ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25b01 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 195 bits (496), Expect = 6e-50 Identities = 98/103 (95%), Positives = 101/103 (98%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YLQPHFRY+MREVRTVVYSQFLESYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCK Sbjct: 287 YLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCK 346 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 239 IDKVA VLETNRPDARNAFYQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 347 IDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLSRVIDL 389
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 190 bits (483), Expect = 2e-48 Identities = 94/103 (91%), Positives = 100/103 (97%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL PHFR++MREVRTVVYSQFLESYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCK Sbjct: 285 YLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCK 344 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 239 IDKVAGVLETNRPDA+NA YQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 345 IDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 147 bits (370), Expect = 3e-35 Identities = 70/100 (70%), Positives = 86/100 (86%) Frame = -2 Query: 538 PHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDK 359 PH+RY++RE+R YSQ LESY+S+T+ MA AFGV VDFIDQELSRFIAAG+LHCKIDK Sbjct: 290 PHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDK 349 Query: 358 VAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 239 V ++ETNRPD++N YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 350 VNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 146 bits (368), Expect = 4e-35 Identities = 66/102 (64%), Positives = 90/102 (88%) Frame = -2 Query: 544 LQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKI 365 + PH+RY++RE+R + Y+Q LESY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+ Sbjct: 288 IHPHYRYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKV 347 Query: 364 DKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 239 D+V G++ETNRPD +N YQ+TIKQGD LLNRIQKLSRVI++ Sbjct: 348 DRVGGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 145 bits (366), Expect = 7e-35 Identities = 69/100 (69%), Positives = 86/100 (86%) Frame = -2 Query: 538 PHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDK 359 PH+RY++RE+R YSQ LESY+S+T+ MA AFGV V+FIDQELSRFIAAG+LHCKIDK Sbjct: 290 PHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDK 349 Query: 358 VAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 239 V ++ETNRPD++N YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 350 VNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 116 bits (291), Expect = 4e-26 Identities = 54/108 (50%), Positives = 81/108 (75%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 +L H+RY++RE+R Y+Q LESY+++++++MAA+FGV+VD+ID++L+ FI KL+C Sbjct: 302 FLVAHYRYYVREMRRRAYAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCV 361 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL*AFFV 224 ID+V GV+ TNRPD +N YQ +KQGD LLN++QK + AF V Sbjct: 362 IDRVNGVVFTNRPDEKNRQYQEVVKQGDVLLNKLQKYQATVMRGAFKV 409
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 115 bits (288), Expect = 8e-26 Identities = 56/102 (54%), Positives = 72/102 (70%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL PHF Y+ R +R Y QFL YK+V ++ MA FGV+ FID+EL R IA G+L C+ Sbjct: 308 YLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCR 367 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVID 242 ID V GV+E N D++N Y++ IK GD LLNRIQKL+RVI+ Sbjct: 368 IDAVNGVIEVNHRDSKNHLYKAVIKDGDILLNRIQKLARVIN 409
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 110 bits (274), Expect = 3e-24 Identities = 51/103 (49%), Positives = 76/103 (73%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL H +F+RE+R VY+Q LESYK++++++MA+AFGV+V F+D +L +FI +L+C Sbjct: 321 YLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCV 380 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVIDL 239 ID+V G++ETNRPD +NA Y +KQGD LL ++QK + L Sbjct: 381 IDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/87 (31%), Positives = 44/87 (50%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL PH R ++R Q+ Y S M MAAAF TV ++ EL++ I G ++ + Sbjct: 337 YLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINAR 396 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQG 287 ID + +L D R+ ++ ++ G Sbjct: 397 IDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 54.3 bits (129), Expect = 2e-07 Identities = 27/87 (31%), Positives = 44/87 (50%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL PH R ++R Q+ Y S M MAAAF TV ++ EL++ I G ++ + Sbjct: 337 YLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINAR 396 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQG 287 ID + +L D R+ ++ ++ G Sbjct: 397 IDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) (MFH protein) Length = 471 Score = 53.5 bits (127), Expect = 4e-07 Identities = 26/87 (29%), Positives = 43/87 (49%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL PH R ++R Q+ Y S M MAAAF TV ++ EL++ I G + + Sbjct: 337 YLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISAR 396 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQG 287 +D + +L D R+ ++ ++ G Sbjct: 397 VDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/87 (26%), Positives = 40/87 (45%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 Y+ PH ++R Q+ Y S M MA AF +V ++ E+ + I G++ + Sbjct: 386 YIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQAR 445 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQG 287 ID +L D RN+ ++ + G Sbjct: 446 IDSHNKILFAKEADQRNSTFERALIMG 472
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/88 (26%), Positives = 41/88 (46%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 +L H ++R Q+ + SV + MA AF +V +++EL I ++ + Sbjct: 326 HLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQAR 385 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGD 284 ID +L D RNA +Q ++ G+ Sbjct: 386 IDSHNKILYARHADQRNATFQKVLQMGN 413
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.5 bits (88), Expect = 0.013 Identities = 20/77 (25%), Positives = 39/77 (50%) Frame = -2 Query: 475 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 296 Y +TM+ MA ++VD + LS + + K+D++AGV+ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428 Query: 295 KQGDFLLNRIQKLSRVI 245 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.016 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -2 Query: 475 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 296 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 295 KQGDFLLNRIQKLSRVI 245 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.016 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -2 Query: 475 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 296 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 295 KQGDFLLNRIQKLSRVI 245 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/97 (22%), Positives = 47/97 (48%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 +++ H +R +RT V + + YK++ + +A A + ++ L I + + Sbjct: 343 FIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGR 402 Query: 367 IDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKL 257 ID+V VL+ ++ ++ + Y + K N+IQ L Sbjct: 403 IDQVNQVLQLDKINSSASRYNALEKWS----NQIQSL 435
>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (SGN1) Length = 422 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 YL P +R +L Y ++ +A F + +FI++ L I A KL+ K Sbjct: 295 YLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGK 354 Query: 367 IDKV 356 +D + Sbjct: 355 VDSL 358
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 370 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 245 K KVA V+ NRP A NA T+K+ D+++ I+ S V+ Sbjct: 10 KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50
>DUS2_BACSU (O31546) Probable tRNA-dihydrouridine synthase 2 (EC 1.-.-.-)| Length = 325 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/28 (39%), Positives = 21/28 (75%) Frame = -3 Query: 501 LSIRSSLSHTRV*QWRQWLPHLV*QLIS 418 +S+++ L +T V +WR+WL H++ Q I+ Sbjct: 140 VSVKTRLGYTDVDEWREWLTHILKQDIA 167
>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE| Length = 454 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = -2 Query: 427 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 287 +DF D+E+ F++ GK+ K+D+V LE R AR S +++G Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216
>SYC_STRMU (Q8DWA9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 447 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = -2 Query: 547 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 368 Y QP F V V+++FLE +++ E A G+TV F EL+++I +G Sbjct: 325 YEQP----FTATVDEAVFARFLEKFQAAMDEDFNTANGITVVF---ELAKWINSGHYDQT 377 Query: 367 I-DKVAGVLE 341 + DK A +L+ Sbjct: 378 VKDKFAEILQ 387
>HXK4_RAT (P17712) Glucokinase (EC 2.7.1.2) (Hexokinase-4) (Hexokinase type| IV) (HK IV) (HK4) (Hexokinase-D) Length = 465 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +3 Query: 258 SFCMRFSRKSPCLMVDW*KAFRASGRFVSRTPATLSILQ*SFPAAIKRDNSWSMKSTVTP 437 SF +R ++++W K F+ASG + L AIKR + M Sbjct: 151 SFPVRHEDLDKGILLNWTKGFKASGAEGNNIVGLLR-------DAIKRRGDFEMDVVAMV 203 Query: 438 NAAAIASIVTLLYDSRNCE 494 N +A++++ Y+ R CE Sbjct: 204 N-DTVATMISCYYEDRQCE 221
>HXK4_MOUSE (P52792) Glucokinase (EC 2.7.1.2) (Hexokinase-4) (Hexokinase type| IV) (HK IV) (HK4) (Hexokinase-D) Length = 465 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +3 Query: 258 SFCMRFSRKSPCLMVDW*KAFRASGRFVSRTPATLSILQ*SFPAAIKRDNSWSMKSTVTP 437 SF +R ++++W K F+ASG + L AIKR + M Sbjct: 151 SFPVRHEDIDKGILLNWTKGFKASGAEGNNIVGLLR-------DAIKRRGDFEMDVVAMV 203 Query: 438 NAAAIASIVTLLYDSRNCE 494 N +A++++ Y+ R CE Sbjct: 204 N-DTVATMISCYYEDRQCE 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,502,236 Number of Sequences: 219361 Number of extensions: 1632935 Number of successful extensions: 3998 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3996 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
