| Clone Name | rbags24m03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041P20, full insert sequence Length = 2671 Score = 450 bits (227), Expect = e-123 Identities = 392/447 (87%) Strand = Plus / Minus Query: 212 tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271 |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| |||||| Sbjct: 2265 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 2206 Query: 272 tcctccaggcattccttcagctgagcctcactgtatccctttctggagatcaggttaaga 331 ||||||| |||||||||||| |||||||| ||||| |||||||||||||||| |||||| Sbjct: 2205 tcctccaagcattccttcagttgagcctcgctgtaaccctttctggagatcaagttaagg 2146 Query: 332 gcatgaccatatttcacatccatgctgctagtccttgctgcttcatctctcaggatggag 391 |||||| ||||| | |||||||||||| |||| ||||| |||||||||||||| ||||| Sbjct: 2145 gcatgagcatatctgacatccatgctgttagttcttgcagcttcatctctcagaatggaa 2086 Query: 392 tatatgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaagcgagtac 451 ||||||||||| || || |||| ||||||||||| || ||||| ||||| || |||||| Sbjct: 2085 tatatgtcagaaatcgcgtccaatccagaccgctggcggtcatctgagtatagggagtac 2026 Query: 452 tttgacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagtttctgaa 511 |||||||||||||||| || || || ||||||||||||||||| || || |||||||| Sbjct: 2025 tttgacatctgcatcagccgaagcgcttcatcgacatcgctctgagcgacggtttctgag 1966 Query: 512 aatcgaagccttgccaaggcaatcgaaatgcgaactatgctcagaagtgtcctgatggtt 571 |||| |||||||||||||||||| ||||| || | |||||||| |||||||||||| ||| Sbjct: 1965 aatctaagccttgccaaggcaatagaaatccggagtatgctcaaaagtgtcctgatagtt 1906 Query: 572 gtgtaagaatgaggtgcatttgatttggcttcctcttggcggatgcttgaataggcagtt 631 ||||| || || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 1905 gtgtaggagtgtggtgcatttgattttgcttcctcttggcggatgctcgaataggcagtt 1846 Query: 632 gcaatgtattcctcaaggtctcgagga 658 ||||||||||||||||| ||||||||| Sbjct: 1845 gcaatgtattcctcaagctctcgagga 1819
>emb|AJ313531.1|ZMA313531 Zea mays mRNA for replication licensing factor MCM7 homologue (MCM7 gene) Length = 2178 Score = 369 bits (186), Expect = 8e-99 Identities = 387/454 (85%) Strand = Plus / Minus Query: 205 tcaggcatcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaagga 264 |||| |||| |||||||||||||| || |||||||| |||||||||||||| |||| ||| Sbjct: 2178 tcagacatcaatgaagtggatgtcaaatgtgcttggatggatctgccacacattcaggga 2119 Query: 265 tgcatactcctccaggcattccttcagctgagcctcactgtatccctttctggagatcag 324 || || ||||||| ||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 2118 agcgtattcctccaagcattccttcaattgagcctcgctgtatccctttctggagatcaa 2059 Query: 325 gttaagagcatgaccatatttcacatccatgctgctagtccttgctgcttcatctctcag 384 ||||||||| ||| | ||| |||||||||||||||| ||||| || ||||| |||||||| Sbjct: 2058 gttaagagcgtgagcgtatctcacatccatgctgctcgtcctagcagcttcgtctctcag 1999 Query: 385 gatggagtatatgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaag 444 |||||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||| | Sbjct: 1998 gatggaatatatgtcagatattgcatcaaggccagaccgctggcggtcatctgagtataa 1939 Query: 445 cgagtactttgacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagt 504 |||||||| ||||| ||||||| || ||||| || |||||||||||||| || ||||| Sbjct: 1938 tgagtacttggacatttgcatcagtcgcagtgcttcgtcgacatcgctctgagccacagt 1879 Query: 505 ttctgaaaatcgaagccttgccaaggcaatcgaaatgcgaactatgctcagaagtgtcct 564 |||||| || | || |||||||||||||| || || || | |||||||| |||||| || Sbjct: 1878 ttctgagaacctcagtcttgccaaggcaatagagatacggagtatgctcaaaagtgttct 1819 Query: 565 gatggttgtgtaagaatgaggtgcatttgatttggcttcctcttggcggatgcttgaata 624 ||| |||||||| || ||||||||||| || || ||||||||||||||||| ||||| Sbjct: 1818 gatagttgtgtaggaggttggtgcatttgacttcgcctcctcttggcggatgctggaata 1759 Query: 625 ggcagttgcaatgtattcctcaaggtctcgagga 658 |||||||||||||||||||| || |||| |||| Sbjct: 1758 tgcagttgcaatgtattcctcgagctctctagga 1725
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 204 bits (103), Expect = 3e-49 Identities = 193/223 (86%) Strand = Plus / Plus Query: 309 cctttctggagatcaggttaagagcatgaccatatttcacatccatgctgctagtccttg 368 ||||||||||||||| |||||| |||||| ||||| | |||||||||||| |||| |||| Sbjct: 22988336 cctttctggagatcaagttaagggcatgagcatatctgacatccatgctgttagttcttg 22988395 Query: 369 ctgcttcatctctcaggatggagtatatgtcagagattgcatccaggccagaccgctgac 428 | |||||||||||||| ||||| ||||||||||| || || |||| ||||||||||| | Sbjct: 22988396 cagcttcatctctcagaatggaatatatgtcagaaatcgcgtccaatccagaccgctggc 22988455 Query: 429 gatcatcggagtaaagcgagtactttgacatctgcatcaagcgtagtgcctcatcgacat 488 | ||||| ||||| || |||||||||||||||||||||| || || || |||||||||| Sbjct: 22988456 ggtcatctgagtatagggagtactttgacatctgcatcagccgaagcgcttcatcgacat 22988515 Query: 489 cgctctgggcaacagtttctgaaaatcgaagccttgccaaggc 531 ||||||| || || |||||||| |||| ||||||||||||||| Sbjct: 22988516 cgctctgagcgacggtttctgagaatctaagccttgccaaggc 22988558 Score = 159 bits (80), Expect = 1e-35 Identities = 104/112 (92%) Strand = Plus / Plus Query: 547 tatgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctc 606 |||||||| |||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 22988660 tatgctcaaaagtgtcctgatagttgtgtaggagtgtggtgcatttgattttgcttcctc 22988719 Query: 607 ttggcggatgcttgaataggcagttgcaatgtattcctcaaggtctcgagga 658 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 22988720 ttggcggatgctcgaataggcagttgcaatgtattcctcaagctctcgagga 22988771 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 212 tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271 |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| |||||| Sbjct: 22988126 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 22988185 Query: 272 tcctccaggcattccttcagctgagcctcactgtatccct 311 ||||||| |||||||||||| |||||||| ||||| |||| Sbjct: 22988186 tcctccaagcattccttcagttgagcctcgctgtaaccct 22988225
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 204 bits (103), Expect = 3e-49 Identities = 193/223 (86%) Strand = Plus / Plus Query: 309 cctttctggagatcaggttaagagcatgaccatatttcacatccatgctgctagtccttg 368 ||||||||||||||| |||||| |||||| ||||| | |||||||||||| |||| |||| Sbjct: 22916527 cctttctggagatcaagttaagggcatgagcatatctgacatccatgctgttagttcttg 22916586 Query: 369 ctgcttcatctctcaggatggagtatatgtcagagattgcatccaggccagaccgctgac 428 | |||||||||||||| ||||| ||||||||||| || || |||| ||||||||||| | Sbjct: 22916587 cagcttcatctctcagaatggaatatatgtcagaaatcgcgtccaatccagaccgctggc 22916646 Query: 429 gatcatcggagtaaagcgagtactttgacatctgcatcaagcgtagtgcctcatcgacat 488 | ||||| ||||| || |||||||||||||||||||||| || || || |||||||||| Sbjct: 22916647 ggtcatctgagtatagggagtactttgacatctgcatcagccgaagcgcttcatcgacat 22916706 Query: 489 cgctctgggcaacagtttctgaaaatcgaagccttgccaaggc 531 ||||||| || || |||||||| |||| ||||||||||||||| Sbjct: 22916707 cgctctgagcgacggtttctgagaatctaagccttgccaaggc 22916749 Score = 159 bits (80), Expect = 1e-35 Identities = 104/112 (92%) Strand = Plus / Plus Query: 547 tatgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctc 606 |||||||| |||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 22916851 tatgctcaaaagtgtcctgatagttgtgtaggagtgtggtgcatttgattttgcttcctc 22916910 Query: 607 ttggcggatgcttgaataggcagttgcaatgtattcctcaaggtctcgagga 658 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 22916911 ttggcggatgctcgaataggcagttgcaatgtattcctcaagctctcgagga 22916962 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 212 tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271 |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| |||||| Sbjct: 22916317 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 22916376 Query: 272 tcctccaggcattccttcagctgagcctcactgtatccct 311 ||||||| |||||||||||| |||||||| ||||| |||| Sbjct: 22916377 tcctccaagcattccttcagttgagcctcgctgtaaccct 22916416
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 204 bits (103), Expect = 3e-49 Identities = 193/223 (86%) Strand = Plus / Plus Query: 309 cctttctggagatcaggttaagagcatgaccatatttcacatccatgctgctagtccttg 368 ||||||||||||||| |||||| |||||| ||||| | |||||||||||| |||| |||| Sbjct: 97613 cctttctggagatcaagttaagggcatgagcatatctgacatccatgctgttagttcttg 97672 Query: 369 ctgcttcatctctcaggatggagtatatgtcagagattgcatccaggccagaccgctgac 428 | |||||||||||||| ||||| ||||||||||| || || |||| ||||||||||| | Sbjct: 97673 cagcttcatctctcagaatggaatatatgtcagaaatcgcgtccaatccagaccgctggc 97732 Query: 429 gatcatcggagtaaagcgagtactttgacatctgcatcaagcgtagtgcctcatcgacat 488 | ||||| ||||| || |||||||||||||||||||||| || || || |||||||||| Sbjct: 97733 ggtcatctgagtatagggagtactttgacatctgcatcagccgaagcgcttcatcgacat 97792 Query: 489 cgctctgggcaacagtttctgaaaatcgaagccttgccaaggc 531 ||||||| || || |||||||| |||| ||||||||||||||| Sbjct: 97793 cgctctgagcgacggtttctgagaatctaagccttgccaaggc 97835 Score = 159 bits (80), Expect = 1e-35 Identities = 104/112 (92%) Strand = Plus / Plus Query: 547 tatgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctc 606 |||||||| |||||||||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 97937 tatgctcaaaagtgtcctgatagttgtgtaggagtgtggtgcatttgattttgcttcctc 97996 Query: 607 ttggcggatgcttgaataggcagttgcaatgtattcctcaaggtctcgagga 658 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 97997 ttggcggatgctcgaataggcagttgcaatgtattcctcaagctctcgagga 98048 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 212 tcgatgaagtggatgtcgaaggtgcttgggtggatctgccacacgttcaaggatgcatac 271 |||||||| ||||| || |||||| | |||||||||||||| || |||| ||| |||||| Sbjct: 97403 tcgatgaaatggatatcaaaggtgttggggtggatctgccaaacattcagggaagcatac 97462 Query: 272 tcctccaggcattccttcagctgagcctcactgtatccct 311 ||||||| |||||||||||| |||||||| ||||| |||| Sbjct: 97463 tcctccaagcattccttcagttgagcctcgctgtaaccct 97502
>ref|NM_116437.2| Arabidopsis thaliana PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase AT4G02060 (PRL) mRNA, complete cds Length = 2540 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 245 atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304 |||||||| || ||||| | |||||| ||||||| || ||||| ||||||||||||||| Sbjct: 2213 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 2154 Query: 305 tatccctttctggagatc 322 |||||||||||||||||| Sbjct: 2153 tatccctttctggagatc 2136 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 548 atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607 ||||| || |||||||| | ||||||||||||||||| | ||||||||| ||||| ||| Sbjct: 1910 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 1851 Query: 608 tggcggatgcttgaataggcagttgcaatgtattcctc 645 || | |||||| ||||| |||||||| || |||||||| Sbjct: 1850 tgcctgatgctggaataagcagttgctatatattcctc 1813
>gb|L39954.1|ATHPROLI Arabidopsis thaliana PROLIFERA mRNA, complete cds Length = 2431 Score = 83.8 bits (42), Expect = 7e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 245 atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304 |||||||| || ||||| | |||||| ||||||| || ||||| ||||||||||||||| Sbjct: 2214 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 2155 Query: 305 tatccctttctggagatc 322 |||||||||||||||||| Sbjct: 2154 tatccctttctggagatc 2137 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 548 atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607 ||||| || |||||||| | ||||||||||||||||| | |||||||| ||||| ||| Sbjct: 1911 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtgtttgatttcgcttcttct 1852 Query: 608 tggcggatgcttgaataggcagttgcaatgtattcctc 645 || | |||||| ||||| |||||||| || |||||||| Sbjct: 1851 tgcctgatgctggaataagcagttgctatatattcctc 1814
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 548 atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607 ||||| || |||||||| | ||||||||||||||||| | ||||||||| ||||| ||| Sbjct: 133666 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 133607 Query: 608 tggcggatgcttgaataggcagttgcaatgtattcctc 645 || | |||||| ||||| |||||||| || |||||||| Sbjct: 133606 tgcctgatgctggaataagcagttgctatatattcctc 133569 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 245 atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304 |||||||| || ||||| | |||||| ||||||| || ||||| ||||||||||||||| Sbjct: 134132 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 134073 Query: 305 tatccct 311 ||||||| Sbjct: 134072 tatccct 134066
>gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV cosmid AGAA, complete sequence Length = 27502 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 548 atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607 ||||| || |||||||| | ||||||||||||||||| | ||||||||| ||||| ||| Sbjct: 5568 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 5509 Query: 608 tggcggatgcttgaataggcagttgcaatgtattcctc 645 || | |||||| ||||| |||||||| || |||||||| Sbjct: 5508 tgcctgatgctggaataagcagttgctatatattcctc 5471 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 245 atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304 |||||||| || ||||| | |||||| ||||||| || ||||| ||||||||||||||| Sbjct: 6034 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 5975 Query: 305 tatccct 311 ||||||| Sbjct: 5974 tatccct 5968
>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to 11.6 cM, complete sequence Length = 105654 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 548 atgctcagaagtgtcctgatggttgtgtaagaatgaggtgcatttgatttggcttcctct 607 ||||| || |||||||| | ||||||||||||||||| | ||||||||| ||||| ||| Sbjct: 31062 atgctgagcagtgtcctcactgttgtgtaagaatgaggagtatttgatttcgcttcttct 31003 Query: 608 tggcggatgcttgaataggcagttgcaatgtattcctc 645 || | |||||| ||||| |||||||| || |||||||| Sbjct: 31002 tgcctgatgctggaataagcagttgctatatattcctc 30965 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 245 atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304 |||||||| || ||||| | |||||| ||||||| || ||||| ||||||||||||||| Sbjct: 31528 atctgccaaacattcaaagctgcatattcctccaaacactcctttagctgagcctcactg 31469 Query: 305 tatccct 311 ||||||| Sbjct: 31468 tatccct 31462
>gb|BT013038.1| Lycopersicon esculentum clone 114288R, mRNA sequence Length = 2490 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 245 atctgccacacgttcaaggatgcatactcctccaggcattccttcagctgagcctcactg 304 ||||||||||| || |||| |||||| || |||| |||||||| || ||||| |||||| Sbjct: 2159 atctgccacacatttaaggctgcatattcttccaaacattccttgagttgagcttcactg 2100 Query: 305 tatccctttctgga 318 |||||||||||||| Sbjct: 2099 tatccctttctgga 2086 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 395 atgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaagcgagtacttt 454 |||||||| ||||||||||||||||| | || |||||||| || || | ||| |||| Sbjct: 2009 atgtcagatattgcatccaggccagatctttgccgatcatctgaatacaaggagaacttc 1950 Query: 455 gacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagtttctga 510 ||||||||||| || || || |||||||| ||||| ||||| ||||| ||||||| Sbjct: 1949 gacatctgcattaaccgaagcgcctcatccacatcactctgagcaactttttctga 1894
>gb|AY371199.1| Pisum sativum mini-chromosome maintenance 7 (MCM7) mRNA, complete cds Length = 2582 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 389 gagtatatgtcagagattgcatccaggccagaccgctgacgatcatcggagtaaagcgag 448 ||||| |||||||| || |||||||| ||||||| || || ||||| ||||| | ||| Sbjct: 2037 gagtaaatgtcagatatagcatccagaccagacctttgtcggtcatcagagtacaaagag 1978 Query: 449 tactttgacatctgcatcaagcgtagtgcctcatcgacatcgctctgggcaacagtttc 507 | |||||||||||||| || | | ||||||||| || || ||||| ||||||||||| Sbjct: 1977 aattttgacatctgcattaacctcaatgcctcatcaacgtcactctgagcaacagtttc 1919
>gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complete sequence Length = 160930 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 352 catgctgctagtccttgctgctt 374 ||||||||||||||||||||||| Sbjct: 69767 catgctgctagtccttgctgctt 69789
>gb|AC027026.11| Homo sapiens chromosome 11, clone RP11-589F4, complete sequence Length = 155376 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aaacaaacataacagagttaca 50 |||||||||||||||||||||| Sbjct: 37182 aaacaaacataacagagttaca 37161
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 catccatgctgctagtccttg 368 ||||||||||||||||||||| Sbjct: 37653515 catccatgctgctagtccttg 37653535
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 catccatgctgctagtccttg 368 ||||||||||||||||||||| Sbjct: 113989 catccatgctgctagtccttg 114009
>ref|XM_426600.1| PREDICTED: Gallus gallus similar to solute carrier family 15 (H+/peptide transporter), member 2; proton-dependent high affinity oligopeptide transporter PepT2 (LOC429043), mRNA Length = 1026 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tcccaaacaatggcatcagg 209 |||||||||||||||||||| Sbjct: 110 tcccaaacaatggcatcagg 129
>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence Length = 199958 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aaaggctcctgcatggttca 115 |||||||||||||||||||| Sbjct: 90788 aaaggctcctgcatggttca 90807
>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence Length = 238516 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aacataacagagttacatat 53 |||||||||||||||||||| Sbjct: 36333 aacataacagagttacatat 36352
>emb|AL355500.20| Human DNA sequence from clone RP11-540N6 on chromosome 10 Contains a novel gene, complete sequence Length = 114694 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 attccttcagctgagcctca 301 |||||||||||||||||||| Sbjct: 80285 attccttcagctgagcctca 80266
>gb|BT009454.1| Triticum aestivum clone wlp1c.pk002.o21:fis, full insert mRNA sequence Length = 1743 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ctcctccaggcattccttca 290 |||||||||||||||||||| Sbjct: 516 ctcctccaggcattccttca 535
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tctttcgatcttgttagatc 191 |||||||||||||||||||| Sbjct: 20842 tctttcgatcttgttagatc 20861
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project) Length = 137519 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tctttcgatcttgttagatc 191 |||||||||||||||||||| Sbjct: 16310 tctttcgatcttgttagatc 16329
>emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project) Length = 85356 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tctttcgatcttgttagatc 191 |||||||||||||||||||| Sbjct: 82812 tctttcgatcttgttagatc 82831
>gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152449 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ttccttcagctgagcctcac 302 |||||||||||||||||||| Sbjct: 65263 ttccttcagctgagcctcac 65244
>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 173810 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tctctcaggatggagtatat 396 |||||||||||||||||||| Sbjct: 166996 tctctcaggatggagtatat 167015
>gb|AC007839.4|AC007839 Drosophila melanogaster, chromosome 2R, region 56B1-56C4, BAC clone BACR01N09, complete sequence Length = 161172 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 agtttctgaaaatcgaagcc 521 |||||||||||||||||||| Sbjct: 68963 agtttctgaaaatcgaagcc 68982
>gb|AC068713.8|AC068713 Homo sapiens chromosome 15 clone RP11-1129I3 map 15q21.3, complete sequence Length = 132724 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 agaagtgtcctgatggttgt 573 |||||||||||||||||||| Sbjct: 77765 agaagtgtcctgatggttgt 77746
>gb|AC003681.1|AC003681 Human PAC clone RP3-394A18 from 22q12.1-qter, complete sequence Length = 88528 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tgctgaaaagggacaaaggc 101 |||||||||||||||||||| Sbjct: 75977 tgctgaaaagggacaaaggc 75996
>gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53 of 73 of the complete sequence Length = 306854 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 agtttctgaaaatcgaagcc 521 |||||||||||||||||||| Sbjct: 251799 agtttctgaaaatcgaagcc 251818
>gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosome 16, complete sequence Length = 171458 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aacataacagagttacatat 53 |||||||||||||||||||| Sbjct: 7105 aacataacagagttacatat 7086
>gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complete sequence Length = 218340 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aaaggctcctgcatggttca 115 |||||||||||||||||||| Sbjct: 22269 aaaggctcctgcatggttca 22288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,375,145 Number of Sequences: 3902068 Number of extensions: 5375145 Number of successful extensions: 91948 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91801 Number of HSP's gapped (non-prelim): 146 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)