ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags24l23 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RS9_TOBAC (P49214) 40S ribosomal protein S9 (S4) (Fragment) | 50 | 1e-06 | 2 | RS9_DROME (P55935) 40S ribosomal protein S9 | 48 | 7e-06 | 3 | RS9_RAT (P29314) 40S ribosomal protein S9 | 47 | 1e-05 | 4 | RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9 | 47 | 1e-05 | 5 | RS9_HUMAN (P46781) 40S ribosomal protein S9 | 47 | 1e-05 | 6 | RS9_PODAN (P52810) 40S ribosomal protein S9 (S7) | 45 | 5e-05 | 7 | RS9_CAEEL (Q20228) 40S ribosomal protein S9 | 42 | 4e-04 | 8 | RS9B_SCHPO (O59675) 40S ribosomal protein S9-B | 39 | 0.003 | 9 | RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A | 39 | 0.003 | 10 | RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP2... | 37 | 0.010 | 11 | RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP2... | 37 | 0.010 | 12 | RS9_TRYBB (P17959) Probable 40S ribosomal protein S9 | 30 | 1.6 | 13 | DOCK1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa... | 28 | 7.8 |
|---|
>RS9_TOBAC (P49214) 40S ribosomal protein S9 (S4) (Fragment)| Length = 77 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/28 (82%), Positives = 24/28 (85%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKKAS 212 KHIDFSL SPFGGG GRVKRKNQK A+ Sbjct: 36 KHIDFSLISPFGGGRPGRVKRKNQKAAA 63
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/26 (84%), Positives = 22/26 (84%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKK 218 KHIDFSL SPFGGG GRVKRKN KK Sbjct: 156 KHIDFSLKSPFGGGRPGRVKRKNLKK 181
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/26 (80%), Positives = 22/26 (84%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKK 218 KHIDFSL SP+GGG GRVKRKN KK Sbjct: 154 KHIDFSLRSPYGGGRPGRVKRKNAKK 179
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/26 (80%), Positives = 22/26 (84%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKK 218 KHIDFSL SP+GGG GRVKRKN KK Sbjct: 154 KHIDFSLRSPYGGGRPGRVKRKNAKK 179
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/26 (80%), Positives = 22/26 (84%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKK 218 KHIDFSL SP+GGG GRVKRKN KK Sbjct: 154 KHIDFSLRSPYGGGRPGRVKRKNAKK 179
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKKA 215 KHIDF+LTSPFGGG GRV+RK K A Sbjct: 152 KHIDFALTSPFGGGRPGRVRRKKAKAA 178
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKNQKK 218 KHIDFSL SP+GGG GRVKR+ +K Sbjct: 154 KHIDFSLQSPYGGGRPGRVKRRTLRK 179
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/22 (72%), Positives = 19/22 (86%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRK 230 KHIDF+L+SP+GGG GR KRK Sbjct: 153 KHIDFALSSPYGGGRPGRCKRK 174
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 38.9 bits (89), Expect = 0.003 Identities = 16/22 (72%), Positives = 19/22 (86%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRK 230 KHIDF+L+SP+GGG GR KRK Sbjct: 153 KHIDFALSSPYGGGRPGRCKRK 174
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKN 227 KHIDF+ TSPFGG GRV R+N Sbjct: 153 KHIDFAPTSPFGGARPGRVARRN 175
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = -2 Query: 295 KHIDFSLTSPFGGGPAGRVKRKN 227 KHIDF+ TSPFGG GRV R+N Sbjct: 153 KHIDFAPTSPFGGARPGRVARRN 175
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -2 Query: 292 HIDFSLTSPFGGGPAGRVKRKNQKKA 215 HI F+ SPFG G GRVKR + A Sbjct: 154 HIAFADASPFGNGRPGRVKRVKRNAA 179
>DOCK1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa protein| downstream of CRK) (DOCK180) (Fragments) Length = 1027 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = +3 Query: 21 IAPNITKCMHANNRDNATKRQEDNP*KSQASQLKHSQHQHLIN 149 + P + K MH+ ++D K D K + + ++S+HQ + + Sbjct: 831 LEPLLPKKMHSRSQDKLDKDDPDKEKKDKKKEKRNSKHQEIFD 873 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,837,647 Number of Sequences: 219361 Number of extensions: 403490 Number of successful extensions: 936 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 936 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
