ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in... 42 0.49
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.49
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.49
4emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.49
5gb|AC164398.8| Mus musculus chromosome 7, clone RP23-307M24, com... 38 7.6
6ref|XM_754304.1| Ustilago maydis 521 hypothetical protein (UM032... 38 7.6
7gb|AC133101.4| Mus musculus BAC clone RP23-154M23 from chromosom... 38 7.6
8gb|AC153588.11| Mus musculus 6 BAC RP23-430H2 (Roswell Park Canc... 38 7.6
9emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chr... 38 7.6
10emb|AL161907.17| Human DNA sequence from clone RP1-166H4 on chro... 38 7.6
11ref|XM_966948.1| PREDICTED: Tribolium castaneum similar to rTS b... 38 7.6
12ref|XM_965426.1| PREDICTED: Tribolium castaneum similar to CG180... 38 7.6
13emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10,... 38 7.6
14emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, ... 38 7.6
15gb|AC083923.5| Homo sapiens chromosome 8, clone RP11-89K10, comp... 38 7.6
16dbj|AK148490.1| Mus musculus adult pancreas islet cells cDNA, RI... 38 7.6
17dbj|AK020344.1| Mus musculus adult male epididymis cDNA, RIKEN f... 38 7.6
18gb|AC021396.6|AC021396 Homo sapiens, clone RP11-28I2, complete s... 38 7.6
19gb|AC107739.9| Mus musculus chromosome 7, clone RP23-345M1, comp... 38 7.6
20gb|AF130571.1|AF130571 Felis catus clone Fca220 microsatellite s... 38 7.6
21dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.6
22gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, compl... 38 7.6
23gb|AC157811.3| Mus musculus chromosome 1, clone RP24-377C24, com... 38 7.6
24gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, com... 38 7.6
25emb|AL844190.5| Mouse DNA sequence from clone RP23-425H15 on chr... 38 7.6
26emb|AL645731.8| Mouse DNA sequence from clone RP23-423G13 on chr... 38 7.6

>emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in linkage group 10,
              complete sequence
          Length = 269153

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     ggaattgcacatgtgcacatg 74
              |||||||||||||||||||||
Sbjct: 257430 ggaattgcacatgtgcacatg 257450



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 86       tctgtccccaaccactcccac 106
                |||||||||||||||||||||
Sbjct: 23311967 tctgtccccaaccactcccac 23311987



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 86       tctgtccccaaccactcccac 106
                |||||||||||||||||||||
Sbjct: 23240158 tctgtccccaaccactcccac 23240178



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>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 168063

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     tctgtccccaaccactcccac 106
              |||||||||||||||||||||
Sbjct: 125085 tctgtccccaaccactcccac 125105



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>gb|AC164398.8| Mus musculus chromosome 7, clone RP23-307M24, complete sequence
          Length = 196756

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 58    ttgcacatgtgcacatgcc 76
             |||||||||||||||||||
Sbjct: 63538 ttgcacatgtgcacatgcc 63556



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>ref|XM_754304.1| Ustilago maydis 521 hypothetical protein (UM03250.1) partial mRNA
          Length = 4608

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   ggcgacgcagctgttggct 49
            |||||||||||||||||||
Sbjct: 3663 ggcgacgcagctgttggct 3681



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>gb|AC133101.4| Mus musculus BAC clone RP23-154M23 from chromosome 15, complete sequence
          Length = 206189

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 95     aaccactcccacaatgggaaatc 117
              ||||| |||||||||||||||||
Sbjct: 166299 aaccaatcccacaatgggaaatc 166321



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>gb|AC153588.11| Mus musculus 6 BAC RP23-430H2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188672

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    gcacatgccgtctcagact 86
             |||||||||||||||||||
Sbjct: 53241 gcacatgccgtctcagact 53259



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>emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 84016

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    tctgtccccaaccactccc 104
             |||||||||||||||||||
Sbjct: 18245 tctgtccccaaccactccc 18227



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>emb|AL161907.17| Human DNA sequence from clone RP1-166H4 on chromosome 6 Contains the 3'
              end of the RUNX2 gene for runt-related transcription factor
              2, complete sequence
          Length = 152395

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     tcagactctgtccccaacc 98
              |||||||||||||||||||
Sbjct: 100276 tcagactctgtccccaacc 100258



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>ref|XM_966948.1| PREDICTED: Tribolium castaneum similar to rTS beta protein
           (LOC660741), mRNA
          Length = 1369

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 43  gttggcttgcaggaattgc 61
           |||||||||||||||||||
Sbjct: 976 gttggcttgcaggaattgc 958



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>ref|XM_965426.1| PREDICTED: Tribolium castaneum similar to CG18003-PB, isoform B
           (LOC659094), mRNA
          Length = 1131

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 83  gactctgtccccaaccactcccacaat 109
           |||||||||||||||| ||| ||||||
Sbjct: 879 gactctgtccccaaccgctcgcacaat 853



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>emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10, complete sequence
          Length = 116906

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    gcagctgttggcttgcagg 55
             |||||||||||||||||||
Sbjct: 73916 gcagctgttggcttgcagg 73934



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>emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, complete sequence
          Length = 132605

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    gcagctgttggcttgcagg 55
             |||||||||||||||||||
Sbjct: 21368 gcagctgttggcttgcagg 21350



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>gb|AC083923.5| Homo sapiens chromosome 8, clone RP11-89K10, complete sequence
          Length = 162810

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    gcagctgttggcttgcagg 55
             |||||||||||||||||||
Sbjct: 52292 gcagctgttggcttgcagg 52310



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>dbj|AK148490.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
           enriched library, clone:C820009N20 product:hypothetical
           protein, full insert sequence
          Length = 1352

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  gcagctgttggcttgcagg 55
           |||||||||||||||||||
Sbjct: 173 gcagctgttggcttgcagg 191



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>dbj|AK020344.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230113C19 product:unclassifiable, full
           insert sequence
          Length = 801

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 58  ttgcacatgtgcacatgcc 76
           |||||||||||||||||||
Sbjct: 384 ttgcacatgtgcacatgcc 366



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>gb|AC021396.6|AC021396 Homo sapiens, clone RP11-28I2, complete sequence
          Length = 200673

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     gcagctgttggcttgcagg 55
              |||||||||||||||||||
Sbjct: 183512 gcagctgttggcttgcagg 183494



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>gb|AC107739.9| Mus musculus chromosome 7, clone RP23-345M1, complete sequence
          Length = 205227

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 58     ttgcacatgtgcacatgcc 76
              |||||||||||||||||||
Sbjct: 173097 ttgcacatgtgcacatgcc 173115



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>gb|AF130571.1|AF130571 Felis catus clone Fca220 microsatellite sequence
          Length = 343

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  cagactctgtccccaacca 99
           |||||||||||||||||||
Sbjct: 204 cagactctgtccccaacca 222



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>dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete
             sequence
          Length = 177483

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    ctctgtccccaaccactcc 103
             |||||||||||||||||||
Sbjct: 84425 ctctgtccccaaccactcc 84407



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>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence
          Length = 200656

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 95     aaccactcccacaatgggaaatc 117
              ||||| |||||||||||||||||
Sbjct: 168086 aaccaatcccacaatgggaaatc 168064



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>gb|AC157811.3| Mus musculus chromosome 1, clone RP24-377C24, complete sequence
          Length = 188752

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     aattgcacatgtgcacatg 74
              |||||||||||||||||||
Sbjct: 186000 aattgcacatgtgcacatg 185982



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>gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, complete sequence
          Length = 230474

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     aattgcacatgtgcacatg 74
              |||||||||||||||||||
Sbjct: 149073 aattgcacatgtgcacatg 149091



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>emb|AL844190.5| Mouse DNA sequence from clone RP23-425H15 on chromosome 4, complete
             sequence
          Length = 211151

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    tctgtccccaaccactccc 104
             |||||||||||||||||||
Sbjct: 51660 tctgtccccaaccactccc 51642



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>emb|AL645731.8| Mouse DNA sequence from clone RP23-423G13 on chromosome 4, complete
             sequence
          Length = 148213

 Score = 38.2 bits (19), Expect = 7.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    gcagctgttggcttgcagg 55
             |||||||||||||||||||
Sbjct: 93169 gcagctgttggcttgcagg 93151


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 900,156
Number of Sequences: 3902068
Number of extensions: 900156
Number of successful extensions: 67054
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66975
Number of HSP's gapped (non-prelim): 79
length of query: 158
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 136
effective length of database: 17,147,199,772
effective search space: 2332019168992
effective search space used: 2332019168992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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