Clone Information

BLAST Search Result

Clone Name	rbags25b23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009477.1\| Triticum aestivum clone wr1.pk0034.f4:fis, full i...	646	0.0
2	dbj\|AK103345.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	355	1e-94
3	dbj\|AB004461.1\| Oryza sativa mRNA for DNA polymerase alpha catal...	355	1e-94
4	ref\|NM_190772.1\| Oryza sativa (japonica cultivar-group), predic...	353	5e-94
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
6	dbj\|AP003286.3\| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
7	dbj\|AP005272.2\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	44	0.57
8	gb\|AC144861.3\| Mus musculus BAC clone RP23-63D4 from chromosome ...	42	2.3
9	gb\|AC104442.2\| Homo sapiens chromosome 3 clone RP11-905F6, compl...	42	2.3
10	gb\|AC103644.15\| Mus musculus chromosome 7, clone RP24-361F3, com...	42	2.3
11	gb\|AC122495.4\| Mus musculus BAC clone RP24-397P10 from 9, comple...	42	2.3
12	gb\|AC011595.13\| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Ca...	42	2.3
13	dbj\|AP002364.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	2.3
14	gb\|AC126453.5\| Mus musculus BAC clone RP23-244A6 from chromosome...	40	9.0
15	gb\|AC137583.7\| Mus musculus chromosome 13, clone RP23-140F24, co...	40	9.0
16	gb\|AC163353.3\| Mus musculus BAC clone RP23-55G7 from chromosome ...	40	9.0
17	gb\|AC093476.6\| Mus musculus chromosome 6, clone RP23-55C15, comp...	40	9.0
18	emb\|BX927195.18\| Zebrafish DNA sequence from clone CH211-124E6 i...	40	9.0
19	emb\|CR848795.6\| Zebrafish DNA sequence from clone DKEY-117A8 in ...	40	9.0
20	gb\|AC131711.3\| Mus musculus BAC clone RP23-192M18 from 6, comple...	40	9.0
21	gb\|AC003985.2\| Homo sapiens PAC clone RP5-978I12 from 7, complet...	40	9.0
22	gb\|CP000001.1\| Bacillus cereus E33L, complete genome	40	9.0
23	emb\|AL357084.12\| Human DNA sequence from clone RP11-471B18 on ch...	40	9.0
24	emb\|AL137011.9\| Human DNA sequence from clone RP4-662A9 on chrom...	40	9.0
25	emb\|BX294162.23\| Zebrafish DNA sequence from clone CH211-270C5 i...	40	9.0
26	emb\|BX276114.6\| Zebrafish DNA sequence from clone CH211-176L11 i...	40	9.0
27	ref\|NM_204700.1\| Gallus gallus cripto, FRL-1, cryptic family 1 (...	40	9.0
28	gb\|AC010243.7\| Homo sapiens chromosome 5 clone CTC-361G14, compl...	40	9.0
29	gb\|AC067859.7\| Homo sapiens chromosome 18, clone RP11-569D6, com...	40	9.0
30	gb\|AC010748.5\| Homo sapiens BAC clone CTD-2532L16 from 16, compl...	40	9.0
31	ref\|XM_679578.1\| PREDICTED: Danio rerio similar to ATP-binding c...	40	9.0
32	gb\|AC020979.6\| Homo sapiens chromosome 5 clone RP1_166C2, comple...	40	9.0
33	emb\|BX539338.4\| Zebrafish DNA sequence from clone DKEY-240P9 in ...	40	9.0
34	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
35	gb\|AF282984.1\|AF282984 Gallus gallus CRYPTIC mRNA, complete cds	40	9.0
36	gb\|AC092289.3\| Homo sapiens chromosome 16 clone CTD-2305H1, comp...	40	9.0
37	gb\|AC010888.12\| Homo sapiens BAC clone RP11-418N16 from 2, compl...	40	9.0
38	gb\|AC006466.3\|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p...	40	9.0
39	gb\|AF228762.1\|AF228761S2 Gallus gallus CRIPTO-related factor 1 g...	40	9.0
40	gb\|AF228760.1\|AF228760 Gallus gallus CRIPTO-related factor 1 mRN...	40	9.0
41	dbj\|AP003951.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
42	dbj\|AP003527.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
43	emb\|BX004880.9\| Zebrafish DNA sequence from clone CH211-69B7 in ...	40	9.0
44	emb\|AL731782.15\| Mouse DNA sequence from clone RP23-180G3 on chr...	40	9.0
45	emb\|CR388225.18\| Zebrafish DNA sequence from clone CH211-193C1 i...	40	9.0
46	gb\|AC157605.1\| Dasypus novemcinctus, clone Dasypus novemcinctus-...	40	9.0
47	dbj\|AK113127.1\| Ciona intestinalis cDNA, clone:ciad008l11, full ...	40	9.0
48	gb\|AE017194.1\| Bacillus cereus ATCC 10987, complete genome	40	9.0
49	gb\|AC145956.4\| Gallus gallus BAC clone CH261-14N1 from chromosom...	40	9.0
50	gb\|AC140356.3\| Mus musculus BAC clone RP23-216B19 from 6, comple...	40	9.0
51	gb\|L14433.1\| Caenorhabditis elegans cosmid C50C3, complete sequence	40	9.0
52	emb\|AL844551.3\| Mouse DNA sequence from clone RP23-117M21 on chr...	40	9.0
53	emb\|AL772344.4\| Mouse DNA sequence from clone RP23-235J15 on chr...	40	9.0

>gb|BT009477.1| Triticum aestivum clone wr1.pk0034.f4:fis, full insert mRNA
           sequence
          Length = 2511

 Score =  646 bits (326), Expect = 0.0
 Identities = 396/420 (94%)
 Strand = Plus / Minus

                                                                       
Query: 235 tgctcaggtcaacaatgcttgagattacagcaaacagtggcttatcagattgacactgct 294
           ||||||| ||| || ||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 900 tgctcagatcagcactgcttgagattacggcaaacagtagctcatcagattgacactgct 841

                                                                       
Query: 295 agatctgtcaattgaacccatccaaaagcacatctgtcacggattttctgaatctccaga 354
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 840 agatctgtcaattgaacccatccgaaagcacatctgtctcggattttctgaatctccaga 781

                                                                       
Query: 355 aatgccaagcttatggtttggtttaatactgcaaactctttctcaaagggaagccgaatc 414
           |||||  ||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 780 aatgcggagcttattgtttggtttaatactgcaaactctttctcaaaaggaagccgcatc 721

                                                                       
Query: 415 ttctggtccaacttctcaagacagcgggctgcatcaagtacataacaaaagtaggacaat 474
           |||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct: 720 ttctggtccaacttatcaagacaccgggttgcatcaagtacatagcaaaagtaggacaat 661

                                                                       
Query: 475 tgcctgtatagatctgcctctgtgtactgtctgactagacggccgttgcattgtggatag 534
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 660 tgcctgtatagatctgcctctgtgtactgtcttactagacggccgttgcattgtggatag 601

                                                                       
Query: 535 ttcgggcagatggttcctctctcagaatcccccatcactctaaggttcactatgtgagtt 594
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 600 ttcgggcagatggttcctctctcagaatcccccatcactctaaggttcacaatgtgagtt 541

                                                                       
Query: 595 gaatatttgcaaccctcgtcatcacacatcancaaacctttatnataccgattgatgaaa 654
           ||||||||||||||||||||||| |||||||  |||||||| | ||||||||||||||||
Sbjct: 540 gaatatttgcaaccctcgtcatcgcacatcagtaaacctttgtaataccgattgatgaaa 481



 Score =  212 bits (107), Expect = 1e-51
 Identities = 123/127 (96%), Gaps = 1/127 (0%)
 Strand = Plus / Minus

                                                                        
Query: 13   atggatgctacatatttacaacagtagtacaatatacactttgaaaatctagggatggca 72
            |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1146 atggatgcaacatatttacaacagtagtacaatatacacttcgaaaat-tagggatggca 1088

                                                                        
Query: 73   caaaggagggtctctgaaacaactggttagaacatttgtatttaaatgcaacatgatgtg 132
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 ccaaggagggtctctgaaacaactggttagaacatttgtatttaaatgcaacatgatgtg 1028

                   
Query: 133  ggcaact 139
            |||||||
Sbjct: 1027 ggcaact 1021



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 151 atcatttggcttccagttcctttcaccttcaacagcagatcaagtttcaacaac 204
           ||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 972 atcatctggtttccagttcctttcaccttcaacaacagatctagtttcaacaac 919

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>dbj|AK103345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126D04, full
           insert sequence
          Length = 3587

 Score =  355 bits (179), Expect = 1e-94
 Identities = 327/377 (86%)
 Strand = Plus / Plus

                                                                       
Query: 278 atcagattgacactgctagatctgtcaattgaacccatccaaaagcacatctgtcacgga 337
           |||||||||| | ||| |||||  |||| |||||||| ||||| ||||||||||| ||||
Sbjct: 342 atcagattgatattgcaagatccttcaactgaacccagccaaatgcacatctgtctcgga 401

                                                                       
Query: 338 ttttctgaatctccagaaatgccaagcttatggtttggtttaatactgcaaactctttct 397
           ||||||||| |||||  ||||||||| | || |||||| ||||| | ||||| |||||||
Sbjct: 402 ttttctgaacctccattaatgccaagttaatagtttggcttaatgccgcaaattctttct 461

                                                                       
Query: 398 caaagggaagccgaatcttctggtccaacttctcaagacagcgggctgcatcaagtacat 457
           |||| ||||||||   |||||||||||||||||||||||| || | |||||||| |||||
Sbjct: 462 caaaaggaagccgcgccttctggtccaacttctcaagacatcgagttgcatcaactacat 521

                                                                       
Query: 458 aacaaaagtaggacaattgcctgtatagatctgcctctgtgtactgtctgactagacggc 517
           | |||||||| |||||||||||||||||||||||||| || |||||||| |||||  |||
Sbjct: 522 agcaaaagtatgacaattgcctgtatagatctgcctccgtatactgtctcactaggtggc 581

                                                                       
Query: 518 cgttgcattgtggatagttcgggcagatggttcctctctcagaatcccccatcactctaa 577
           | |||||  |||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 582 cattgcagcgtgggtagttggggcagatggttcctctctcagagtcccccatcactctaa 641

                                                                       
Query: 578 ggttcactatgtgagttgaatatttgcaaccctcgtcatcacacatcancaaacctttat 637
           |||||||  |||| ||||| |||||||||||||| |||||||||||||  ||||||||||
Sbjct: 642 ggttcacactgtgcgttgagtatttgcaaccctcatcatcacacatcagtaaacctttat 701

                            
Query: 638 nataccgattgatgaaa 654
            |||  |||||||||||
Sbjct: 702 aatatagattgatgaaa 718

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>dbj|AB004461.1| Oryza sativa mRNA for DNA polymerase alpha catalytic subunit,
            complete cds
          Length = 4090

 Score =  355 bits (179), Expect = 1e-94
 Identities = 327/377 (86%)
 Strand = Plus / Minus

                                                                        
Query: 278  atcagattgacactgctagatctgtcaattgaacccatccaaaagcacatctgtcacgga 337
            |||||||||| | ||| |||||  |||| |||||||| ||||| ||||||||||| ||||
Sbjct: 3754 atcagattgatattgcaagatccttcaactgaacccagccaaatgcacatctgtctcgga 3695

                                                                        
Query: 338  ttttctgaatctccagaaatgccaagcttatggtttggtttaatactgcaaactctttct 397
            ||||||||| |||||  ||||||||| | || |||||| ||||| | ||||| |||||||
Sbjct: 3694 ttttctgaacctccattaatgccaagttaatagtttggcttaatgccgcaaattctttct 3635

                                                                        
Query: 398  caaagggaagccgaatcttctggtccaacttctcaagacagcgggctgcatcaagtacat 457
            |||| ||||||||   |||||||||||||||||||||||| || | |||||||| |||||
Sbjct: 3634 caaaaggaagccgcgccttctggtccaacttctcaagacatcgagttgcatcaactacat 3575

                                                                        
Query: 458  aacaaaagtaggacaattgcctgtatagatctgcctctgtgtactgtctgactagacggc 517
            | |||||||| |||||||||||||||||||||||||| || |||||||| |||||  |||
Sbjct: 3574 agcaaaagtatgacaattgcctgtatagatctgcctccgtatactgtctcactaggtggc 3515

                                                                        
Query: 518  cgttgcattgtggatagttcgggcagatggttcctctctcagaatcccccatcactctaa 577
            | |||||  |||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3514 cattgcagcgtgggtagttggggcagatggttcctctctcagagtcccccatcactctaa 3455

                                                                        
Query: 578  ggttcactatgtgagttgaatatttgcaaccctcgtcatcacacatcancaaacctttat 637
            |||||||  |||| ||||| |||||||||||||| |||||||||||||  ||||||||||
Sbjct: 3454 ggttcacactgtgcgttgagtatttgcaaccctcatcatcacacatcagtaaacctttat 3395

                             
Query: 638  nataccgattgatgaaa 654
             |||  |||||||||||
Sbjct: 3394 aatatagattgatgaaa 3378

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>ref|NM_190772.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4914

 Score =  353 bits (178), Expect = 5e-94
 Identities = 326/376 (86%)
 Strand = Plus / Minus

                                                                        
Query: 279  tcagattgacactgctagatctgtcaattgaacccatccaaaagcacatctgtcacggat 338
            ||||||||| | ||| |||||  |||| |||||||| ||||| ||||||||||| |||||
Sbjct: 4914 tcagattgatattgcaagatccttcaactgaacccagccaaatgcacatctgtctcggat 4855

                                                                        
Query: 339  tttctgaatctccagaaatgccaagcttatggtttggtttaatactgcaaactctttctc 398
            |||||||| |||||  ||||||||| | || |||||| ||||| | ||||| ||||||||
Sbjct: 4854 tttctgaacctccattaatgccaagttaatagtttggcttaatgccgcaaattctttctc 4795

                                                                        
Query: 399  aaagggaagccgaatcttctggtccaacttctcaagacagcgggctgcatcaagtacata 458
            ||| ||||||||   |||||||||||||||||||||||| || | |||||||| ||||||
Sbjct: 4794 aaaaggaagccgcgccttctggtccaacttctcaagacatcgagttgcatcaactacata 4735

                                                                        
Query: 459  acaaaagtaggacaattgcctgtatagatctgcctctgtgtactgtctgactagacggcc 518
             |||||||| |||||||||||||||||||||||||| || |||||||| |||||  ||||
Sbjct: 4734 gcaaaagtatgacaattgcctgtatagatctgcctccgtatactgtctcactaggtggcc 4675

                                                                        
Query: 519  gttgcattgtggatagttcgggcagatggttcctctctcagaatcccccatcactctaag 578
             |||||  |||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4674 attgcagcgtgggtagttggggcagatggttcctctctcagagtcccccatcactctaag 4615

                                                                        
Query: 579  gttcactatgtgagttgaatatttgcaaccctcgtcatcacacatcancaaacctttatn 638
            ||||||  |||| ||||| |||||||||||||| |||||||||||||  |||||||||| 
Sbjct: 4614 gttcacactgtgcgttgagtatttgcaaccctcatcatcacacatcagtaaacctttata 4555

                            
Query: 639  ataccgattgatgaaa 654
            |||  |||||||||||
Sbjct: 4554 atatagattgatgaaa 4539

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 1e-26
 Identities = 107/121 (88%)
 Strand = Plus / Plus

                                                                            
Query: 501      ctgtctgactagacggccgttgcattgtggatagttcgggcagatggttcctctctcaga 560
                |||||| |||||  |||| |||||  |||| ||||| |||||||||||||||||||||||
Sbjct: 37619800 ctgtctcactaggtggccattgcagcgtgggtagttggggcagatggttcctctctcaga 37619859

                                                                            
Query: 561      atcccccatcactctaaggttcactatgtgagttgaatatttgcaaccctcgtcatcaca 620
                 |||||||||||||||||||||||  |||| ||||| |||||||||||||| ||||||||
Sbjct: 37619860 gtcccccatcactctaaggttcacactgtgcgttgagtatttgcaaccctcatcatcaca 37619919

                 
Query: 621      c 621
                |
Sbjct: 37619920 c 37619920



 Score =  115 bits (58), Expect = 2e-22
 Identities = 127/150 (84%)
 Strand = Plus / Plus

                                                                            
Query: 278      atcagattgacactgctagatctgtcaattgaacccatccaaaagcacatctgtcacgga 337
                |||||||||| | ||| |||||  |||| |||||||| ||||| ||||||||||| ||||
Sbjct: 37619414 atcagattgatattgcaagatccttcaactgaacccagccaaatgcacatctgtctcgga 37619473

                                                                            
Query: 338      ttttctgaatctccagaaatgccaagcttatggtttggtttaatactgcaaactctttct 397
                ||||||||| |||||  ||||||||| | || |||||| ||||| | ||||| |||||||
Sbjct: 37619474 ttttctgaacctccattaatgccaagttaatagtttggcttaatgccgcaaattctttct 37619533

                                              
Query: 398      caaagggaagccgaatcttctggtccaact 427
                |||| ||||||||   ||||||||||||||
Sbjct: 37619534 caaaaggaagccgcgccttctggtccaact 37619563



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                            
Query: 426      cttctcaagacagcgggctgcatcaagtacataacaaaagtaggacaattgcctgtatag 485
                |||||||||||| || | |||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 37619649 cttctcaagacatcgagttgcatcaactacatagcaaaagtatgacaattgcctgtatag 37619708

                                   
Query: 486      atctgcctctgtgtactgt 504
                ||||||||| || ||||||
Sbjct: 37619709 atctgcctccgtatactgt 37619727

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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0677H08
          Length = 178830

 Score =  129 bits (65), Expect = 1e-26
 Identities = 107/121 (88%)
 Strand = Plus / Plus

                                                                         
Query: 501   ctgtctgactagacggccgttgcattgtggatagttcgggcagatggttcctctctcaga 560
             |||||| |||||  |||| |||||  |||| ||||| |||||||||||||||||||||||
Sbjct: 80274 ctgtctcactaggtggccattgcagcgtgggtagttggggcagatggttcctctctcaga 80333

                                                                         
Query: 561   atcccccatcactctaaggttcactatgtgagttgaatatttgcaaccctcgtcatcaca 620
              |||||||||||||||||||||||  |||| ||||| |||||||||||||| ||||||||
Sbjct: 80334 gtcccccatcactctaaggttcacactgtgcgttgagtatttgcaaccctcatcatcaca 80393

              
Query: 621   c 621
             |
Sbjct: 80394 c 80394



 Score =  115 bits (58), Expect = 2e-22
 Identities = 127/150 (84%)
 Strand = Plus / Plus

                                                                         
Query: 278   atcagattgacactgctagatctgtcaattgaacccatccaaaagcacatctgtcacgga 337
             |||||||||| | ||| |||||  |||| |||||||| ||||| ||||||||||| ||||
Sbjct: 79888 atcagattgatattgcaagatccttcaactgaacccagccaaatgcacatctgtctcgga 79947

                                                                         
Query: 338   ttttctgaatctccagaaatgccaagcttatggtttggtttaatactgcaaactctttct 397
             ||||||||| |||||  ||||||||| | || |||||| ||||| | ||||| |||||||
Sbjct: 79948 ttttctgaacctccattaatgccaagttaatagtttggcttaatgccgcaaattctttct 80007

                                           
Query: 398   caaagggaagccgaatcttctggtccaact 427
             |||| ||||||||   ||||||||||||||
Sbjct: 80008 caaaaggaagccgcgccttctggtccaact 80037



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                         
Query: 426   cttctcaagacagcgggctgcatcaagtacataacaaaagtaggacaattgcctgtatag 485
             |||||||||||| || | |||||||| |||||| |||||||| |||||||||||||||||
Sbjct: 80123 cttctcaagacatcgagttgcatcaactacatagcaaaagtatgacaattgcctgtatag 80182

                                
Query: 486   atctgcctctgtgtactgt 504
             ||||||||| || ||||||
Sbjct: 80183 atctgcctccgtatactgt 80201

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>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
             sequence
          Length = 164943

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 410   gaatcttctggtccaacttctcaaga 435
             |||||||||| |||||||||||||||
Sbjct: 61415 gaatcttctgctccaacttctcaaga 61390

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>gb|AC144861.3| Mus musculus BAC clone RP23-63D4 from chromosome 18, complete sequence
          Length = 176312

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 156    ttggcttccagttcctttcaccttc 180
              |||||||||||| ||||||||||||
Sbjct: 109029 ttggcttccagtgcctttcaccttc 109053

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>gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, complete sequence
          Length = 219227

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    ttatggatgctacatatttac 31
             |||||||||||||||||||||
Sbjct: 91953 ttatggatgctacatatttac 91933

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>gb|AC103644.15| Mus musculus chromosome 7, clone RP24-361F3, complete sequence
          Length = 171338

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 586    atgtgagttgaatatttgcaa 606
              |||||||||||||||||||||
Sbjct: 168179 atgtgagttgaatatttgcaa 168159

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>gb|AC122495.4| Mus musculus BAC clone RP24-397P10 from 9, complete sequence
          Length = 175838

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 303   caattgaacccatccaaaagcacat 327
             |||||||| ||||||||||||||||
Sbjct: 78258 caattgaaaccatccaaaagcacat 78282

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>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152358

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   attacagcaaacagtggctta 278
             |||||||||||||||||||||
Sbjct: 53218 attacagcaaacagtggctta 53198

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>dbj|AP002364.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-121L10, complete
             sequence
          Length = 165703

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 174   caccttcaacagcagatcaagtttcaaca 202
             |||||||||||| |||| |||||||||||
Sbjct: 62150 caccttcaacaggagattaagtttcaaca 62122

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>gb|AC126453.5| Mus musculus BAC clone RP23-244A6 from chromosome 6, complete sequence
          Length = 172616

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 145    aggtcaatcatttggcttccagtt 168
              ||||||||||||||||||| ||||
Sbjct: 123069 aggtcaatcatttggcttctagtt 123092

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>gb|AC137583.7| Mus musculus chromosome 13, clone RP23-140F24, complete sequence
          Length = 218518

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 586    atgtgagttgaatatttgca 605
              ||||||||||||||||||||
Sbjct: 144787 atgtgagttgaatatttgca 144768

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>gb|AC163353.3| Mus musculus BAC clone RP23-55G7 from chromosome 6, complete sequence
          Length = 264135

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 145   aggtcaatcatttggcttccagtt 168
             ||||||||||||||||||| ||||
Sbjct: 13469 aggtcaatcatttggcttctagtt 13492

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>gb|AC093476.6| Mus musculus chromosome 6, clone RP23-55C15, complete sequence
          Length = 259659

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 550   cctctctcagaatcccccatcact 573
             |||||||||| |||||||||||||
Sbjct: 91611 cctctctcagcatcccccatcact 91588

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>emb|BX927195.18| Zebrafish DNA sequence from clone CH211-124E6 in linkage group 19,
             complete sequence
          Length = 148711

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gtatttaaatgcaacatgat 129
             ||||||||||||||||||||
Sbjct: 47958 gtatttaaatgcaacatgat 47977

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>emb|CR848795.6| Zebrafish DNA sequence from clone DKEY-117A8 in linkage group 15,
             complete sequence
          Length = 56165

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    atttacaacagtagtacaatatac 49
             |||||||||||||||||| |||||
Sbjct: 24129 atttacaacagtagtacagtatac 24106

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>gb|AC131711.3| Mus musculus BAC clone RP23-192M18 from 6, complete sequence
          Length = 228400

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 550    cctctctcagaatcccccatcact 573
              |||||||||| |||||||||||||
Sbjct: 208272 cctctctcagcatcccccatcact 208249

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>gb|AC003985.2| Homo sapiens PAC clone RP5-978I12 from 7, complete sequence
          Length = 104492

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   ttttctgaatctccagaaat 357
             ||||||||||||||||||||
Sbjct: 50097 ttttctgaatctccagaaat 50116

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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     aacagcagatcaagtttcaa 200
               ||||||||||||||||||||
Sbjct: 2938001 aacagcagatcaagtttcaa 2937982

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>emb|AL357084.12| Human DNA sequence from clone RP11-471B18 on chromosome 6 Contains a
             ribosomal protein S18 (40S ribosomal protein S18)
             (RPS18)(KE3, HKE3, KE-3) pseudogene, complete sequence
          Length = 76042

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ttagaacatttgtatttaaa 118
             ||||||||||||||||||||
Sbjct: 25229 ttagaacatttgtatttaaa 25248

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>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part
             of a novel gene and a novel gene, complete sequence
          Length = 109088

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 573   tctaaggttcactatgtgag 592
             ||||||||||||||||||||
Sbjct: 47482 tctaaggttcactatgtgag 47501

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>emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 in linkage group 10,
             complete sequence
          Length = 150791

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    atttacaacagtagtacaatatac 49
             ||||||||||| ||||||||||||
Sbjct: 88797 atttacaacagcagtacaatatac 88820

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>emb|BX276114.6| Zebrafish DNA sequence from clone CH211-176L11 in linkage group 20
             Contains the kit gene for kit receptor, the 3' end of the
             pdgfra gene for platelet derived growth factor receptor
             alpha and a CpG island, complete sequence
          Length = 134212

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   agaacatttgtatttaaatg 120
             ||||||||||||||||||||
Sbjct: 82782 agaacatttgtatttaaatg 82763

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>ref|NM_204700.1| Gallus gallus cripto, FRL-1, cryptic family 1 (CFC1), mRNA
          Length = 1153

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 gcttgagattacagcaaaca 270
           ||||||||||||||||||||
Sbjct: 671 gcttgagattacagcaaaca 690

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>gb|AC010243.7| Homo sapiens chromosome 5 clone CTC-361G14, complete sequence
          Length = 178858

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    tctgaaacaactggttagaa 104
             ||||||||||||||||||||
Sbjct: 66656 tctgaaacaactggttagaa 66637

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>gb|AC067859.7| Homo sapiens chromosome 18, clone RP11-569D6, complete sequence
          Length = 195609

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    aatcatttggcttccagttc 169
              ||||||||||||||||||||
Sbjct: 145800 aatcatttggcttccagttc 145819

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>gb|AC010748.5| Homo sapiens BAC clone CTD-2532L16 from 16, complete sequence
          Length = 145459

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    tggcttccagttcctttcac 176
              ||||||||||||||||||||
Sbjct: 124454 tggcttccagttcctttcac 124435

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>ref|XM_679578.1| PREDICTED: Danio rerio similar to ATP-binding cassette, sub-family C,
            member 10 (LOC556709), mRNA
          Length = 5555

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  acatttgtatttaaatgcaa 123
            ||||||||||||||||||||
Sbjct: 5509 acatttgtatttaaatgcaa 5528

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>gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, complete sequence
          Length = 82078

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   aacatttgtatttaaatgcaacat 126
             |||||||| |||||||||||||||
Sbjct: 65824 aacatttgcatttaaatgcaacat 65847

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>emb|BX539338.4| Zebrafish DNA sequence from clone DKEY-240P9 in linkage group 2,
            complete sequence
          Length = 99688

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 104  acatttgtatttaaatgcaacatgatgt 131
            |||||||||| | |||||||||||||||
Sbjct: 4834 acatttgtatgttaatgcaacatgatgt 4807

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 367      atggtttggtttaatactgcaaac 390
                |||||||||||| |||||||||||
Sbjct: 17622136 atggtttggtttgatactgcaaac 17622159

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>gb|AF282984.1|AF282984 Gallus gallus CRYPTIC mRNA, complete cds
          Length = 984

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 gcttgagattacagcaaaca 270
           ||||||||||||||||||||
Sbjct: 632 gcttgagattacagcaaaca 651

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>gb|AC092289.3| Homo sapiens chromosome 16 clone CTD-2305H1, complete sequence
          Length = 129293

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tggcttccagttcctttcac 176
             ||||||||||||||||||||
Sbjct: 58059 tggcttccagttcctttcac 58040

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>gb|AC010888.12| Homo sapiens BAC clone RP11-418N16 from 2, complete sequence
          Length = 191863

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    tacatatttacaacagtagt 40
             ||||||||||||||||||||
Sbjct: 76926 tacatatttacaacagtagt 76945

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>gb|AC006466.3|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p11.2-p21, complete sequence
          Length = 156880

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  ttacagcaaacagtggctta 278
            ||||||||||||||||||||
Sbjct: 6088 ttacagcaaacagtggctta 6069

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>gb|AF228762.1|AF228761S2 Gallus gallus CRIPTO-related factor 1 gene, exon 6 and complete cds
          Length = 2021

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  gcttgagattacagcaaaca 270
            ||||||||||||||||||||
Sbjct: 1563 gcttgagattacagcaaaca 1582

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>gb|AF228760.1|AF228760 Gallus gallus CRIPTO-related factor 1 mRNA, complete cds
          Length = 1153

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 gcttgagattacagcaaaca 270
           ||||||||||||||||||||
Sbjct: 671 gcttgagattacagcaaaca 690

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>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
           BAC clone:OJ1288_C01
          Length = 111223

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 atggtttggtttaatactgcaaac 390
           |||||||||||| |||||||||||
Sbjct: 34  atggtttggtttgatactgcaaac 57

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>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   atggtttggtttaatactgcaaac 390
             |||||||||||| |||||||||||
Sbjct: 48484 atggtttggtttgatactgcaaac 48507

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>emb|BX004880.9| Zebrafish DNA sequence from clone CH211-69B7 in linkage group 11,
             complete sequence
          Length = 194839

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   acatttgtatttaaatgcaa 123
             ||||||||||||||||||||
Sbjct: 22074 acatttgtatttaaatgcaa 22055

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>emb|AL731782.15| Mouse DNA sequence from clone RP23-180G3 on chromosome X, complete
             sequence
          Length = 209800

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   aaactctttctcaaagggaa 406
             ||||||||||||||||||||
Sbjct: 80599 aaactctttctcaaagggaa 80618

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>emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 in linkage group 14,
              complete sequence
          Length = 153626

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 26     atttacaacagtagtacaatatac 49
              ||||||||||| ||||||||||||
Sbjct: 136588 atttacaacagcagtacaatatac 136565

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>gb|AC157605.1| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875A15,
            complete sequence
          Length = 40473

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  tccatggggagcttcttgct 238
            ||||||||||||||||||||
Sbjct: 9202 tccatggggagcttcttgct 9221

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>dbj|AK113127.1| Ciona intestinalis cDNA, clone:ciad008l11, full insert sequence
          Length = 2527

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  acagtggcttatcagattga 287
            ||||||||||||||||||||
Sbjct: 2381 acagtggcttatcagattga 2362

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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     aacagcagatcaagtttcaa 200
               ||||||||||||||||||||
Sbjct: 2933884 aacagcagatcaagtttcaa 2933865

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>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete
             sequence
          Length = 243969

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   tgcattgtggatagttcggg 540
             ||||||||||||||||||||
Sbjct: 33337 tgcattgtggatagttcggg 33356

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>gb|AC140356.3| Mus musculus BAC clone RP23-216B19 from 6, complete sequence
          Length = 211504

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 583    actatgtgagttgaatattt 602
              ||||||||||||||||||||
Sbjct: 125305 actatgtgagttgaatattt 125286

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>gb|L14433.1| Caenorhabditis elegans cosmid C50C3, complete sequence
          Length = 44733

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   tagaacatttgtatttaaat 119
             ||||||||||||||||||||
Sbjct: 24245 tagaacatttgtatttaaat 24226

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>emb|AL844551.3| Mouse DNA sequence from clone RP23-117M21 on chromosome 2, complete
              sequence
          Length = 172378

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     tggcacaaaggagggtctctgaaa 91
              ||||| ||||||||||||||||||
Sbjct: 124854 tggcagaaaggagggtctctgaaa 124831

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>emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chromosome 4, complete
              sequence
          Length = 223771

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     acaatatacactttgaaaat 60
              ||||||||||||||||||||
Sbjct: 141610 acaatatacactttgaaaat 141629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,070,094
Number of Sequences: 3902068
Number of extensions: 6070094
Number of successful extensions: 114249
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113997
Number of HSP's gapped (non-prelim): 251
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result