ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AROB_CORPS (P96749) 3-dehydroquinate synthase (EC 4.2.3.4) 30 2.4
2YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1 29 3.1
3SYD_MESFL (Q6F1A0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 28 5.3
4TBB_EUPFO (Q9N2N6) Tubulin beta chain (Beta-tubulin) 28 9.0

>AROB_CORPS (P96749) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 358

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 39  SCWLAGIAHVHMPSQTLSPTTPTMGNLT 122
           +CW+ GIA +H+P+  LS     +G  T
Sbjct: 114 ACWMRGIAVIHVPTTLLSMVDAAVGGKT 141



to top

>YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1|
          Length = 2434

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = -1

Query: 131  YAMREISHCGS-------GWGQSLRRHVHMCNSCKPTAASPTFGIGPR 9
            YA+R + H          G  +  RR  ++C + +  A SP F +GPR
Sbjct: 965  YAIRFLGHMSDFRRGLIKGSARQDRRKAYVCRTTQVNARSPLFALGPR 1012



to top

>SYD_MESFL (Q6F1A0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 577

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 117 DFPLWEWLGTESETACAHVQFLQAN 43
           DFPL+EW   ES    AH  F   N
Sbjct: 423 DFPLYEWSDEESRYVAAHNPFTMPN 447



to top

>TBB_EUPFO (Q9N2N6) Tubulin beta chain (Beta-tubulin)|
          Length = 444

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 81  QTLSPTTPTMGNLTHCV 131
           +TL PTTPT G+L H V
Sbjct: 213 RTLKPTTPTYGDLNHLV 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,160,964
Number of Sequences: 219361
Number of extensions: 357007
Number of successful extensions: 1527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top