>ref|XM_472837.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2073

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 145/179 (81%)
 Strand = Plus / Minus

                                                                        
Query: 426  cgcttccattgaaaactccgagcattgcctctgattgctaaacgcccacgcatagcccca 485
            ||||||||||| || |||||||||   ||||||| || || ||||||||||||||| |||
Sbjct: 1931 cgcttccattgtaagctccgagcaccacctctgagtggtagacgcccacgcatagcacca 1872

                                                                        
Query: 486  gggaatgtgggccttgggtatgcggttctgatgagcctggaagcaaatggtgatgcacga 545
            || ||||  |||||||||||||| |||||  |||| || ||||  |||| |||| | |||
Sbjct: 1871 ggaaatgctggccttgggtatgcagttctagtgagtcttgaagggaatgttgatccccga 1812

                                                                       
Query: 546  acaccacgggaccaggcaggctgctgaggcacttcaacagagctttttcgaacaacctt 604
              |||||||| |||| ||| ||| |||| |||||| | |||| | |||| |||||||||
Sbjct: 1811 gaaccacggggccagccagactgttgagacacttcgagagagttctttctaacaacctt 1753



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 291  gtcgcaccaacatcctgttttggctcggtgcgtgtgtaggtgaagct 337
            ||||||||||| ||||||||| |||| |  |||||||||||||||||
Sbjct: 2066 gtcgcaccaacgtcctgtttttgctcagcacgtgtgtaggtgaagct 2020

>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 144/178 (80%)
 Strand = Plus / Minus

                                                                         
Query: 426   cgcttccattgaaaactccgagcattgcctctgattgctaaacgcccacgcatagcccca 485
             ||||||||||| || |||||||||   ||||||| || || ||||||||||||||| |||
Sbjct: 41261 cgcttccattgtaagctccgagcaccacctctgagtggtagacgcccacgcatagcacca 41202

                                                                         
Query: 486   gggaatgtgggccttgggtatgcggttctgatgagcctggaagcaaatggtgatgcacga 545
             || ||||  |||||||||||||| |||||  |||| || ||||  |||| |||| | |||
Sbjct: 41201 ggaaatgctggccttgggtatgcagttctagtgagtcttgaagggaatgttgatccccga 41142

                                                                       
Query: 546   acaccacgggaccaggcaggctgctgaggcacttcaacagagctttttcgaacaacct 603
               |||||||| |||| ||| ||| |||| |||||| | |||| | |||| ||||||||
Sbjct: 41141 gaaccacggggccagccagactgttgagacacttcgagagagttctttctaacaacct 41084



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 291   gtcgcaccaacatcctgttttggctcggtgcgtgtgtaggtgaagct 337
             ||||||||||| ||||||||| |||| |  |||||||||||||||||
Sbjct: 41396 gtcgcaccaacgtcctgtttttgctcagcacgtgtgtaggtgaagct 41350



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                            
Query: 137   attcagttccataaaacaagccactcactaagctctgcaactaaata 183
             ||||||||||| ||||| ||||  | |||||||||||||||||||||
Sbjct: 41527 attcagttcca-aaaaccagcctgttactaagctctgcaactaaata 41482

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 144/178 (80%)
 Strand = Plus / Minus

                                                                            
Query: 426      cgcttccattgaaaactccgagcattgcctctgattgctaaacgcccacgcatagcccca 485
                ||||||||||| || |||||||||   ||||||| || || ||||||||||||||| |||
Sbjct: 23598580 cgcttccattgtaagctccgagcaccacctctgagtggtagacgcccacgcatagcacca 23598521

                                                                            
Query: 486      gggaatgtgggccttgggtatgcggttctgatgagcctggaagcaaatggtgatgcacga 545
                || ||||  |||||||||||||| |||||  |||| || ||||  |||| |||| | |||
Sbjct: 23598520 ggaaatgctggccttgggtatgcagttctagtgagtcttgaagggaatgttgatccccga 23598461

                                                                          
Query: 546      acaccacgggaccaggcaggctgctgaggcacttcaacagagctttttcgaacaacct 603
                  |||||||| |||| ||| ||| |||| |||||| | |||| | |||| ||||||||
Sbjct: 23598460 gaaccacggggccagccagactgttgagacacttcgagagagttctttctaacaacct 23598403



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 291      gtcgcaccaacatcctgttttggctcggtgcgtgtgtaggtgaagct 337
                ||||||||||| ||||||||| |||| |  |||||||||||||||||
Sbjct: 23598715 gtcgcaccaacgtcctgtttttgctcagcacgtgtgtaggtgaagct 23598669



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                               
Query: 137      attcagttccataaaacaagccactcactaagctctgcaactaaata 183
                ||||||||||| ||||| ||||  | |||||||||||||||||||||
Sbjct: 23598846 attcagttcca-aaaaccagcctgttactaagctctgcaactaaata 23598801

>gb|AY106277.1| Zea mays PCO097025 mRNA sequence
          Length = 884

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 104/125 (83%)
 Strand = Plus / Minus

                                                                       
Query: 495 ggccttgggtatgcggttctgatgagcctggaagcaaatggtgatgcacgaacaccacgg 554
           |||||||||||||| ||||| |||||||| ||||||||||||||| | | |  | |||||
Sbjct: 399 ggccttgggtatgcagttctaatgagccttgaagcaaatggtgatccccaagaagcacgg 340

                                                                       
Query: 555 gaccaggcaggctgctgaggcacttcaacagagctttttcgaacaaccttcaaaatgcgt 614
           | | || ||||| |||| |  ||||||   |||||||| ||||| |||||||||||||||
Sbjct: 339 ggcaagacaggcagctgggttacttcagtggagcttttccgaacgaccttcaaaatgcgt 280

                
Query: 615 gacat 619
           |||||
Sbjct: 279 gacat 275



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 308 ttttggctcggtgcgtgtgtaggtgaagcttcg 340
           ||||||||| |||||||||||||||||| ||||
Sbjct: 577 ttttggctccgtgcgtgtgtaggtgaagtttcg 545

>dbj|AK109738.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C12, full
           insert sequence
          Length = 1663

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 122/151 (80%)
 Strand = Plus / Minus

                                                                       
Query: 430 tccattgaaaactccgagcattgcctctgattgctaaacgcccacgcatagccccaggga 489
           ||||||| || |||||||||   ||||||| || || ||||||||||||||| ||||| |
Sbjct: 165 tccattgtaagctccgagcaccacctctgagtggtagacgcccacgcatagcaccaggaa 106

                                                                       
Query: 490 atgtgggccttgggtatgcggttctgatgagcctggaagcaaatggtgatgcacgaacac 549
           |||  |||||||||||||| |||||  |||| || ||||  |||| |||| | |||  ||
Sbjct: 105 atgctggccttgggtatgcagttctagtgagtcttgaagggaatgttgatccccgagaac 46

                                          
Query: 550 cacgggaccaggcaggctgctgaggcacttc 580
           |||||| |||| ||| ||| |||| ||||||
Sbjct: 45  cacggggccagccagactgttgagacacttc 15

>gb|BT018955.1| Zea mays clone Contig157.F mRNA sequence
          Length = 803

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                       
Query: 495 ggccttgggtatgcggttctgatgagcctggaagcaaatggtgatgcacgaacaccacgg 554
           |||||||||||||| ||||| |||||||| |||||||||||  || | | |  | |||||
Sbjct: 323 ggccttgggtatgcagttctaatgagccttgaagcaaatggaaatccccaagaagcacgg 264

                                                                       
Query: 555 gaccaggcaggctgctgaggcacttcaacagagctttttcgaacaaccttcaaaatgcgt 614
           | | || ||||| |||| |  ||||||   |||||||| ||||| |||||||||||||||
Sbjct: 263 ggcaagacaggcagctgggttacttcagtggagcttttccgaacgaccttcaaaatgcgt 204

                
Query: 615 gacat 619
           |||||
Sbjct: 203 gacat 199



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 308 ttttggctcggtgcgtgtgtaggtgaagcttcg 340
           ||||||||| |||||||||||||||||| ||||
Sbjct: 501 ttttggctccgtgcgtgtgtaggtgaagtttcg 469

>gb|BT017663.1| Zea mays clone EL01N0440H02.c mRNA sequence
          Length = 679

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                        
Query: 495 ggccttgggtatgcggttctgatgagcctggaagcaaatggtgat 539
           |||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 165 ggccttgggtatgcagttctaatgagccttgaagcaaatggtgat 121



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                       
Query: 307 gttttggctcggtgcgtgtgtaggtgaagcttcgcgttatcggagttaccatctgattcc 366
           |||||||||| ||||||||||||||||||||||| |   |||| || |||| ||||||||
Sbjct: 353 gttttggctccgtgcgtgtgtaggtgaagcttcgtggggtcggggtgaccaactgattcc 294

                                           
Query: 367 cgggtgttacaggtgtagcttgacttggtttt 398
           | || | |  ||||| ||| ||||||||||||
Sbjct: 293 caggagctgaaggtgcagcctgacttggtttt 262

>gb|DQ163564.1| Candidatus Hamiltonella defensa clone P120037 genomic sequence
          Length = 1187

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 133 aaatattcagttccataaaaca 154
           ||||||||||||||||||||||
Sbjct: 692 aaatattcagttccataaaaca 713

>gb|DQ163485.1| Candidatus Hamiltonella defensa clone P100050 genomic sequence
          Length = 1519

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 133 aaatattcagttccataaaaca 154
           ||||||||||||||||||||||
Sbjct: 990 aaatattcagttccataaaaca 969

>gb|DQ163468.1| Candidatus Hamiltonella defensa clone P100022 genomic sequence
          Length = 1508

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 133 aaatattcagttccataaaaca 154
           ||||||||||||||||||||||
Sbjct: 979 aaatattcagttccataaaaca 958

>gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237425

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    agcaggctggggatgagcta 276
              ||||||||||||||||||||
Sbjct: 142345 agcaggctggggatgagcta 142364

>gb|AC134472.4| Mus musculus BAC clone RP23-123E16 from chromosome 18, complete
             sequence
          Length = 185134

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   ggtgttacaggtgtagcttg 388
             ||||||||||||||||||||
Sbjct: 83433 ggtgttacaggtgtagcttg 83452

>gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosome 9, complete sequence
          Length = 206805

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    tatttaccaaaagaggctaa 204
              ||||||||||||||||||||
Sbjct: 188077 tatttaccaaaagaggctaa 188096

>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    ttcaacagagctttttcgaa 597
              ||||||||||||||||||||
Sbjct: 683369 ttcaacagagctttttcgaa 683350

>gb|AC164123.4| Mus musculus BAC clone RP24-390M17 from chromosome 9, complete sequence
          Length = 130985

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    tatttaccaaaagaggctaa 204
              ||||||||||||||||||||
Sbjct: 128824 tatttaccaaaagaggctaa 128805

>gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181835

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 128   aactcaaatattcagttccataaa 151
             ||||||||||||| ||||||||||
Sbjct: 69966 aactcaaatattctgttccataaa 69943

>gb|AC011239.5| Homo sapiens BAC clone RP11-414D15 from 2, complete sequence
          Length = 189875

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   agccactcactaagctctgc 174
             ||||||||||||||||||||
Sbjct: 53133 agccactcactaagctctgc 53114

>gb|AC005242.1|AC005242 Homo sapiens chromosome 17, clone hRPK.118_F_13, complete sequence
          Length = 160262

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    actaaatagtatttaccaaa 195
              ||||||||||||||||||||
Sbjct: 137068 actaaatagtatttaccaaa 137087

>emb|AL844893.9| Mouse DNA sequence from clone RP23-355H24 on chromosome 2, complete
              sequence
          Length = 175570

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    ttacaggtgtagcttgactt 392
              ||||||||||||||||||||
Sbjct: 145422 ttacaggtgtagcttgactt 145441

>emb|AL772371.3| Mouse DNA sequence from clone RP23-234N12 on chromosome 4, complete
              sequence
          Length = 237282

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    agctatctctgtgagttcca 248
              ||||||||||||||||||||
Sbjct: 204263 agctatctctgtgagttcca 204282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,795,491
Number of Sequences: 3902068
Number of extensions: 4795491
Number of successful extensions: 105116
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105013
Number of HSP's gapped (non-prelim): 102
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)