| Clone Name | rbags25b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596574.1| Saccharum officinarum clone SCCCLR1072A04, complete sequence Length = 2198 Score = 170 bits (86), Expect = 3e-39 Identities = 247/300 (82%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 309 tcagcgccgtacacaaactgcctttcgtaagg---gtatgggtgcctctctggtgttgcc 365 ||||| || |||||||||||||| |||||||| | | || ||||||||||| || | Sbjct: 344 tcagcaccatacacaaactgcctctcgtaaggattggagggatgcctctctgggtttact 403 Query: 366 tggtagaagctcttctcggggaagctggtgacacggggtgcatagagcgacccgttggca 425 ||||||||||||| || | |||| || ||||| ||||| || ||| || |||||| Sbjct: 404 gggtagaagctcttgtcagcaaagcctgtagcacggtgtgcaaaggccgatccattggca 463 Query: 426 cgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgccttagcc 485 || |||| ||||||||||||||| || ||||||||||||||||||||||| ||||| || Sbjct: 464 cgaggccgcttggactgtggctttgctgcttcaacagccctcctcttgtctgcctttgct 523 Query: 486 ttctccaactgaatcacccttttctggagtggatccacgggatattgctcctccagtttg 545 ||||| | ||| | ||||||||||| ||||||||||| || || |||||||| |||||| Sbjct: 524 ttctctagctgcaaaacccttttctgtagtggatccacagggtactgctcctcaagtttg 583 Query: 546 tgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattcatctca 605 ||||| || ||||| || ||||||| ||||||||||| || |||||| |||||||||||| Sbjct: 584 tgctcttcaatgcatttaatgacagatttcagtgcagccaactcacgttcattcatctca 643 Score = 77.8 bits (39), Expect = 4e-11 Identities = 141/167 (84%), Gaps = 11/167 (6%) Strand = Plus / Plus Query: 77 ccaactattttcagctaggcaaactagctaga-tgactgatacaactacaacaacag-ca 134 |||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| | || Sbjct: 122 ccaactatttccagctaggcaaactagc-agagtaactgatacgactacaacaacgggca 180 Query: 135 gaaggttaaaagctagggatagttaggaaagagcccatgcactttgtagctctcccccat 194 | ||||||| ||||| |||||||||||||||| | ||||| | | | ||||| || Sbjct: 181 gcaggttaa--gctag--atagttaggaaagagcacctgcacctggctg-tctcc---at 232 Query: 195 tagtggatataaggcacctggtactgcaccgggtagccattaccgta 241 ||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 233 tagtggatatacgggacctggtactgaactgggtagccattaccgta 279
>gb|AY109393.1| Zea mays CL6746_2 mRNA sequence Length = 2069 Score = 163 bits (82), Expect = 8e-37 Identities = 246/300 (82%), Gaps = 3/300 (1%) Strand = Plus / Minus Query: 309 tcagcgccgtacacaaactgcctttcgtaagggt---atgggtgcctctctggtgttgcc 365 |||||||| |||||||||||||| ||| |||| | |||| ||||||||||| ||||| Sbjct: 1683 tcagcgccatacacaaactgcctctcgcaaggattgaatggatgcctctctggggttgct 1624 Query: 366 tggtagaagctcttctcggggaagctggtgacacggggtgcatagagcgacccgttggca 425 |||||||||||| || | |||| || |||||| |||| || ||| || |||||| Sbjct: 1623 gagtagaagctcttgtcagcaaagcctgtagcacgggttgcaaaggccgatccattggca 1564 Query: 426 cgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgccttagcc 485 || |||||||||||||| ||||| || |||||||||||| |||||||| | ||||| || Sbjct: 1563 cgaggcctcttggactgcggctttgctgcttcaacagccatcctcttggctgcctttgct 1504 Query: 486 ttctccaactgaatcacccttttctggagtggatccacgggatattgctcctccagtttg 545 ||||| | ||| | ||||||||||| ||||||||||| || || |||| ||| |||||| Sbjct: 1503 ttctctagctgcaaaacccttttctgaagtggatccacagggtactgctgctcaagtttg 1444 Query: 546 tgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattcatctca 605 ||||| || |||||||| ||||||| |||||| ||||| | |||||| |||||||||||| Sbjct: 1443 tgctcttcaatgcacttaatgacagatttcagcgcagataactcacgttcattcatctca 1384 Score = 69.9 bits (35), Expect = 9e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgta 241 ||||||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 1798 ccattagtggatatacgggacctggtactgaactgggtagccattaccgta 1748 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 ccaactattttcagctaggcaaactagc 104 |||||||||| || |||||||||||||| Sbjct: 1905 ccaactatttccatctaggcaaactagc 1878
>ref|XM_450263.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2132 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Minus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 1601 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 1542 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 1541 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 1482 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 1481 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 1422 Query: 600 at 601 || Sbjct: 1421 at 1420 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 283 ttatcatcgtagggtggtggtgggcttcagcgccgtacacaaactgcctttcgtaagggt 342 ||||||| || || ||||| ||||| ||||| || |||||| ||||||| |||||||||| Sbjct: 1738 ttatcattgtgggatggtgatgggcctcagcaccatacacatactgcctctcgtaagggt 1679 Query: 343 a 343 | Sbjct: 1678 a 1678
>ref|XM_450264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2179 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Minus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 1625 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 1566 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 1565 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 1506 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 1505 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 1446 Query: 600 at 601 || Sbjct: 1445 at 1444 Score = 73.8 bits (37), Expect = 6e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 1854 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 1795 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 1794 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 1735 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || |||||| ||||||| ||||||||||| Sbjct: 1734 agcaccatacacatactgcctctcgtaagggta 1702
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Plus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 3606770 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 3606829 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 3606830 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 3606889 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 3606890 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 3606949 Query: 600 at 601 || Sbjct: 3606950 at 3606951 Score = 115 bits (58), Expect = 2e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 417 ccgttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtcc 476 ||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct: 3616324 ccgttggcacgaggcctcttagactgtggctttccagcttcaacagccctcctcttgtct 3616383 Query: 477 gccttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcc 536 ||||| || ||||| | ||| || || ||| |||| ||||| || | ||||||| ||| Sbjct: 3616384 gccttggctttctctagctggatgactcttctctgaagtgggtcgataggatatttctca 3616443 Query: 537 tccagtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctca 596 || |||||||||||||| || || ||||| |||||||||| ||||||| ||| || ||| Sbjct: 3616444 tcaagtttgtgctcctcaatacatttgataacagctttcaaggcagacaactcgcgttca 3616503 Query: 597 tt 598 || Sbjct: 3616504 tt 3616505 Score = 73.8 bits (37), Expect = 6e-10 Identities = 124/153 (81%) Strand = Plus / Plus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 3606541 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 3606600 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 3606601 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 3606660 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || |||||| ||||||| ||||||||||| Sbjct: 3606661 agcaccatacacatactgcctctcgtaagggta 3606693 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 3616095 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 3616154 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 3616155 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 3616214 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || || ||| ||||||| ||||||||||| Sbjct: 3616215 agcaccatatacatactgcctctcgtaagggta 3616247 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 79 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 137 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 3615992 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 3616051 Query: 138 ggttaaaagcta 149 |||||||||||| Sbjct: 3616052 ggttaaaagcta 3616063 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 tgatacaactacaacaacagcagaa 137 |||||||| |||||||||||||||| Sbjct: 14480626 tgatacaagtacaacaacagcagaa 14480602
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Plus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 92545 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 92604 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 92605 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 92664 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 92665 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 92724 Query: 600 at 601 || Sbjct: 92725 at 92726 Score = 115 bits (58), Expect = 2e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 417 ccgttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtcc 476 ||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct: 102099 ccgttggcacgaggcctcttagactgtggctttccagcttcaacagccctcctcttgtct 102158 Query: 477 gccttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcc 536 ||||| || ||||| | ||| || || ||| |||| ||||| || | ||||||| ||| Sbjct: 102159 gccttggctttctctagctggatgactcttctctgaagtgggtcgataggatatttctca 102218 Query: 537 tccagtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctca 596 || |||||||||||||| || || ||||| |||||||||| ||||||| ||| || ||| Sbjct: 102219 tcaagtttgtgctcctcaatacatttgataacagctttcaaggcagacaactcgcgttca 102278 Query: 597 tt 598 || Sbjct: 102279 tt 102280 Score = 73.8 bits (37), Expect = 6e-10 Identities = 124/153 (81%) Strand = Plus / Plus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 92316 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 92375 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 92376 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 92435 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || |||||| ||||||| ||||||||||| Sbjct: 92436 agcaccatacacatactgcctctcgtaagggta 92468 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 101870 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 101929 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 101930 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 101989 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || || ||| ||||||| ||||||||||| Sbjct: 101990 agcaccatatacatactgcctctcgtaagggta 102022 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 79 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 137 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 101767 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 101826 Query: 138 ggttaaaagcta 149 |||||||||||| Sbjct: 101827 ggttaaaagcta 101838
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Plus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 15031 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 15090 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 15091 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 15150 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 15151 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 15210 Query: 600 at 601 || Sbjct: 15211 at 15212 Score = 115 bits (58), Expect = 2e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 417 ccgttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtcc 476 ||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct: 24585 ccgttggcacgaggcctcttagactgtggctttccagcttcaacagccctcctcttgtct 24644 Query: 477 gccttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcc 536 ||||| || ||||| | ||| || || ||| |||| ||||| || | ||||||| ||| Sbjct: 24645 gccttggctttctctagctggatgactcttctctgaagtgggtcgataggatatttctca 24704 Query: 537 tccagtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctca 596 || |||||||||||||| || || ||||| |||||||||| ||||||| ||| || ||| Sbjct: 24705 tcaagtttgtgctcctcaatacatttgataacagctttcaaggcagacaactcgcgttca 24764 Query: 597 tt 598 || Sbjct: 24765 tt 24766 Score = 73.8 bits (37), Expect = 6e-10 Identities = 124/153 (81%) Strand = Plus / Plus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 14802 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 14861 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 14862 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 14921 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || |||||| ||||||| ||||||||||| Sbjct: 14922 agcaccatacacatactgcctctcgtaagggta 14954 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 24356 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 24415 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 24416 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 24475 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || || ||| ||||||| ||||||||||| Sbjct: 24476 agcaccatatacatactgcctctcgtaagggta 24508 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 79 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 137 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 24253 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 24312 Query: 138 ggttaaaagcta 149 |||||||||||| Sbjct: 24313 ggttaaaagcta 24324
>dbj|AK107545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A02, full insert sequence Length = 2131 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Minus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 1600 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 1541 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 1540 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 1481 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 1480 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 1421 Query: 600 at 601 || Sbjct: 1420 at 1419 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 283 ttatcatcgtagggtggtggtgggcttcagcgccgtacacaaactgcctttcgtaagggt 342 ||||||| || || ||||| ||||| ||||| || |||||| ||||||| |||||||||| Sbjct: 1737 ttatcattgtgggatggtgatgggcctcagcaccatacacatactgcctctcgtaagggt 1678 Query: 343 a 343 | Sbjct: 1677 a 1677
>dbj|AK103826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147L19, full insert sequence Length = 2179 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Minus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 1625 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 1566 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 1565 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 1506 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 1505 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 1446 Query: 600 at 601 || Sbjct: 1445 at 1444 Score = 73.8 bits (37), Expect = 6e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 1854 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 1795 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 1794 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 1735 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || |||||| ||||||| ||||||||||| Sbjct: 1734 agcaccatacacatactgcctctcgtaagggta 1702
>dbj|AK060788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D08, full insert sequence Length = 1325 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Minus Query: 420 ttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtccgcc 479 |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 856 ttggcacgaggcctcttagactgtggctttgcagcttcaacagccctcctcttgtctgcc 797 Query: 480 ttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcctcc 539 ||||| ||||| | ||| || || |||||||| || | || | ||||||| ||| || Sbjct: 796 ttagctttctctagctggataactcttttctgaagcaggtcaatcggatatttctcatca 737 Query: 540 agtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctcattc 599 ||||||||||||||||| ||||| || ||||||||| ||||||||||| || |||||| Sbjct: 736 agtttgtgctcctcgatacacttaatagcagctttcaaggcagacagctctcgttcattc 677 Query: 600 at 601 || Sbjct: 676 at 675 Score = 73.8 bits (37), Expect = 6e-10 Identities = 124/153 (81%) Strand = Plus / Minus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| || || | || Sbjct: 1085 ccatcagtggatatatggtacctggtactgaacctgatagccattaccataatatgttgt 1026 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||||||| |||||||| | ||||||| || || ||||| ||||| || Sbjct: 1025 gtgggcaggtgagatgccatagggagctgagcttatcattgtgggatggtgatgggcctc 966 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || |||||| ||||||| ||||||||||| Sbjct: 965 agcaccatacacatactgcctctcgtaagggta 933
>ref|XM_450265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2019 Score = 115 bits (58), Expect = 2e-22 Identities = 151/182 (82%) Strand = Plus / Minus Query: 417 ccgttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtcc 476 ||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct: 1554 ccgttggcacgaggcctcttagactgtggctttccagcttcaacagccctcctcttgtct 1495 Query: 477 gccttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcc 536 ||||| || ||||| | ||| || || ||| |||| ||||| || | ||||||| ||| Sbjct: 1494 gccttggctttctctagctggatgactcttctctgaagtgggtcgataggatatttctca 1435 Query: 537 tccagtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctca 596 || |||||||||||||| || || ||||| |||||||||| ||||||| ||| || ||| Sbjct: 1434 tcaagtttgtgctcctcaatacatttgataacagctttcaaggcagacaactcgcgttca 1375 Query: 597 tt 598 || Sbjct: 1374 tt 1373 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Minus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 1783 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 1724 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 1723 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 1664 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || || ||| ||||||| ||||||||||| Sbjct: 1663 agcaccatatacatactgcctctcgtaagggta 1631 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 79 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 137 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 1886 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 1827 Query: 138 ggttaaaagcta 149 |||||||||||| Sbjct: 1826 ggttaaaagcta 1815
>dbj|AK099919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116K21, full insert sequence Length = 2019 Score = 115 bits (58), Expect = 2e-22 Identities = 151/182 (82%) Strand = Plus / Minus Query: 417 ccgttggcacgcggcctcttggactgtggcttggcggcttcaacagccctcctcttgtcc 476 ||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct: 1554 ccgttggcacgaggcctcttagactgtggctttccagcttcaacagccctcctcttgtct 1495 Query: 477 gccttagccttctccaactgaatcacccttttctggagtggatccacgggatattgctcc 536 ||||| || ||||| | ||| || || ||| |||| ||||| || | ||||||| ||| Sbjct: 1494 gccttggctttctctagctggatgactcttctctgaagtgggtcgataggatatttctca 1435 Query: 537 tccagtttgtgctcctcgatgcacttgatgacagctttcagtgcagacagctcacgctca 596 || |||||||||||||| || || ||||| |||||||||| ||||||| ||| || ||| Sbjct: 1434 tcaagtttgtgctcctcaatacatttgataacagctttcaaggcagacaactcgcgttca 1375 Query: 597 tt 598 || Sbjct: 1374 tt 1373 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Minus Query: 191 ccattagtggatataaggcacctggtactgcaccgggtagccattaccgtagtacggcgt 250 |||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| | || Sbjct: 1783 ccatcagtggatatatggtacctggtactgaacctgatagccattaccatagtatgttgt 1724 Query: 251 gtgggtgggtgagatggtgtagggagcaccgtttatcatcgtagggtggtggtgggcttc 310 ||||| ||||| ||| |||||||| | ||||||| || ||||| || ||||| || Sbjct: 1723 gtgggcaggtgacatgccatagggagctgagcttatcattgttgggtgatgatgggcctc 1664 Query: 311 agcgccgtacacaaactgcctttcgtaagggta 343 ||| || || ||| ||||||| ||||||||||| Sbjct: 1663 agcaccatatacatactgcctctcgtaagggta 1631 Score = 56.0 bits (28), Expect = 1e-04 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 79 aactattttcagctaggcaaactagctagatgactgatacaactacaaca-acagcagaa 137 ||||| ||||||||||||| |||||||| || |||||||||||||||| | || || | Sbjct: 1886 aactaatttcagctaggcagtctagctagtggattgatacaactacaacacatagtagca 1827 Query: 138 ggttaaaagcta 149 |||||||||||| Sbjct: 1826 ggttaaaagcta 1815
>gb|DQ241860.1| Solanum tuberosum clone 021F10 hypothetical protein mRNA, complete cds Length = 1849 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 507 ttctggagtggatccacgggatattgctcctccagtttgtgctcctcgatgcacttgatg 566 |||||||| |||||||| || |||||| |||| ||||| || || ||||||||||| || Sbjct: 1422 ttctggagaggatccacagggtattgcgcctcaagtttatggtcttcgatgcactttatc 1363 Query: 567 acagctttcagtgcagacagct 588 ||||| |||||||||| ||||| Sbjct: 1362 acagccttcagtgcagtcagct 1341
>gb|DQ284456.1| Solanum tuberosum clone 008B02 unknown mRNA Length = 1788 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 507 ttctggagtggatccacgggatattgctcctccagtttgtgctcctcgatgcacttgatg 566 |||||||| ||||||||||| |||||| |||| || || || || ||||||||||| || Sbjct: 1396 ttctggagaggatccacggggtattgcgcctcaagcttatggtcttcgatgcactttatc 1337 Query: 567 acagctttcagtgcagacagct 588 ||||| |||||||||| ||||| Sbjct: 1336 acagccttcagtgcagtcagct 1315
>emb|CR450800.9| Zebrafish DNA sequence from clone DKEY-83F4 in linkage group 8, complete sequence Length = 120875 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 actgatacaactacaacaaca 131 ||||||||||||||||||||| Sbjct: 92554 actgatacaactacaacaaca 92534 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 atgactgatacaactacaacaaca 131 ||||||||||| |||||||||||| Sbjct: 92701 atgactgatactactacaacaaca 92678 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 atgactgatacaactacaacaaca 131 ||||||||||| |||||||||||| Sbjct: 92641 atgactgatactactacaacaaca 92618
>gb|AC099786.2| Homo sapiens chromosome 1 clone RP11-510C10, complete sequence Length = 181443 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 aaataacagattctcacaata 45 ||||||||||||||||||||| Sbjct: 166554 aaataacagattctcacaata 166534
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 tgatacaactacaacaacagcagaa 137 |||||||| |||||||||||||||| Sbjct: 80191 tgatacaagtacaacaacagcagaa 80167
>dbj|AB050476.1| Homo sapiens gene for LIM-homeodomain protein Lhx8, partial cds Length = 11878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 aaataacagattctcacaata 45 ||||||||||||||||||||| Sbjct: 6841 aaataacagattctcacaata 6821
>gb|AY303337.1| Haliotis midae clone HmD60 microsatellite sequence Length = 283 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccctcatagcacacacacac 66 |||||||||||||||||||| Sbjct: 177 ccctcatagcacacacacac 196
>ref|XM_705790.1| Candida albicans SC5314 putative transcription factor (CaO19.9381), mRNA Length = 2523 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tacaactacaacaacagcag 135 |||||||||||||||||||| Sbjct: 173 tacaactacaacaacagcag 192
>ref|XM_705781.1| Candida albicans SC5314 putative transcription factor (CaO19.1822), mRNA Length = 2532 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tacaactacaacaacagcag 135 |||||||||||||||||||| Sbjct: 173 tacaactacaacaacagcag 192
>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11, complete sequence Length = 198600 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 acaactacaacaacagcaga 136 |||||||||||||||||||| Sbjct: 31792 acaactacaacaacagcaga 31811
>ref|XM_808720.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506445.20) partial mRNA Length = 3042 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tacaactacaacaacagcag 135 |||||||||||||||||||| Sbjct: 1559 tacaactacaacaacagcag 1578
>ref|XM_815199.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508277.340) partial mRNA Length = 3054 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tacaactacaacaacagcag 135 |||||||||||||||||||| Sbjct: 1568 tacaactacaacaacagcag 1587
>gb|AC158572.3| Mus musculus chromosome 7, clone RP24-402J3, complete sequence Length = 171722 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 actaaaataacagattctca 40 |||||||||||||||||||| Sbjct: 159839 actaaaataacagattctca 159820
>ref|XM_962841.1| PREDICTED: Tribolium castaneum similar to CG9492-PA (LOC656301), mRNA Length = 13974 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 agccttctccaactgaatca 501 |||||||||||||||||||| Sbjct: 5301 agccttctccaactgaatca 5282
>dbj|AB232921.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBb Length = 80562 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 tgtgctcctcgatgcacttgatga 567 ||||||||||| |||||||||||| Sbjct: 72226 tgtgctcctcgctgcacttgatga 72249
>gb|AC005559.2|AC005559 Homo sapiens chromosome 19, cosmid F18382 (LLNLF-140D2) and 3' overlapping restriction fragment, complete sequence Length = 38911 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 ggcgtgtgggtgggtgagatggtg 269 ||||||||||||| |||||||||| Sbjct: 23400 ggcgtgtgggtggatgagatggtg 23377
>ref|XM_392567.2| PREDICTED: Apis mellifera similar to CG32663-PA (LOC409039), mRNA Length = 2914 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tgactgatacaactacaaca 128 |||||||||||||||||||| Sbjct: 205 tgactgatacaactacaaca 186
>gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complete sequence Length = 181150 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aacaacagcagaaggttaaa 144 |||||||||||||||||||| Sbjct: 66006 aacaacagcagaaggttaaa 65987
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cctggtactgcaccgggtag 230 |||||||||||||||||||| Sbjct: 344918 cctggtactgcaccgggtag 344937
>emb|AL672247.8| Mouse DNA sequence from clone RP23-95I19 on chromosome X, complete sequence Length = 224241 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 agctcttctcggggaagctg 392 |||||||||||||||||||| Sbjct: 173686 agctcttctcggggaagctg 173667 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,346,586 Number of Sequences: 3902068 Number of extensions: 14346586 Number of successful extensions: 105081 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104891 Number of HSP's gapped (non-prelim): 162 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)