| Clone Name | rbags24l22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in linkage group 10, complete sequence Length = 269153 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ggaattgcacatgtgcacatg 74 ||||||||||||||||||||| Sbjct: 257430 ggaattgcacatgtgcacatg 257450
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tctgtccccaaccactcccac 106 ||||||||||||||||||||| Sbjct: 23311967 tctgtccccaaccactcccac 23311987
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tctgtccccaaccactcccac 106 ||||||||||||||||||||| Sbjct: 23240158 tctgtccccaaccactcccac 23240178
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tctgtccccaaccactcccac 106 ||||||||||||||||||||| Sbjct: 125085 tctgtccccaaccactcccac 125105
>gb|AC164398.8| Mus musculus chromosome 7, clone RP23-307M24, complete sequence Length = 196756 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 ttgcacatgtgcacatgcc 76 ||||||||||||||||||| Sbjct: 63538 ttgcacatgtgcacatgcc 63556
>ref|XM_754304.1| Ustilago maydis 521 hypothetical protein (UM03250.1) partial mRNA Length = 4608 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ggcgacgcagctgttggct 49 ||||||||||||||||||| Sbjct: 3663 ggcgacgcagctgttggct 3681
>gb|AC133101.4| Mus musculus BAC clone RP23-154M23 from chromosome 15, complete sequence Length = 206189 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 aaccactcccacaatgggaaatc 117 ||||| ||||||||||||||||| Sbjct: 166299 aaccaatcccacaatgggaaatc 166321
>gb|AC153588.11| Mus musculus 6 BAC RP23-430H2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188672 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 gcacatgccgtctcagact 86 ||||||||||||||||||| Sbjct: 53241 gcacatgccgtctcagact 53259
>emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chromosome 6 Contains part of a novel gene, complete sequence Length = 84016 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 tctgtccccaaccactccc 104 ||||||||||||||||||| Sbjct: 18245 tctgtccccaaccactccc 18227
>emb|AL161907.17| Human DNA sequence from clone RP1-166H4 on chromosome 6 Contains the 3' end of the RUNX2 gene for runt-related transcription factor 2, complete sequence Length = 152395 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 tcagactctgtccccaacc 98 ||||||||||||||||||| Sbjct: 100276 tcagactctgtccccaacc 100258
>ref|XM_966948.1| PREDICTED: Tribolium castaneum similar to rTS beta protein (LOC660741), mRNA Length = 1369 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 gttggcttgcaggaattgc 61 ||||||||||||||||||| Sbjct: 976 gttggcttgcaggaattgc 958
>ref|XM_965426.1| PREDICTED: Tribolium castaneum similar to CG18003-PB, isoform B (LOC659094), mRNA Length = 1131 Score = 38.2 bits (19), Expect = 7.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gactctgtccccaaccactcccacaat 109 |||||||||||||||| ||| |||||| Sbjct: 879 gactctgtccccaaccgctcgcacaat 853
>emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10, complete sequence Length = 116906 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 gcagctgttggcttgcagg 55 ||||||||||||||||||| Sbjct: 73916 gcagctgttggcttgcagg 73934
>emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, complete sequence Length = 132605 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 gcagctgttggcttgcagg 55 ||||||||||||||||||| Sbjct: 21368 gcagctgttggcttgcagg 21350
>gb|AC083923.5| Homo sapiens chromosome 8, clone RP11-89K10, complete sequence Length = 162810 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 gcagctgttggcttgcagg 55 ||||||||||||||||||| Sbjct: 52292 gcagctgttggcttgcagg 52310
>dbj|AK148490.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820009N20 product:hypothetical protein, full insert sequence Length = 1352 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 gcagctgttggcttgcagg 55 ||||||||||||||||||| Sbjct: 173 gcagctgttggcttgcagg 191
>dbj|AK020344.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230113C19 product:unclassifiable, full insert sequence Length = 801 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 ttgcacatgtgcacatgcc 76 ||||||||||||||||||| Sbjct: 384 ttgcacatgtgcacatgcc 366
>gb|AC021396.6|AC021396 Homo sapiens, clone RP11-28I2, complete sequence Length = 200673 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 gcagctgttggcttgcagg 55 ||||||||||||||||||| Sbjct: 183512 gcagctgttggcttgcagg 183494
>gb|AC107739.9| Mus musculus chromosome 7, clone RP23-345M1, complete sequence Length = 205227 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 ttgcacatgtgcacatgcc 76 ||||||||||||||||||| Sbjct: 173097 ttgcacatgtgcacatgcc 173115
>gb|AF130571.1|AF130571 Felis catus clone Fca220 microsatellite sequence Length = 343 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 cagactctgtccccaacca 99 ||||||||||||||||||| Sbjct: 204 cagactctgtccccaacca 222
>dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete sequence Length = 177483 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ctctgtccccaaccactcc 103 ||||||||||||||||||| Sbjct: 84425 ctctgtccccaaccactcc 84407
>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence Length = 200656 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 95 aaccactcccacaatgggaaatc 117 ||||| ||||||||||||||||| Sbjct: 168086 aaccaatcccacaatgggaaatc 168064
>gb|AC157811.3| Mus musculus chromosome 1, clone RP24-377C24, complete sequence Length = 188752 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 aattgcacatgtgcacatg 74 ||||||||||||||||||| Sbjct: 186000 aattgcacatgtgcacatg 185982
>gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, complete sequence Length = 230474 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 aattgcacatgtgcacatg 74 ||||||||||||||||||| Sbjct: 149073 aattgcacatgtgcacatg 149091
>emb|AL844190.5| Mouse DNA sequence from clone RP23-425H15 on chromosome 4, complete sequence Length = 211151 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 tctgtccccaaccactccc 104 ||||||||||||||||||| Sbjct: 51660 tctgtccccaaccactccc 51642
>emb|AL645731.8| Mouse DNA sequence from clone RP23-423G13 on chromosome 4, complete sequence Length = 148213 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 gcagctgttggcttgcagg 55 ||||||||||||||||||| Sbjct: 93169 gcagctgttggcttgcagg 93151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 900,156 Number of Sequences: 3902068 Number of extensions: 900156 Number of successful extensions: 67054 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66975 Number of HSP's gapped (non-prelim): 79 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)