| Clone Name | rbags24l22 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | AROB_CORPS (P96749) 3-dehydroquinate synthase (EC 4.2.3.4) | 30 | 2.4 | 2 | YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1 | 29 | 3.1 | 3 | SYD_MESFL (Q6F1A0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 28 | 5.3 | 4 | TBB_EUPFO (Q9N2N6) Tubulin beta chain (Beta-tubulin) | 28 | 9.0 |
|---|
>AROB_CORPS (P96749) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 358 Score = 29.6 bits (65), Expect = 2.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 39 SCWLAGIAHVHMPSQTLSPTTPTMGNLT 122 +CW+ GIA +H+P+ LS +G T Sbjct: 114 ACWMRGIAVIHVPTTLLSMVDAAVGGKT 141
>YCF1_OENHO (Q9MTH5) Hypothetical 287.9 kDa protein ycf1| Length = 2434 Score = 29.3 bits (64), Expect = 3.1 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = -1 Query: 131 YAMREISHCGS-------GWGQSLRRHVHMCNSCKPTAASPTFGIGPR 9 YA+R + H G + RR ++C + + A SP F +GPR Sbjct: 965 YAIRFLGHMSDFRRGLIKGSARQDRRKAYVCRTTQVNARSPLFALGPR 1012
>SYD_MESFL (Q6F1A0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 577 Score = 28.5 bits (62), Expect = 5.3 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -3 Query: 117 DFPLWEWLGTESETACAHVQFLQAN 43 DFPL+EW ES AH F N Sbjct: 423 DFPLYEWSDEESRYVAAHNPFTMPN 447
>TBB_EUPFO (Q9N2N6) Tubulin beta chain (Beta-tubulin)| Length = 444 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 81 QTLSPTTPTMGNLTHCV 131 +TL PTTPT G+L H V Sbjct: 213 RTLKPTTPTYGDLNHLV 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,160,964 Number of Sequences: 219361 Number of extensions: 357007 Number of successful extensions: 1527 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1527 length of database: 80,573,946 effective HSP length: 28 effective length of database: 74,431,838 effective search space used: 1786364112 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)