ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25b19 |
|---|---|
| Clone Library Name | barley_pub |
>DCAS_AGRSK (P60327) N-carbamoyl-D-amino acid hydrolase (EC 3.5.1.77)| (D-N-alpha-carbamilase) Length = 304 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = -2 Query: 410 GNSFIAGPTGEIVKLANDKDEEVLVAEFDLDEIKSTR-HGWGIFRDRRPDLYKVLLTL 240 G+S I PTGEIV L ++EV+ A DLD + R H + + R+P Y ++ L Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 304
>DCAS_AGRTU (Q44185) N-carbamoyl-D-amino acid hydrolase (EC 3.5.1.77)| (D-N-alpha-carbamilase) Length = 304 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 410 GNSFIAGPTGEIVKLANDKDEEVLVAEFDLDEIKSTR-HGWGIFRDRRPDLYKVL 249 G+S I PTGEIV L ++EV+ A DLD + R H + R+P Y ++ Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKAHRQPQHYGLI 301
>NIT1_MOUSE (Q8VDK1) Nitrilase homolog 1 (EC 3.5.-.-)| Length = 323 Score = 38.5 bits (88), Expect = 0.012 Identities = 23/91 (25%), Positives = 45/91 (49%) Frame = -2 Query: 530 HWKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKD 351 HW+ +++ A + ++A+ + G+ + T YG+S + P G +V ++ Sbjct: 233 HWEVLLRARAIESQCYVIAAAQCGRH-------HETRASYGHSMVVDPWGTVVARCSE-G 284 Query: 350 EEVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 258 + +A DL ++ R +F+ RRPDLY Sbjct: 285 PGLCLARIDLHFLQQMRQHLPVFQHRRPDLY 315
>NIT1_RAT (Q7TQ94) Nitrilase homolog 1 (EC 3.5.-.-)| Length = 292 Score = 38.5 bits (88), Expect = 0.012 Identities = 23/91 (25%), Positives = 45/91 (49%) Frame = -2 Query: 530 HWKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKD 351 HW+ +++ A + ++A+ + G+ + T YG+S + P G +V ++ Sbjct: 202 HWEVLLRARAIESQCYVIAAAQCGRH-------HETRASYGHSMVVDPWGTVVASCSE-G 253 Query: 350 EEVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 258 + +A DL ++ R +F+ RRPDLY Sbjct: 254 PGLCLARIDLHFLQQMRQHLPVFQHRRPDLY 284
>NIT3_YEAST (P49954) Probable hydrolase NIT3 (EC 3.5.-.-)| Length = 291 Score = 37.7 bits (86), Expect = 0.020 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = -2 Query: 428 STIKFYGNSFIAGPTGEIVKLANDKDEEVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 258 S+ YG+S + P G+IV A + EE++ AE D + I+S R + + RR D+Y Sbjct: 230 SSYHAYGHSIVVDPRGKIVAEAGE-GEEIIYAELDPEVIESFRQAVPLTKQRRFDVY 285
>NIT1_HUMAN (Q86X76) Nitrilase homolog 1 (EC 3.5.-.-)| Length = 327 Score = 37.7 bits (86), Expect = 0.020 Identities = 23/91 (25%), Positives = 44/91 (48%) Frame = -2 Query: 530 HWKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKD 351 HW+ +++ A +VA+ + G+ + YG+S + P G +V ++ Sbjct: 237 HWEVLLRARAIETQCYVVAAAQCGRHHEKRAS-------YGHSMVVDPWGTVVARCSE-G 288 Query: 350 EEVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 258 + +A DL+ ++ R +F+ RRPDLY Sbjct: 289 PGLCLARIDLNYLRQLRRHLPVFQHRRPDLY 319
>BUP1_PONPY (Q5RBM6) Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase)| (N-carbamoyl-beta-alanine amidohydrolase) Length = 384 Score = 36.2 bits (82), Expect = 0.059 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Frame = -2 Query: 527 WKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIK--------FYGNSFIAGPTGEIV 372 W + A AN A NR+G E E + K FYG+S++A P G Sbjct: 268 WSIEARNAAIANHCFTCAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRT 327 Query: 371 KLANDKDEEVLVAEFDLDEIKSTRHGWGIFRDRRPDLYKVLLTLDGKTSSSS*VPLFMKE 192 + + +LVA+ DL+ + W R ++Y L K++ S P +KE Sbjct: 328 PGLSRSQDGLLVAKLDLNLCQQVNDVWNFKMTGRYEMYARELAEAVKSNYS---PTIVKE 384
>YAG5_STALU (P55178) Hypothetical UPF0012 protein in agr operon (ORF 5)| (Fragment) Length = 234 Score = 35.8 bits (81), Expect = 0.076 Identities = 22/92 (23%), Positives = 43/92 (46%) Frame = -2 Query: 530 HWKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKD 351 HW+ +++ A N + ++ N G + ++ G+S P GEI++ + + Sbjct: 152 HWQVLLKARAIENNMYVIGCNGCGYD--------GKTQYAGHSVAINPNGEIIQELSTTE 203 Query: 350 EEVLVAEFDLDEIKSTRHGWGIFRDRRPDLYK 255 +E+ V D+D ++ R +F P LYK Sbjct: 204 KELTV-TIDIDAVEQQRKAIPVFDSLVPHLYK 234
>BUP1_RAT (Q03248) Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase)| (N-carbamoyl-beta-alanine amidohydrolase) Length = 393 Score = 33.5 bits (75), Expect = 0.38 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Frame = -2 Query: 527 WKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIK--------FYGNSFIAGPTGEIV 372 W + A AN A NR+G+E E + K FYG+S++A P G Sbjct: 268 WPIEARNAAIANHCFTCALNRVGQEHYPNEFTSGDGKKAHHDLGYFYGSSYVAAPDGSRT 327 Query: 371 KLANDKDEEVLVAEFDLDEIKSTRHGWGIFRDRRPDLYKVLLTLDGKTSSSS*VPLFMKE 192 + + +LV E +L+ + W R ++Y L K + S P +KE Sbjct: 328 PGLSRNQDGLLVTELNLNLCQQINDFWTFKMTGRLEMYARELAEAVKPNYS---PNIVKE 384 Query: 191 EM 186 ++ Sbjct: 385 DL 386
>BUP1_MOUSE (Q8VC97) Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase)| (N-carbamoyl-beta-alanine amidohydrolase) Length = 393 Score = 33.5 bits (75), Expect = 0.38 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Frame = -2 Query: 527 WKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIK--------FYGNSFIAGPTGEIV 372 W + A AN A NR+G+E E + K FYG+S++A P G Sbjct: 268 WPIEARNAAIANHCFTCALNRVGQEHFPNEFTSGDGKKAHHDLGYFYGSSYVAAPDGSRT 327 Query: 371 KLANDKDEEVLVAEFDLDEIKSTRHGWGIFRDRRPDLYKVLLTLDGKTSSSS*VPLFMKE 192 + + +LV E +L+ + W R ++Y L K + S P +KE Sbjct: 328 PGLSRNQDGLLVTELNLNLCQQINDFWTFKMTGRLEMYARELAEAVKPNYS---PNIVKE 384 Query: 191 EM 186 ++ Sbjct: 385 DL 386
>BUP1_HUMAN (Q9UBR1) Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase)| (N-carbamoyl-beta-alanine amidohydrolase) (BUP-1) Length = 384 Score = 32.7 bits (73), Expect = 0.65 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Frame = -2 Query: 527 WKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIK--------FYGNSFIAGPTGEIV 372 W + A AN A NR+G E E + K FYG+S++A P Sbjct: 268 WPIEARNAAIANHCFTCAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDSSRT 327 Query: 371 KLANDKDEEVLVAEFDLDEIKSTRHGWGIFRDRRPDLYKVLLTLDGKTSSSS*VPLFMKE 192 + + +LVA+ DL+ + W R ++Y L K++ S P +KE Sbjct: 328 PGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTGRYEMYARELAEAVKSNYS---PTIVKE 384
>YAFV_ECOLI (Q47679) Hypothetical UPF0012 protein yafV (EC 3.5.-.-)| Length = 256 Score = 32.3 bits (72), Expect = 0.85 Identities = 20/85 (23%), Positives = 38/85 (44%) Frame = -2 Query: 530 HWKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKD 351 HW+ ++ A N + NR+G + GN + G+S + P GEI+ A+ Sbjct: 172 HWQALLTARAIENQAYVAGCNRVGSD------GNGC-HYRGDSRVINPQGEIIATADAHQ 224 Query: 350 EEVLVAEFDLDEIKSTRHGWGIFRD 276 + AE + ++ R + ++D Sbjct: 225 ATRIDAELSMAALREYREKFPAWQD 249
>YPQQ_PSEFL (P55176) Hypothetical UPF0012 protein in pqqF 5'region (EC 3.5.-.-)| (ORF2) Length = 285 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = -2 Query: 422 IKFYGNSFIAGPTGEIVKLANDKDEEVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 258 I++ G S IA P G + LA DE +++ D + +R DRRP+LY Sbjct: 226 IRYCGQSSIAAPDGSRIALAG-LDEALIIGTLDRQLMGESRALNRYLSDRRPELY 279
>Y480_MYCTU (Q11146) Hypothetical UPF0012 protein Rv0480c/MT0498 (EC 3.5.-.-)| Length = 340 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = -2 Query: 533 EHWKRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIK--FYGNSFIAGPTGEIVKLAN 360 E W + + A ++ + A+ + T G S+ G S +A P GE+V A Sbjct: 240 EQWTLLARARALDSMSYVAAAGQADPGDARTGVGASSAAPTGVGGSLVASPLGEVVVSAG 299 Query: 359 DKDEEVLVAEFDLDEIKSTRHGWGIFRDR 273 + + +LVA+ D+D + + R + R++ Sbjct: 300 TQPQ-LLVADIDVDNVAAARDRIAVLRNQ 327
>NADE2_THEMA (Q9X0Y0) Probable glutamine-dependent NAD(+) synthetase (EC| 6.3.5.1) (NAD(+) synthase [glutamine-hydrolyzing]) Length = 576 Score = 31.2 bits (69), Expect = 1.9 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -2 Query: 434 GNSTIKFYGNSFIAGPTGEIVKLANDKDEEVLVAEFDLDE 315 G + F G S + +GE++ +EE++ + DLDE Sbjct: 209 GQDELVFDGGSMVVDASGEVINYGKLFEEEIITVDLDLDE 248
>RPOB_NEIG1 (Q5F5R5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 30.4 bits (67), Expect = 3.2 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -2 Query: 461 GKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKDEEVLVAEFDLDEIK 309 G ++ E + K I TGE++ AND+ E L+A+FD++ +K Sbjct: 286 GLTRLDVEQESLLGKALAADLIDSETGEVLASANDEITEELLAKFDINGVK 336
>YCZ2_SCHPO (O74556) Putative mannan endo-1,6-alpha-mannosidase C970.02| precursor (EC 3.2.1.101) (Endo-alpha-1->6-D-mannanase C970.02) Length = 442 Score = 30.4 bits (67), Expect = 3.2 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +1 Query: 46 GIFIDVIYWWEITNQVGNVLADRYLCRGKDMKIYRLSVWCSPSIVELISSFIKSGT*DDD 225 G+F+ YWWE N L +RY+ G + + EL+ + + + +D Sbjct: 55 GMFLPPAYWWE-AGAAWNGLLNRYIATG------------NSTYNELVKTSMLYQSGEDS 101 Query: 226 DVLPSNVSST 255 D +PSN +++ Sbjct: 102 DYMPSNYTTS 111
>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2191 Score = 30.0 bits (66), Expect = 4.2 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 524 KRVMQGHAGANLVPLVASNRIGKETVETEHGNSTIKFYGNSFIAGPTGEIVKLANDKDEE 345 K + QG+ + L V N G +T+ HG ++K G+ F A + + + Sbjct: 1935 KTMTQGNGKSVLPSSVCRN--GTDTIYNYHGIVSLKLEGDRFSAHKRKAKISIVSQPQRT 1992 Query: 344 VLVAEFDL-DEIKST 303 + VAE L D+++ST Sbjct: 1993 IKVAELPLADKVEST 2007
>YB54_METTM (Q50777) Hypothetical 16.1 kDa protein in MTR region (ORF143)| Length = 143 Score = 30.0 bits (66), Expect = 4.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 431 NSTIKFYGNSFIAGPTGEIVKLANDKDEEVLV 336 N +KF G P EIVKLA ++D +V++ Sbjct: 78 NPNVKFRGVMLEGNPADEIVKLAEEEDVDVII 109
>RPOB_NEIMB (Q59622) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 29.6 bits (65), Expect = 5.5 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -2 Query: 398 IAGPTGEIVKLANDKDEEVLVAEFDLDEIK 309 I TGE++ AND+ E L+A+FD++ +K Sbjct: 307 IDSETGEVLASANDEITEELLAKFDINGVK 336
>RPOB_NEIMA (P57009) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1392 Score = 29.6 bits (65), Expect = 5.5 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -2 Query: 398 IAGPTGEIVKLANDKDEEVLVAEFDLDEIK 309 I TGE++ AND+ E L+A+FD++ +K Sbjct: 307 IDSETGEVLASANDEITEELLAKFDINGVK 336
>LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell lineage protein 3)| (Lethal protein 94) Length = 438 Score = 29.3 bits (64), Expect = 7.2 Identities = 19/58 (32%), Positives = 25/58 (43%) Frame = -1 Query: 186 ELHNAGRTPNGQTVDLHVFPPA*IAICQYVSNLVGDFPPIYNINKNTVMYVMDRQQHI 13 E N +TPNG+ + +H P C Y G PP NI+ + RQQ I Sbjct: 274 EAFNVLKTPNGRHIPVHQIPS-----CSYTIPTPGTVPP--NISSTPGSRIPTRQQAI 324
>SUOX_DROME (Q9VWP4) Probable sulfite oxidase, mitochondrial precursor (EC| 1.8.3.1) Length = 573 Score = 29.3 bits (64), Expect = 7.2 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = -2 Query: 449 VETEHGNSTIKFYGNSFIAGPTGEIVK--LANDKDEEVLVAEFDLDEIKSTRH-GWGIFR 279 V+ + G+ T++ Y S G +IV+ L ND+ VAE + +E+ RH GW ++ Sbjct: 462 VDDDEGHITVRGYAWS---GGGRKIVRVDLTNDEGVSWHVAELEQEEMPDGRHYGWSLWT 518 Query: 278 DRRP 267 R P Sbjct: 519 ARLP 522
>GNA1_CAEEL (Q17427) Glucosamine 6-phosphate N-acetyltransferase (EC 2.3.1.4)| (Phosphoglucosamine transacetylase) (Phosphoglucosamine acetylase) Length = 165 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +1 Query: 58 DVIYWWEITNQ-VGNVLADRYLCRGKDMKIYRLSVWCSPSIVELISSF 198 DV+ E+ Q +G VL + GK + +Y++S+ C P ++ S F Sbjct: 105 DVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQF 152
>TORY_HAEIN (P44799) Cytochrome c-type protein torY| Length = 368 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 8/38 (21%) Frame = -2 Query: 380 EIVKLANDKDEEVLVAEF--------DLDEIKSTRHGW 291 E+VK NDK EV + + D D+I+ T HGW Sbjct: 201 EMVKATNDKGNEVRLMPYAELMQWKVDGDQIQGTLHGW 238
>EST2_HUMAN (O00748) Carboxylesterase 2 precursor (EC 3.1.1.1) (CE-2) (hCE-2)| Length = 559 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 63 YILVGNHQPSWKRTGRSLFMQGERHEDLPFV 155 Y HQPSW + R M+ + ++LPFV Sbjct: 434 YFYEFQHQPSWLKNIRPPHMKADHGDELPFV 464 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,206,819 Number of Sequences: 219361 Number of extensions: 1498268 Number of successful extensions: 4238 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4234 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
