ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 450 e-123
2emb|AJ313531.1|ZMA313531 Zea mays mRNA for replication licensing... 369 8e-99
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 204 3e-49
5emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 204 3e-49
6ref|NM_116437.2| Arabidopsis thaliana PRL (PROLIFERA); ATP bindi... 84 7e-13
7gb|L39954.1|ATHPROLI Arabidopsis thaliana PROLIFERA mRNA, comple... 84 7e-13
8emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, c... 76 2e-10
9gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV cosm... 76 2e-10
10gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from ch... 76 2e-10
11gb|BT013038.1| Lycopersicon esculentum clone 114288R, mRNA sequence 68 4e-08
12gb|AY371199.1| Pisum sativum mini-chromosome maintenance 7 (MCM7... 54 6e-04
13gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complet... 46 0.15
14gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, co... 44 0.58
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
16dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17ref|XM_426600.1| PREDICTED: Gallus gallus similar to solute carr... 40 9.0
18gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome... 40 9.0
19gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 40 9.0
20emb|AL355500.20| Human DNA sequence from clone RP11-540N6 on chr... 40 9.0
21gb|BT009454.1| Triticum aestivum clone wlp1c.pk002.o21:fis, full... 40 9.0
22emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 40 9.0
23emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BA... 40 9.0
24emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC... 40 9.0
25gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Ca... 40 9.0
26gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 40 9.0
27gb|AC007839.4|AC007839 Drosophila melanogaster, chromosome 2R, r... 40 9.0
28gb|AC068713.8|AC068713 Homo sapiens chromosome 15 clone RP11-112... 40 9.0
29gb|AC003681.1|AC003681 Human PAC clone RP3-394A18 from 22q12.1-q... 40 9.0
30gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53... 40 9.0
31gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosom... 40 9.0
32gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complet... 40 9.0

>dbj|AK073411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041P20, full
            insert sequence
          Length = 2671

 Score =  450 bits (227), Expect = e-123
 Identities = 392/447 (87%)
 Strand = Plus / Minus

                                                                        
Query: 212  tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271
            |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| ||||||
Sbjct: 2265 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 2206

                                                                        
Query: 272  tcctccaggcattccttcagctgagcctcactgtatccctttctggagatcaggttaaga 331
            ||||||| |||||||||||| |||||||| ||||| |||||||||||||||| |||||| 
Sbjct: 2205 tcctccaagcattccttcagttgagcctcgctgtaaccctttctggagatcaagttaagg 2146

                                                                        
Query: 332  gcatgaccatatttcacatccatgctgctagtccttgctgcttcatctctcaggatggag 391
            |||||| ||||| | |||||||||||| |||| ||||| |||||||||||||| ||||| 
Sbjct: 2145 gcatgagcatatctgacatccatgctgttagttcttgcagcttcatctctcagaatggaa 2086

                                                                        
Query: 392  tatatgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaagcgagtac 451
            ||||||||||| || || ||||  ||||||||||| || ||||| ||||| || ||||||
Sbjct: 2085 tatatgtcagaaatcgcgtccaatccagaccgctggcggtcatctgagtatagggagtac 2026

                                                                        
Query: 452  tttgacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagtttctgaa 511
            ||||||||||||||||  || || || ||||||||||||||||| || || |||||||| 
Sbjct: 2025 tttgacatctgcatcagccgaagcgcttcatcgacatcgctctgagcgacggtttctgag 1966

                                                                        
Query: 512  aatcgaagccttgccaaggcaatcgaaatgcgaactatgctcagaagtgtcctgatggtt 571
            |||| |||||||||||||||||| ||||| || | |||||||| |||||||||||| |||
Sbjct: 1965 aatctaagccttgccaaggcaatagaaatccggagtatgctcaaaagtgtcctgatagtt 1906

                                                                        
Query: 572  gtgtaagaatgaggtgcatttgatttggcttcctcttggcggatgcttgaataggcagtt 631
            ||||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 1905 gtgtaggagtgtggtgcatttgattttgcttcctcttggcggatgctcgaataggcagtt 1846

                                       
Query: 632  gcaatgtattcctcaaggtctcgagga 658
            ||||||||||||||||| |||||||||
Sbjct: 1845 gcaatgtattcctcaagctctcgagga 1819



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>emb|AJ313531.1|ZMA313531 Zea mays mRNA for replication licensing factor MCM7 homologue (MCM7
            gene)
          Length = 2178

 Score =  369 bits (186), Expect = 8e-99
 Identities = 387/454 (85%)
 Strand = Plus / Minus

                                                                        
Query: 205  tcaggcatcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaagga 264
            |||| |||| |||||||||||||| || |||||||| |||||||||||||| |||| |||
Sbjct: 2178 tcagacatcaatgaagtggatgtcaaatgtgcttggatggatctgccacacattcaggga 2119

                                                                        
Query: 265  tgcatactcctccaggcattccttcagctgagcctcactgtatccctttctggagatcag 324
             || || ||||||| |||||||||||  |||||||| |||||||||||||||||||||| 
Sbjct: 2118 agcgtattcctccaagcattccttcaattgagcctcgctgtatccctttctggagatcaa 2059

                                                                        
Query: 325  gttaagagcatgaccatatttcacatccatgctgctagtccttgctgcttcatctctcag 384
            ||||||||| ||| | ||| |||||||||||||||| ||||| || ||||| ||||||||
Sbjct: 2058 gttaagagcgtgagcgtatctcacatccatgctgctcgtcctagcagcttcgtctctcag 1999

                                                                        
Query: 385  gatggagtatatgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaag 444
            |||||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||| | 
Sbjct: 1998 gatggaatatatgtcagatattgcatcaaggccagaccgctggcggtcatctgagtataa 1939

                                                                        
Query: 445  cgagtactttgacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagt 504
             |||||||| ||||| |||||||  || ||||| || |||||||||||||| || |||||
Sbjct: 1938 tgagtacttggacatttgcatcagtcgcagtgcttcgtcgacatcgctctgagccacagt 1879

                                                                        
Query: 505  ttctgaaaatcgaagccttgccaaggcaatcgaaatgcgaactatgctcagaagtgtcct 564
            |||||| || |  || |||||||||||||| || || || | |||||||| |||||| ||
Sbjct: 1878 ttctgagaacctcagtcttgccaaggcaatagagatacggagtatgctcaaaagtgttct 1819

                                                                        
Query: 565  gatggttgtgtaagaatgaggtgcatttgatttggcttcctcttggcggatgcttgaata 624
            ||| |||||||| ||    ||||||||||| || || ||||||||||||||||| |||||
Sbjct: 1818 gatagttgtgtaggaggttggtgcatttgacttcgcctcctcttggcggatgctggaata 1759

                                              
Query: 625  ggcagttgcaatgtattcctcaaggtctcgagga 658
             |||||||||||||||||||| || |||| ||||
Sbjct: 1758 tgcagttgcaatgtattcctcgagctctctagga 1725



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  204 bits (103), Expect = 3e-49
 Identities = 193/223 (86%)
 Strand = Plus / Plus

                                                                            
Query: 309      cctttctggagatcaggttaagagcatgaccatatttcacatccatgctgctagtccttg 368
                ||||||||||||||| |||||| |||||| ||||| | |||||||||||| |||| ||||
Sbjct: 22988336 cctttctggagatcaagttaagggcatgagcatatctgacatccatgctgttagttcttg 22988395

                                                                            
Query: 369      ctgcttcatctctcaggatggagtatatgtcagagattgcatccaggccagaccgctgac 428
                | |||||||||||||| ||||| ||||||||||| || || ||||  ||||||||||| |
Sbjct: 22988396 cagcttcatctctcagaatggaatatatgtcagaaatcgcgtccaatccagaccgctggc 22988455

                                                                            
Query: 429      gatcatcggagtaaagcgagtactttgacatctgcatcaagcgtagtgcctcatcgacat 488
                | ||||| ||||| || ||||||||||||||||||||||  || || || ||||||||||
Sbjct: 22988456 ggtcatctgagtatagggagtactttgacatctgcatcagccgaagcgcttcatcgacat 22988515

                                                           
Query: 489      cgctctgggcaacagtttctgaaaatcgaagccttgccaaggc 531
                ||||||| || || |||||||| |||| |||||||||||||||
Sbjct: 22988516 cgctctgagcgacggtttctgagaatctaagccttgccaaggc 22988558



 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Plus

                                                                            
Query: 547      tatgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctc 606
                |||||||| |||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 22988660 tatgctcaaaagtgtcctgatagttgtgtaggagtgtggtgcatttgattttgcttcctc 22988719

                                                                    
Query: 607      ttggcggatgcttgaataggcagttgcaatgtattcctcaaggtctcgagga 658
                |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 22988720 ttggcggatgctcgaataggcagttgcaatgtattcctcaagctctcgagga 22988771



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                            
Query: 212      tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271
                |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| ||||||
Sbjct: 22988126 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 22988185

                                                        
Query: 272      tcctccaggcattccttcagctgagcctcactgtatccct 311
                ||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 22988186 tcctccaagcattccttcagttgagcctcgctgtaaccct 22988225



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  204 bits (103), Expect = 3e-49
 Identities = 193/223 (86%)
 Strand = Plus / Plus

                                                                            
Query: 309      cctttctggagatcaggttaagagcatgaccatatttcacatccatgctgctagtccttg 368
                ||||||||||||||| |||||| |||||| ||||| | |||||||||||| |||| ||||
Sbjct: 22916527 cctttctggagatcaagttaagggcatgagcatatctgacatccatgctgttagttcttg 22916586

                                                                            
Query: 369      ctgcttcatctctcaggatggagtatatgtcagagattgcatccaggccagaccgctgac 428
                | |||||||||||||| ||||| ||||||||||| || || ||||  ||||||||||| |
Sbjct: 22916587 cagcttcatctctcagaatggaatatatgtcagaaatcgcgtccaatccagaccgctggc 22916646

                                                                            
Query: 429      gatcatcggagtaaagcgagtactttgacatctgcatcaagcgtagtgcctcatcgacat 488
                | ||||| ||||| || ||||||||||||||||||||||  || || || ||||||||||
Sbjct: 22916647 ggtcatctgagtatagggagtactttgacatctgcatcagccgaagcgcttcatcgacat 22916706

                                                           
Query: 489      cgctctgggcaacagtttctgaaaatcgaagccttgccaaggc 531
                ||||||| || || |||||||| |||| |||||||||||||||
Sbjct: 22916707 cgctctgagcgacggtttctgagaatctaagccttgccaaggc 22916749



 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Plus

                                                                            
Query: 547      tatgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctc 606
                |||||||| |||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 22916851 tatgctcaaaagtgtcctgatagttgtgtaggagtgtggtgcatttgattttgcttcctc 22916910

                                                                    
Query: 607      ttggcggatgcttgaataggcagttgcaatgtattcctcaaggtctcgagga 658
                |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 22916911 ttggcggatgctcgaataggcagttgcaatgtattcctcaagctctcgagga 22916962



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                            
Query: 212      tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271
                |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| ||||||
Sbjct: 22916317 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 22916376

                                                        
Query: 272      tcctccaggcattccttcagctgagcctcactgtatccct 311
                ||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 22916377 tcctccaagcattccttcagttgagcctcgctgtaaccct 22916416



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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  204 bits (103), Expect = 3e-49
 Identities = 193/223 (86%)
 Strand = Plus / Plus

                                                                         
Query: 309   cctttctggagatcaggttaagagcatgaccatatttcacatccatgctgctagtccttg 368
             ||||||||||||||| |||||| |||||| ||||| | |||||||||||| |||| ||||
Sbjct: 97613 cctttctggagatcaagttaagggcatgagcatatctgacatccatgctgttagttcttg 97672

                                                                         
Query: 369   ctgcttcatctctcaggatggagtatatgtcagagattgcatccaggccagaccgctgac 428
             | |||||||||||||| ||||| ||||||||||| || || ||||  ||||||||||| |
Sbjct: 97673 cagcttcatctctcagaatggaatatatgtcagaaatcgcgtccaatccagaccgctggc 97732

                                                                         
Query: 429   gatcatcggagtaaagcgagtactttgacatctgcatcaagcgtagtgcctcatcgacat 488
             | ||||| ||||| || ||||||||||||||||||||||  || || || ||||||||||
Sbjct: 97733 ggtcatctgagtatagggagtactttgacatctgcatcagccgaagcgcttcatcgacat 97792

                                                        
Query: 489   cgctctgggcaacagtttctgaaaatcgaagccttgccaaggc 531
             ||||||| || || |||||||| |||| |||||||||||||||
Sbjct: 97793 cgctctgagcgacggtttctgagaatctaagccttgccaaggc 97835



 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Plus

                                                                         
Query: 547   tatgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctc 606
             |||||||| |||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 97937 tatgctcaaaagtgtcctgatagttgtgtaggagtgtggtgcatttgattttgcttcctc 97996

                                                                 
Query: 607   ttggcggatgcttgaataggcagttgcaatgtattcctcaaggtctcgagga 658
             |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 97997 ttggcggatgctcgaataggcagttgcaatgtattcctcaagctctcgagga 98048



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                         
Query: 212   tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271
             |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| ||||||
Sbjct: 97403 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 97462

                                                     
Query: 272   tcctccaggcattccttcagctgagcctcactgtatccct 311
             ||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 97463 tcctccaagcattccttcagttgagcctcgctgtaaccct 97502



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>ref|NM_116437.2| Arabidopsis thaliana PRL (PROLIFERA); ATP binding / DNA binding /
            DNA-dependent ATPase AT4G02060 (PRL) mRNA, complete cds
          Length = 2540

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304
            |||||||| || ||||| | |||||| |||||||  || ||||| |||||||||||||||
Sbjct: 2213 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 2154

                              
Query: 305  tatccctttctggagatc 322
            ||||||||||||||||||
Sbjct: 2153 tatccctttctggagatc 2136



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607
            ||||| || |||||||| |  ||||||||||||||||| | ||||||||| ||||| |||
Sbjct: 1910 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 1851

                                                  
Query: 608  tggcggatgcttgaataggcagttgcaatgtattcctc 645
            || | |||||| ||||| |||||||| || ||||||||
Sbjct: 1850 tgcctgatgctggaataagcagttgctatatattcctc 1813



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>gb|L39954.1|ATHPROLI Arabidopsis thaliana PROLIFERA mRNA, complete cds
          Length = 2431

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304
            |||||||| || ||||| | |||||| |||||||  || ||||| |||||||||||||||
Sbjct: 2214 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 2155

                              
Query: 305  tatccctttctggagatc 322
            ||||||||||||||||||
Sbjct: 2154 tatccctttctggagatc 2137



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607
            ||||| || |||||||| |  ||||||||||||||||| |  |||||||| ||||| |||
Sbjct: 1911 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtgtttgatttcgcttcttct 1852

                                                  
Query: 608  tggcggatgcttgaataggcagttgcaatgtattcctc 645
            || | |||||| ||||| |||||||| || ||||||||
Sbjct: 1851 tgcctgatgctggaataagcagttgctatatattcctc 1814



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>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5
          Length = 198220

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                          
Query: 548    atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607
              ||||| || |||||||| |  ||||||||||||||||| | ||||||||| ||||| |||
Sbjct: 133666 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 133607

                                                    
Query: 608    tggcggatgcttgaataggcagttgcaatgtattcctc 645
              || | |||||| ||||| |||||||| || ||||||||
Sbjct: 133606 tgcctgatgctggaataagcagttgctatatattcctc 133569



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                          
Query: 245    atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304
              |||||||| || ||||| | |||||| |||||||  || ||||| |||||||||||||||
Sbjct: 134132 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 134073

                     
Query: 305    tatccct 311
              |||||||
Sbjct: 134072 tatccct 134066



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>gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV cosmid AGAA, complete sequence
          Length = 27502

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                        
Query: 548  atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607
            ||||| || |||||||| |  ||||||||||||||||| | ||||||||| ||||| |||
Sbjct: 5568 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 5509

                                                  
Query: 608  tggcggatgcttgaataggcagttgcaatgtattcctc 645
            || | |||||| ||||| |||||||| || ||||||||
Sbjct: 5508 tgcctgatgctggaataagcagttgctatatattcctc 5471



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 245  atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304
            |||||||| || ||||| | |||||| |||||||  || ||||| |||||||||||||||
Sbjct: 6034 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 5975

                   
Query: 305  tatccct 311
            |||||||
Sbjct: 5974 tatccct 5968



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>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to
             11.6 cM, complete sequence
          Length = 105654

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                         
Query: 548   atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607
             ||||| || |||||||| |  ||||||||||||||||| | ||||||||| ||||| |||
Sbjct: 31062 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 31003

                                                   
Query: 608   tggcggatgcttgaataggcagttgcaatgtattcctc 645
             || | |||||| ||||| |||||||| || ||||||||
Sbjct: 31002 tgcctgatgctggaataagcagttgctatatattcctc 30965



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 245   atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304
             |||||||| || ||||| | |||||| |||||||  || ||||| |||||||||||||||
Sbjct: 31528 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 31469

                    
Query: 305   tatccct 311
             |||||||
Sbjct: 31468 tatccct 31462



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>gb|BT013038.1| Lycopersicon esculentum clone 114288R, mRNA sequence
          Length = 2490

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 245  atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304
            ||||||||||| || |||| |||||| || ||||  |||||||| || ||||| ||||||
Sbjct: 2159 atctgccacacatttaaggctgcatattcttccaaacattccttgagttgagcttcactg 2100

                          
Query: 305  tatccctttctgga 318
            ||||||||||||||
Sbjct: 2099 tatccctttctgga 2086



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 395  atgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaagcgagtacttt 454
            |||||||| ||||||||||||||||| |  || |||||||| || || |  ||| |||| 
Sbjct: 2009 atgtcagatattgcatccaggccagatctttgccgatcatctgaatacaaggagaacttc 1950

                                                                    
Query: 455  gacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagtttctga 510
            ||||||||||| || || || |||||||| ||||| ||||| |||||  |||||||
Sbjct: 1949 gacatctgcattaaccgaagcgcctcatccacatcactctgagcaactttttctga 1894



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>gb|AY371199.1| Pisum sativum mini-chromosome maintenance 7 (MCM7) mRNA, complete cds
          Length = 2582

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                        
Query: 389  gagtatatgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaagcgag 448
            ||||| |||||||| || |||||||| |||||||  || || ||||| ||||| |  |||
Sbjct: 2037 gagtaaatgtcagatatagcatccagaccagacctttgtcggtcatcagagtacaaagag 1978

                                                                       
Query: 449  tactttgacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagtttc 507
             | |||||||||||||| || |  | ||||||||| || || ||||| |||||||||||
Sbjct: 1977 aattttgacatctgcattaacctcaatgcctcatcaacgtcactctgagcaacagtttc 1919



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>gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complete sequence
          Length = 160930

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 352   catgctgctagtccttgctgctt 374
             |||||||||||||||||||||||
Sbjct: 69767 catgctgctagtccttgctgctt 69789



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>gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, complete sequence
          Length = 155376

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 29    aaacaaacataacagagttaca 50
             ||||||||||||||||||||||
Sbjct: 37182 aaacaaacataacagagttaca 37161



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 348      catccatgctgctagtccttg 368
                |||||||||||||||||||||
Sbjct: 37653515 catccatgctgctagtccttg 37653535



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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    catccatgctgctagtccttg 368
              |||||||||||||||||||||
Sbjct: 113989 catccatgctgctagtccttg 114009



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>ref|XM_426600.1| PREDICTED: Gallus gallus similar to solute carrier family 15
           (H+/peptide transporter), member 2; proton-dependent
           high affinity oligopeptide transporter PepT2
           (LOC429043), mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 tcccaaacaatggcatcagg 209
           ||||||||||||||||||||
Sbjct: 110 tcccaaacaatggcatcagg 129



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>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence
          Length = 199958

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aaaggctcctgcatggttca 115
             ||||||||||||||||||||
Sbjct: 90788 aaaggctcctgcatggttca 90807



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>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aacataacagagttacatat 53
             ||||||||||||||||||||
Sbjct: 36333 aacataacagagttacatat 36352



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>emb|AL355500.20| Human DNA sequence from clone RP11-540N6 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 114694

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   attccttcagctgagcctca 301
             ||||||||||||||||||||
Sbjct: 80285 attccttcagctgagcctca 80266



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>gb|BT009454.1| Triticum aestivum clone wlp1c.pk002.o21:fis, full insert mRNA
           sequence
          Length = 1743

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 ctcctccaggcattccttca 290
           ||||||||||||||||||||
Sbjct: 516 ctcctccaggcattccttca 535



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>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tctttcgatcttgttagatc 191
             ||||||||||||||||||||
Sbjct: 20842 tctttcgatcttgttagatc 20861



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>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
          Length = 137519

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tctttcgatcttgttagatc 191
             ||||||||||||||||||||
Sbjct: 16310 tctttcgatcttgttagatc 16329



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>emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project)
          Length = 85356

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tctttcgatcttgttagatc 191
             ||||||||||||||||||||
Sbjct: 82812 tctttcgatcttgttagatc 82831



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>gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152449

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   ttccttcagctgagcctcac 302
             ||||||||||||||||||||
Sbjct: 65263 ttccttcagctgagcctcac 65244



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>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 173810

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    tctctcaggatggagtatat 396
              ||||||||||||||||||||
Sbjct: 166996 tctctcaggatggagtatat 167015



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>gb|AC007839.4|AC007839 Drosophila melanogaster, chromosome 2R, region 56B1-56C4, BAC clone
             BACR01N09, complete sequence
          Length = 161172

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   agtttctgaaaatcgaagcc 521
             ||||||||||||||||||||
Sbjct: 68963 agtttctgaaaatcgaagcc 68982



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>gb|AC068713.8|AC068713 Homo sapiens chromosome 15 clone RP11-1129I3 map 15q21.3, complete
             sequence
          Length = 132724

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   agaagtgtcctgatggttgt 573
             ||||||||||||||||||||
Sbjct: 77765 agaagtgtcctgatggttgt 77746



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>gb|AC003681.1|AC003681 Human PAC clone RP3-394A18 from 22q12.1-qter, complete sequence
          Length = 88528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgctgaaaagggacaaaggc 101
             ||||||||||||||||||||
Sbjct: 75977 tgctgaaaagggacaaaggc 75996



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>gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53 of 73 of the complete
              sequence
          Length = 306854

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    agtttctgaaaatcgaagcc 521
              ||||||||||||||||||||
Sbjct: 251799 agtttctgaaaatcgaagcc 251818



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>gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosome 16, complete
            sequence
          Length = 171458

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   aacataacagagttacatat 53
            ||||||||||||||||||||
Sbjct: 7105 aacataacagagttacatat 7086



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>gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complete sequence
          Length = 218340

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aaaggctcctgcatggttca 115
             ||||||||||||||||||||
Sbjct: 22269 aaaggctcctgcatggttca 22288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,375,145
Number of Sequences: 3902068
Number of extensions: 5375145
Number of successful extensions: 91948
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91801
Number of HSP's gapped (non-prelim): 146
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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