ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25a23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ139266.1| Triticum aestivum gamma tocopherol methyltransfer... 482 e-133
2gb|BT009496.1| Triticum aestivum clone wr1.pk0077.f1:fis, full i... 452 e-124
3ref|XM_467331.1| Oryza sativa (japonica cultivar-group), mRNA 139 8e-30
4ref|XM_506924.1| PREDICTED Oryza sativa (japonica cultivar-group... 139 8e-30
5gb|DQ456878.1| Oryza sativa gamma-tocopherol methyltransferase (... 139 8e-30
6dbj|AK071763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
7dbj|AK061746.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
8gb|DQ456879.1| Zea mays gamma-tocopherol methyltransferase (TMT)... 115 1e-22
9gb|AY109799.1| Zea mays CL364_1 mRNA sequence 107 3e-20
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
11dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
12gb|DQ456880.1| Gossypium hirsutum gamma-tocopherol methyltransfe... 66 1e-07
13gb|DQ456877.1| Solanum tuberosum gamma-tocopherol methyltransfer... 66 1e-07
14gb|DQ456876.1| Lycopersicon esculentum gamma-tocopherol methyltr... 66 1e-07
15gb|AF213481.1|AF213481 Perilla frutescens gamma-tocopherol methy... 66 1e-07
16gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725... 54 4e-04
17gb|DQ229834.1| Helianthus annuus cultivar RHA801 gamma-tocophero... 46 0.095
18gb|DQ229833.1| Helianthus annuus cultivar LG24 gamma-tocopherol ... 46 0.095
19ref|XM_472495.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
20emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.5
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22emb|BX571681.7| Zebrafish DNA sequence from clone DKEY-73N10 in ... 42 1.5
23dbj|AK070730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
24gb|AC133880.7| Mus musculus chromosome 15, clone RP24-142B13, co... 40 5.8
25gb|AC147091.2| Pan troglodytes BAC clone RP43-57O16 from 7, comp... 40 5.8
26gb|AC002124.2| Homo sapiens BAC clone CTB-180O1 from 7, complete... 40 5.8
27gb|AC124385.3| Mus musculus BAC clone RP24-421A2 from chromosome... 40 5.8
28gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome... 40 5.8
29gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, comp... 40 5.8
30emb|AL589685.17| Human DNA sequence from clone RP11-443G18 on ch... 40 5.8
31gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome... 40 5.8
32gb|AC095029.3| Homo sapiens chromosome 3 clone RP11-208J17, comp... 40 5.8
33gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, comp... 40 5.8
34gb|AC127285.4| Mus musculus BAC clone RP23-336P20 from chromosom... 40 5.8
35emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on ch... 40 5.8
36emb|AL773523.4| Mouse DNA sequence from clone RP23-186B18 on chr... 40 5.8
37emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chro... 40 5.8 
>gb|DQ139266.1| Triticum aestivum gamma tocopherol methyltransferase mRNA, complete
            cds
          Length = 1288

 Score =  482 bits (243), Expect = e-133
 Identities = 337/366 (92%), Gaps = 3/366 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   atgaatctgaagagaattttgctttagaaaccacttttcatatggcacttgcagttgcag 129
            |||||||||| |||||||||||||||| ||||| || ||||||||||||| |||||||||
Sbjct: 1267 atgaatctgaggagaattttgctttaggaacca-ttctcatatggcacttccagttgcag 1209

                                                                        
Query: 130  gtacataggcatggtaacacgaaaattttcagctacaaggcggcagcacgctgagtgtac 189
             |||| ||||| |||||||||||| | ||||||||||||||| ||||| || |||| || 
Sbjct: 1208 atacagaggcacggtaacacgaaattattcagctacaaggcgacagcaagccgagtctat 1149

                                                                        
Query: 190  ctcaatcacatgggttctattctacacta--ggcgatgcggtctcagcttctccttctgt 247
              ||||||||||||||||||||||||||   |||||||||| ||||| |||||||||| |
Sbjct: 1148 tccaatcacatgggttctattctacactctgggcgatgcggcctcaggttctccttctat 1089

                                                                        
Query: 248  gactgcttggggtttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagcc 307
            | |||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 1088 ggctgcttggggtttgtggcaggtgatgatgctgaacttaatgaggcctttcttgtagcc 1029

                                                                        
Query: 308  ttggatcatgagaggcatcaccagtgctccctttatcgtcttccatccactccttagtag 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ttggatcatgagaggcatcaccagtgctccctttatcgtcttccatccactccttagtag 969

                                                                        
Query: 368  agaagtgaggcctttccatgtcagtgctgattggatgacagcaggccaaaacggggccac 427
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 968  agaagtgaggcctttccatgtcagtgctgattggatgacagcaggccagaacggggccac 909

                  
Query: 428  gttttc 433
            ||||||
Sbjct: 908  gttttc 903
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>gb|BT009496.1| Triticum aestivum clone wr1.pk0077.f1:fis, full insert mRNA sequence
          Length = 1024

 Score =  452 bits (228), Expect = e-124
 Identities = 319/348 (91%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   ttttgctttagaaaccacttttcatatggcacttgcagttgcaggtacataggcatggta 145
            ||||||||||| ||||||||| | |||| ||||| ||||||||| || | ||||| ||||
Sbjct: 1004 ttttgctttaggaaccactttcc-tatgccacttccagttgcagatagagaggcacggta 946

                                                                        
Query: 146  acacgaaaattttcagctacaaggcggcagcacgctgagtgtacctcaatcacatgggtt 205
            |||| ||| | ||||||||| ||||| ||||| || |||| ||   ||||||||||||||
Sbjct: 945  acacaaaattattcagctacgaggcgacagcaagccgagtctattccaatcacatgggtt 886

                                                                        
Query: 206  ctattctacactaggcgatgcggtctcagcttctccttctgtgactgcttggggtttgcg 265
            |||||||||||| |||||||||| ||||| |||||||||| || ||||||||||||||||
Sbjct: 885  ctattctacactgggcgatgcggcctcaggttctccttctatggctgcttggggtttgcg 826

                                                                        
Query: 266  gcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgagaggcat 325
            ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 825  gcaggtgatgatgctgaacttaatgaggcctttcttgtagccttggatcatgagaggcat 766

                                                                        
Query: 326  caccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcctttcca 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  caccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcctttcca 706

                                                            
Query: 386  tgtcagtgctgattggatgacagcaggccaaaacggggccacgttttc 433
            |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 705  tgtcagtgctgattggatgacagcaggccagaacggggccacgttttc 658
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>ref|XM_467331.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1301

 Score =  139 bits (70), Expect = 8e-30
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 1090 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 1031

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            |||||||||| ||| ||  ||||||||||||| ||||| ||||| |||||||| |  |||
Sbjct: 1030 ggcatcaccattgcacctcttatcgtcttccacccacttcttagcagagaagttaaacct 971

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||||| ||||||||  || || |||||||| || ||||| |||||
Sbjct: 970  ttccatgtcaatgctgattttataaccgcaggccagaatggggcgacgtt 921
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>ref|XM_506924.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1111_E07.25 mRNA
          Length = 1432

 Score =  139 bits (70), Expect = 8e-30
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 1091 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 1032

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            |||||||||| ||| ||  ||||||||||||| ||||| ||||| |||||||| |  |||
Sbjct: 1031 ggcatcaccattgcacctcttatcgtcttccacccacttcttagcagagaagttaaacct 972

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||||| ||||||||  || || |||||||| || ||||| |||||
Sbjct: 971  ttccatgtcaatgctgattttataaccgcaggccagaatggggcgacgtt 922
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>gb|DQ456878.1| Oryza sativa gamma-tocopherol methyltransferase (TMT) mRNA, complete
            cds
          Length = 1432

 Score =  139 bits (70), Expect = 8e-30
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 1091 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 1032

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            |||||||||| ||| ||  ||||||||||||| ||||| ||||| |||||||| |  |||
Sbjct: 1031 ggcatcaccattgcacctcttatcgtcttccacccacttcttagcagagaagttaaacct 972

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||||| ||||||||  || || |||||||| || ||||| |||||
Sbjct: 971  ttccatgtcaatgctgattttataaccgcaggccagaatggggcgacgtt 922
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>dbj|AK071763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110C23, full
            insert sequence
          Length = 1432

 Score =  139 bits (70), Expect = 8e-30
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 1091 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 1032

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            |||||||||| ||| ||  ||||||||||||| ||||| ||||| |||||||| |  |||
Sbjct: 1031 ggcatcaccattgcacctcttatcgtcttccacccacttcttagcagagaagttaaacct 972

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||||| ||||||||  || || |||||||| || ||||| |||||
Sbjct: 971  ttccatgtcaatgctgattttataaccgcaggccagaatggggcgacgtt 922
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>dbj|AK061746.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F12, full
            insert sequence
          Length = 1301

 Score =  139 bits (70), Expect = 8e-30
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 1090 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 1031

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            |||||||||| ||| ||  ||||||||||||| ||||| ||||| |||||||| |  |||
Sbjct: 1030 ggcatcaccattgcacctcttatcgtcttccacccacttcttagcagagaagttaaacct 971

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||||| ||||||||  || || |||||||| || ||||| |||||
Sbjct: 970  ttccatgtcaatgctgattttataaccgcaggccagaatggggcgacgtt 921
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>gb|DQ456879.1| Zea mays gamma-tocopherol methyltransferase (TMT) mRNA, complete cds
          Length = 1310

 Score =  115 bits (58), Expect = 1e-22
 Identities = 142/170 (83%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || 
Sbjct: 1112 ttgcgacaggtgatgatggtgaatttgatgaggcccttcttgtagccctggatcattagc 1053

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            ||||||||||  || ||  | ||||||||||||||  || | || ||||| |||| ||| 
Sbjct: 1052 ggcatcaccatcgcgcctctgatcgtcttccatccggtcgtcagcagagaggtgaagccc 993

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||| || |||||||  || || || ||||||||||||||||||||
Sbjct: 992  ttccatgttagcgctgattttatcacggcgggccaaaacggggccacgtt 943
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>gb|AY109799.1| Zea mays CL364_1 mRNA sequence
          Length = 1304

 Score =  107 bits (54), Expect = 3e-20
 Identities = 141/170 (82%)
 Strand = Plus / Minus

                                                                        
Query: 261  ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
            ||||| ||||||||||||||||| ||||| || || ||||||||||| |||||||| || 
Sbjct: 1094 ttgcgacaggtgatgatggtgaatttgatgagccccttcttgtagccctggatcattagc 1035

                                                                        
Query: 321  ggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgaggcct 380
            ||||||||||  || ||  | ||||||||||||||  || | || ||||| |||| ||| 
Sbjct: 1034 ggcatcaccatcgcgcctctgatcgtcttccatccggtcgtcagcagagaggtgaagccc 975

                                                              
Query: 381  ttccatgtcagtgctgattggatgacagcaggccaaaacggggccacgtt 430
            |||||||| || |||||||  || || || ||||||||||||||||||||
Sbjct: 974  ttccatgttagcgctgattttatcacggcgggccaaaacggggccacgtt 925
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                            
Query: 261      ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
                ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 28915700 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 28915641

                                                
Query: 321      ggcatcaccagtgctccctttatcgtcttcca 352
                |||||||||| ||| ||  |||||||||||||
Sbjct: 28915640 ggcatcaccattgcacctcttatcgtcttcca 28915609



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 354      ccactccttagtagagaagtgaggcctttccatgtcagtgctgattggatgacagcaggc 413
                ||||| ||||| |||||||| |  ||||||||||||| ||||||||  || || ||||||
Sbjct: 28915507 ccacttcttagcagagaagttaaacctttccatgtcaatgctgattttataaccgcaggc 28915448

                                 
Query: 414      caaaacggggccacgtt 430
                || || ||||| |||||
Sbjct: 28915447 cagaatggggcgacgtt 28915431
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>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1111_E07
          Length = 123613

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                          
Query: 261    ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgaga 320
              ||||| ||||||||||||||||| ||||| || ||||||||||| |||| |||||| |||
Sbjct: 108392 ttgcgacaggtgatgatggtgaatttgatgagccctttcttgtatccttcgatcatcaga 108333

                                              
Query: 321    ggcatcaccagtgctccctttatcgtcttcca 352
              |||||||||| ||| ||  |||||||||||||
Sbjct: 108332 ggcatcaccattgcacctcttatcgtcttcca 108301



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                          
Query: 354    ccactccttagtagagaagtgaggcctttccatgtcagtgctgattggatgacagcaggc 413
              ||||| ||||| |||||||| |  ||||||||||||| ||||||||  || || ||||||
Sbjct: 108199 ccacttcttagcagagaagttaaacctttccatgtcaatgctgattttataaccgcaggc 108140

                               
Query: 414    caaaacggggccacgtt 430
              || || ||||| |||||
Sbjct: 108139 cagaatggggcgacgtt 108123
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>gb|DQ456880.1| Gossypium hirsutum gamma-tocopherol methyltransferase (TMT) mRNA,
            complete cds
          Length = 1384

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 114/141 (80%)
 Strand = Plus / Minus

                                                                        
Query: 257  gggtttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcat 316
            |||||| ||||| |||||||| | |||||| ||||  ||||||| ||| |||||||||||
Sbjct: 1154 gggtttccggcatgtgatgatagcgaactttatcacccctttctggtacccttggatcat 1095

                                                                        
Query: 317  gagaggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgag 376
             |  |||||||| ||||| || ||||| || ||  ||||||| | ||| || || |||| 
Sbjct: 1094 caatggcatcactagtgcaccttttattgtttttaatccacttcgtagcagtgatgtgaa 1035

                                 
Query: 377  gcctttccatgtcagtgctga 397
            ||| |||||||||| ||||||
Sbjct: 1034 gcccttccatgtcaatgctga 1014
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>gb|DQ456877.1| Solanum tuberosum gamma-tocopherol methyltransferase (TMT) mRNA,
            complete cds
          Length = 1396

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                        
Query: 270  gtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgagaggcatcacc 329
            ||||||||||  || ||||| || ||||||||||| ||||  ||||| || |||||  ||
Sbjct: 1191 gtgatgatggcaaatttgatgagacctttcttgtatccttcaatcatcagtggcattgcc 1132

                                                                        
Query: 330  agtgctccctttatcgtcttccatccactccttagtagagaagtgaggcctttccatgtc 389
            |||||  | || || |||||||||||||| | |||||  || |||| ||| |||||||||
Sbjct: 1131 agtgcagctttgattgtcttccatccactgcgtagtactgatgtgaagcccttccatgtc 1072

                                         
Query: 390  agtgctgattggatgacagcaggccaaaa 418
            |||||||| |  ||||| || ||||||||
Sbjct: 1071 agtgctgactttatgactgctggccaaaa 1043
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>gb|DQ456876.1| Lycopersicon esculentum gamma-tocopherol methyltransferase (TMT)
            mRNA, complete cds
          Length = 1354

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                        
Query: 270  gtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatgagaggcatcacc 329
            ||||||||||  || ||||| || ||||||||||| ||||  ||||| || |||||  ||
Sbjct: 1087 gtgatgatggcaaatttgatgagacctttcttgtatccttcaatcatcagtggcattgcc 1028

                                                                        
Query: 330  agtgctccctttatcgtcttccatccactccttagtagagaagtgaggcctttccatgtc 389
            |||||  | || || |||||||||||||| | |||||  || |||| ||| |||||||||
Sbjct: 1027 agtgcagctttgattgtcttccatccactgcgtagtactgatgtgaagcccttccatgtc 968

                                         
Query: 390  agtgctgattggatgacagcaggccaaaa 418
            |||||||| |  ||||| || ||||||||
Sbjct: 967  agtgctgactttatgactgctggccaaaa 939
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>gb|AF213481.1|AF213481 Perilla frutescens gamma-tocopherol methyltransferase (TMT) mRNA,
            complete cds
          Length = 1369

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 108/133 (81%)
 Strand = Plus / Minus

                                                                        
Query: 258  ggtttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatcatg 317
            ||||| ||||| || |||||||  || ||||||| ||| ||||| || |||| |||||| 
Sbjct: 1188 ggttttcggcatgtaatgatggcaaatttgatcacgcccttcttatatccttcgatcatc 1129

                                                                        
Query: 318  agaggcatcaccagtgctccctttatcgtcttccatccactccttagtagagaagtgagg 377
            |  |||||||||| ||||||  |||| ||||||||||| |||||||| || || || | |
Sbjct: 1128 aatggcatcaccattgctcctcttatagtcttccatccgctccttagcagtgaggttatg 1069

                         
Query: 378  cctttccatgtca 390
            || ||||||||||
Sbjct: 1068 cccttccatgtca 1056
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>gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725 orthologous region
          Length = 108553

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 261   ttgcggcaggtgatgatggtgaacttgatcaggcctttcttgtagccttggatca 315
             ||||||||||||||||  ||||| ||||| || || ||| |||||||||||||||
Sbjct: 92837 ttgcggcaggtgatgactgtgaatttgatgagccccttcctgtagccttggatca 92891
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>gb|DQ229834.1| Helianthus annuus cultivar RHA801 gamma-tocopherol methyltransferase
            (gamma-TMT) gene, complete cds
          Length = 4304

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 405  acagcaggccaaaacggggccac 427
            |||||||||||||||||||||||
Sbjct: 3029 acagcaggccaaaacggggccac 3007
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>gb|DQ229833.1| Helianthus annuus cultivar LG24 gamma-tocopherol methyltransferase
            (gamma-TMT) gene, complete sequence
          Length = 4304

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 405  acagcaggccaaaacggggccac 427
            |||||||||||||||||||||||
Sbjct: 3029 acagcaggccaaaacggggccac 3007
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>ref|XM_472495.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1617

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 110 tatggcacttgcagttgcagg 130
           |||||||||||||||||||||
Sbjct: 928 tatggcacttgcagttgcagg 948
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>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
             complete sequence
          Length = 163738

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   tatggcacttgcagttgcagg 130
             |||||||||||||||||||||
Sbjct: 88777 tatggcacttgcagttgcagg 88797
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 110      tatggcacttgcagttgcagg 130
                |||||||||||||||||||||
Sbjct: 21275303 tatggcacttgcagttgcagg 21275323
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>emb|BX571681.7| Zebrafish DNA sequence from clone DKEY-73N10 in linkage group 18,
             complete sequence
          Length = 184543

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   agtgaggcctttccatgtcag 391
             |||||||||||||||||||||
Sbjct: 84141 agtgaggcctttccatgtcag 84121
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>dbj|AK070730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063K10, full
            insert sequence
          Length = 2705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 110  tatggcacttgcagttgcagg 130
            |||||||||||||||||||||
Sbjct: 1733 tatggcacttgcagttgcagg 1753
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>gb|AC133880.7| Mus musculus chromosome 15, clone RP24-142B13, complete sequence
          Length = 135091

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  catgtcagtgctgattggat 403
            ||||||||||||||||||||
Sbjct: 7279 catgtcagtgctgattggat 7298
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>gb|AC147091.2| Pan troglodytes BAC clone RP43-57O16 from 7, complete sequence
          Length = 170233

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    gtctcagcttctccttctgt 247
              ||||||||||||||||||||
Sbjct: 134081 gtctcagcttctccttctgt 134062
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>gb|AC002124.2| Homo sapiens BAC clone CTB-180O1 from 7, complete sequence
          Length = 100923

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   gtctcagcttctccttctgt 247
             ||||||||||||||||||||
Sbjct: 47328 gtctcagcttctccttctgt 47347
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>gb|AC124385.3| Mus musculus BAC clone RP24-421A2 from chromosome 1, complete sequence
          Length = 163778

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    cgatggatgtaaccaaaaga 62
             ||||||||||||||||||||
Sbjct: 46105 cgatggatgtaaccaaaaga 46086
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>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence
          Length = 158354

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     cgatggatgtaaccaaaaga 62
              ||||||||||||||||||||
Sbjct: 140566 cgatggatgtaaccaaaaga 140547
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>gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, complete sequence
          Length = 188373

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gtctcagcttctccttctgt 247
           ||||||||||||||||||||
Sbjct: 877 gtctcagcttctccttctgt 896
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>emb|AL589685.17| Human DNA sequence from clone RP11-443G18 on chromosome 1 Contains the
             5' end of the gene for Est1p-like protein B (EST1B), novel
             gene (MGC13102), novel gene (MGC31963), a von
             Hippel-Lindau syndrome (VHL) pseudogene, the CCT3 gene for
             chaperonin containing TCP1 subunit 3 (gamma), the gene for
             SSTK-interacting protein (SSTK-IP) and the 5' end of the
             RHBG gene for Rhesus blood group B glycoprotein, complete
             sequence
          Length = 107819

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctcagcttctccttctgtga 249
             ||||||||||||||||||||
Sbjct: 96268 ctcagcttctccttctgtga 96249
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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gcaggtgatgatggtgaact 285
             ||||||||||||||||||||
Sbjct: 38820 gcaggtgatgatggtgaact 38839
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>gb|AC095029.3| Homo sapiens chromosome 3 clone RP11-208J17, complete sequence
          Length = 151787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    tggatgacagcaggccaaaa 418
              ||||||||||||||||||||
Sbjct: 135784 tggatgacagcaggccaaaa 135803
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>gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, complete sequence
          Length = 170282

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    tggatgacagcaggccaaaa 418
              ||||||||||||||||||||
Sbjct: 124274 tggatgacagcaggccaaaa 124255
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>gb|AC127285.4| Mus musculus BAC clone RP23-336P20 from chromosome 8, complete sequence
          Length = 232127

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    gctttagaaaccacttttcatatg 113
             ||||||||||||||| ||||||||
Sbjct: 61122 gctttagaaaccactcttcatatg 61145
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>emb|CT010428.13| Mouse DNA sequence from clone RP23-304G18 on chromosome 13, complete
             sequence
          Length = 226457

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   gcaggtgatgatggtgaact 285
             ||||||||||||||||||||
Sbjct: 16247 gcaggtgatgatggtgaact 16228
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>emb|AL773523.4| Mouse DNA sequence from clone RP23-186B18 on chromosome 2, complete
             sequence
          Length = 198403

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    aatctgaagagaattttgct 92
             ||||||||||||||||||||
Sbjct: 29732 aatctgaagagaattttgct 29713
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>emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chromosome 15, complete
              sequence
          Length = 208835

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    catgtcagtgctgattggat 403
              ||||||||||||||||||||
Sbjct: 188572 catgtcagtgctgattggat 188591


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,177,289
Number of Sequences: 3902068
Number of extensions: 4177289
Number of successful extensions: 82912
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82798
Number of HSP's gapped (non-prelim): 109
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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