6.1

>BYR2_SCHPO (P28829) Protein kinase byr2 (EC 2.7.11.25) (Protein kinase ste8)|
           (MAPK kinase kinase) (MAPKKK)
          Length = 659

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 622 PEQEPNFIRSPSPHGPSATTRKGANYVERQNSEMS 518
           P   P+FI  PSP  P++TT +  N +E    + S
Sbjct: 357 PGSSPSFIEQPSPISPTSTTSEDTNTLEEDTDDQS 391



to top

>SSP1_BOMMO (P09179) Sex-specific storage-protein 1 precursor (SP 1)|
           (Methionine-rich storage protein)
          Length = 747

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 562 RKGANYVERQNSEMSYYADDEDANRKKYTKRGTYRHKFLRMLLPFW 425
           RKG      QN  MSY+ +D D N   Y         +L M  PFW
Sbjct: 215 RKGVRRSLSQNDVMSYFMEDVDLNTYMY---------YLHMNYPFW 251



to top

>PKN2_CLOPE (Q8XJL8) Probable serine/threonine protein kinase CPE1738 (EC|
           2.7.11.1)
          Length = 685

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 640 TIATKFPEQEPNFIRSPSPHGPSATTRKGANYVERQNSEMSYYADDEDANRKK 482
           TI++K  E E  F R  SP     T    +   E    +  YY DDED + ++
Sbjct: 276 TISSKSAEDEDQFTRVMSPVVVPNTETNNSEPDEDDEDDDEYYEDDEDEDEEE 328



to top

>GMA12_SCHPO (Q09174) Alpha-1,2-galactosyltransferase (EC 2.4.1.-)|
          Length = 375

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 592 PSPHGPSATTRKGANYVERQNSEMSYYADDEDANRKKYTKRGTYRHKFL 446
           P P         G+N+    NS +  +A     NR++Y +R  Y+ +FL
Sbjct: 97  PHPDNSKIVILMGSNFQNDANSPLHPFAQSIIKNRREYAERHGYKFEFL 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,363,289
Number of Sequences: 219361
Number of extensions: 1717625
Number of successful extensions: 4633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4632
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top