Clone Information

BLAST Search Result

Clone Name	rbags25a21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476360.1\| Oryza sativa (japonica cultivar-group), mRNA	452	e-124
2	dbj\|AK066373.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	452	e-124
3	ref\|NM_184948.1\| Oryza sativa (japonica cultivar-group), mRNA	204	3e-49
4	dbj\|AK068863.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	1e-23
5	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
6	dbj\|AP005869.3\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
7	gb\|AC016781.6\| Oryza sativa (japonica cultivar-group) clone OSJN...	62	2e-06
8	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	62	2e-06
9	gb\|AC084404.8\|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A...	62	2e-06
10	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	62	2e-06
11	gb\|AC135495.2\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.002
12	emb\|Z50033.1\|CACSPC C.acetobutylicum cspC gene	44	0.55
13	gb\|BT013938.1\| Lycopersicon esculentum clone 132961F, mRNA sequence	42	2.2
14	gb\|AC122324.4\| Mus musculus BAC clone RP23-333I5 from chromosome...	42	2.2
15	gb\|AC022495.17\| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Canc...	42	2.2
16	gb\|AC022424.6\| Homo sapiens chromosome 5 clone CTD-2297D10, comp...	42	2.2
17	dbj\|AB193043.1\| Lycopersicon esculentum LeTH3 mRNA for tobamovir...	42	2.2
18	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
19	dbj\|AP004024.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
20	dbj\|AP004798.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
21	gb\|AC101992.11\| Mus musculus chromosome 3, clone RP24-377J3, com...	42	2.2
22	gb\|CP000109.1\| Thiomicrospira crunogena XCL-2, complete genome	40	8.5
23	ref\|XM_635609.1\| Dictyostelium discoideum hypothetical protein (...	40	8.5
24	gb\|AC115920.11\| Mus musculus chromosome 1, clone RP24-496H1, com...	40	8.5
25	gb\|AC158617.9\| Mus musculus 10 BAC RP23-283O2 (Roswell Park Canc...	40	8.5
26	ref\|XM_824340.1\| Trypanosoma brucei TREU927 hypothetical protein...	40	8.5
27	gb\|AC124486.4\| Mus musculus BAC clone RP23-451E1 from chromosome...	40	8.5
28	gb\|AC122258.4\| Mus musculus BAC clone RP23-182F18 from 7, comple...	40	8.5
29	gb\|AC122307.4\| Mus musculus BAC clone RP23-287C21 from 12, compl...	40	8.5
30	gb\|AC101490.8\| Mus musculus chromosome 3, clone RP23-188O2, comp...	40	8.5
31	gb\|AC122728.32\| Medicago truncatula clone mth2-22l4, complete se...	40	8.5
32	emb\|AL662918.7\| Human DNA sequence from clone RP11-176B3 on chro...	40	8.5
33	emb\|AL109917.22\|HSDJ140A9 Human DNA sequence from clone RP1-140A...	40	8.5
34	gb\|AC008742.9\| Homo sapiens chromosome 19 clone CTD-2553C6, comp...	40	8.5
35	gb\|AF399011.1\| Pseudomonas phage phiKZ, complete genome	40	8.5
36	tpg\|BK001428.1\| TPA: TPA_exp: Homo sapiens NOELIN2_V1 (OLFM2) ge...	40	8.5
37	gb\|AC154626.2\| Mus musculus BAC clone RP23-311B8 from chromosome...	40	8.5
38	gb\|AC084013.5\| Homo sapiens BAC clone RP11-169I13 from 2, comple...	40	8.5
39	gb\|AC175034.1\| Mus musculus BAC clone RP23-204E23 from chromosom...	40	8.5
40	gb\|DQ163920.1\| Bacteriophage SD1-M, complete genome	40	8.5
41	gb\|AC122193.5\| Mus musculus BAC clone RP23-45G16 from 6, complet...	40	8.5
42	gb\|AC111080.9\| Mus musculus chromosome 3, clone RP23-132D7, comp...	40	8.5
43	gb\|AC140287.3\| Mus musculus BAC clone RP23-346L16 from 6, comple...	40	8.5

>ref|XM_476360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1205

 Score =  452 bits (228), Expect = e-124
 Identities = 384/436 (88%)
 Strand = Plus / Minus

                                                                       
Query: 192 cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 251
           |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 916 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 857

                                                                       
Query: 252 aacatataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagca 311
           |||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
Sbjct: 856 aacatatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaa 797

                                                                       
Query: 312 tcaaatgcagatattgccaccacgatgcatcttatcaggaaacaggtgcagcagattgtc 371
           |||||||| ||||| |||||||| ||||| |||||||||||||| |  ||||||||||  
Sbjct: 796 tcaaatgctgatatcgccaccactatgcaccttatcaggaaacaagcacagcagattgca 737

                                                                       
Query: 372 gtcacagtcccaacctcataaagcttcttttttcgcccctttgattcaatggggaaacgt 431
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 gtcactgtcccaacctcataaagcttcttttttcgccccttagattcaatggggaaacgt 677

                                                                       
Query: 432 ctcagcaagacaaacagcctcccaccatatactgcgaaaccaagaagggccacagcggag 491
           ||||||||||  |||||||| |||||||||||||  || |||||||| ||||||   |||
Sbjct: 676 ctcagcaagaagaacagccttccaccatatactgaaaagccaagaagagccacaaaagag 617

                                                                       
Query: 492 acagatacgatgaagattttgctgaccagctcaaccaacggattgtcgtttattccaagg 551
           |||  ||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 616 acaactactatgaagattttgctgaccagctcaaccaatgggttgtcgttgattccgagg 557

                                                                       
Query: 552 tacacccaaatacagacctgaattgcatatacgatactattaacggctacgtatataatc 611
           || ||||||||||| ||||||||||  || | |||   ||| ||||||| ||||||||||
Sbjct: 556 tatacccaaatacaaacctgaattgtgtaaatgatggcattgacggctatgtatataatc 497

                           
Query: 612 cttaacttatcggttg 627
           ||||||||||| ||||
Sbjct: 496 cttaacttatctgttg 481

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>dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062G10, full
           insert sequence
          Length = 1205

 Score =  452 bits (228), Expect = e-124
 Identities = 384/436 (88%)
 Strand = Plus / Minus

                                                                       
Query: 192 cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 251
           |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 916 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 857

                                                                       
Query: 252 aacatataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagca 311
           |||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
Sbjct: 856 aacatatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaa 797

                                                                       
Query: 312 tcaaatgcagatattgccaccacgatgcatcttatcaggaaacaggtgcagcagattgtc 371
           |||||||| ||||| |||||||| ||||| |||||||||||||| |  ||||||||||  
Sbjct: 796 tcaaatgctgatatcgccaccactatgcaccttatcaggaaacaagcacagcagattgca 737

                                                                       
Query: 372 gtcacagtcccaacctcataaagcttcttttttcgcccctttgattcaatggggaaacgt 431
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 gtcactgtcccaacctcataaagcttcttttttcgccccttagattcaatggggaaacgt 677

                                                                       
Query: 432 ctcagcaagacaaacagcctcccaccatatactgcgaaaccaagaagggccacagcggag 491
           ||||||||||  |||||||| |||||||||||||  || |||||||| ||||||   |||
Sbjct: 676 ctcagcaagaagaacagccttccaccatatactgaaaagccaagaagagccacaaaagag 617

                                                                       
Query: 492 acagatacgatgaagattttgctgaccagctcaaccaacggattgtcgtttattccaagg 551
           |||  ||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 616 acaactactatgaagattttgctgaccagctcaaccaatgggttgtcgttgattccgagg 557

                                                                       
Query: 552 tacacccaaatacagacctgaattgcatatacgatactattaacggctacgtatataatc 611
           || ||||||||||| ||||||||||  || | |||   ||| ||||||| ||||||||||
Sbjct: 556 tatacccaaatacaaacctgaattgtgtaaatgatggcattgacggctatgtatataatc 497

                           
Query: 612 cttaacttatcggttg 627
           ||||||||||| ||||
Sbjct: 496 cttaacttatctgttg 481

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>ref|NM_184948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1341

 Score =  204 bits (103), Expect = 3e-49
 Identities = 223/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 198  ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtcaacata 257
            ||||||||||| || |||||||| ||||| || || || ||||||||||| || ||||||
Sbjct: 1043 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctccgttaacata 984

                                                                        
Query: 258  taatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaaat 317
            || || |||||||| || |||||||||||||||||||| | ||| | ||||| |||||||
Sbjct: 983  tagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatcaaat 924

                                                                        
Query: 318  gcagatattgccaccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcaca 377
            |  || || |||||||| ||||||||||||| |||||| ||| |||| ||||  ||||||
Sbjct: 923  gatgacatcgccaccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcaca 864

                                                                        
Query: 378  gtcccaacctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagc 437
            |||||||||||||| ||||||||| | || |||||||||||||| || ||||| ||||||
Sbjct: 863  gtcccaacctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagc 804

                                   
Query: 438  aagacaaacagcctcccaccata 460
            | || ||| ||||| ||||||||
Sbjct: 803  atgaaaaatagccttccaccata 781



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 546 ccaaggtacacccaaatacagacctgaattgcatatacgatactattaacggctacgtat 605
           |||||||| | ||||||||| ||||| ||| ||||||  | || |||||| || | ||||
Sbjct: 695 ccaaggtatatccaaatacaaacctggattacatatataacaccattaactgccatgtat 636

                     
Query: 606 ataatcctta 615
           ||||||||||
Sbjct: 635 ataatcctta 626

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>dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P13, full
           insert sequence
          Length = 1929

 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/132 (86%)
 Strand = Plus / Minus

                                                                       
Query: 329 caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacctc 388
           |||||| ||||||||||||| |||||| ||| |||| ||||  |||||||||||||||||
Sbjct: 892 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacctc 833

                                                                       
Query: 389 ataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagacaaacag 448
           ||| ||||||||| | || |||||||||||||| || ||||| ||||||| || ||| ||
Sbjct: 832 atagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaaaatag 773

                       
Query: 449 cctcccaccata 460
           ||| ||||||||
Sbjct: 772 ccttccaccata 761



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 103/121 (85%)
 Strand = Plus / Minus

                                                                        
Query: 198  ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtcaacata 257
            ||||||||||| || |||||||| ||||| || || || ||||||||||| || ||||||
Sbjct: 1631 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctccgttaacata 1572

                                                                        
Query: 258  taatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaaat 317
            || || |||||||| || |||||||||||||||||||| | ||| | ||||| |||||||
Sbjct: 1571 tagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatcaaat 1512

             
Query: 318  g 318
            |
Sbjct: 1511 g 1511



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 546 ccaaggtacacccaaatacagacctgaattgcatatacgatactattaacggctacgtat 605
           |||||||| | ||||||||| ||||| ||| ||||||  | || |||||| || | ||||
Sbjct: 675 ccaaggtatatccaaatacaaacctggattacatatataacaccattaactgccatgtat 616

                     
Query: 606 ataatcctta 615
           ||||||||||
Sbjct: 615 ataatcctta 606

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score =  111 bits (56), Expect = 3e-21
 Identities = 65/68 (95%)
 Strand = Plus / Plus

                                                                          
Query: 384    acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 443
              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct: 147727 acctcataaagcttcttttttcgccccttagattcaatggggaaacgtctcagcaagaag 147786

                      
Query: 444    aacagcct 451
              ||||||||
Sbjct: 147787 aacagcct 147794



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                          
Query: 453    ccaccatatactgcgaaaccaagaagggccacagcggagacagatacgatgaagattttg 512
              |||||||||||||  || |||||||| ||||||   ||||||  ||| ||||||||||||
Sbjct: 147903 ccaccatatactgaaaagccaagaagagccacaaaagagacaactactatgaagattttg 147962

                                                                         
Query: 513    ctgaccagctcaaccaacggattgtcgtttattccaaggtacacccaaatacagacctg 571
              ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 147963 ctgaccagctcaaccaatgggttgtcgttgattccgaggtatacccaaatacaaacctg 148021



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                          
Query: 254    catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 313
              |||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct: 146616 catatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaatc 146675

                                 
Query: 314    aaatgcagatattgccacc 332
              |||||| ||||| ||||||
Sbjct: 146676 aaatgctgatatcgccacc 146694



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                          
Query: 192    cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 251
              |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 146437 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 146496

                 
Query: 252    aac 254
              |||
Sbjct: 146497 aac 146499



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 594    acggctacgtatataatccttaacttatcggttg 627
              ||||||| ||||||||||||||||||||| ||||
Sbjct: 148232 acggctatgtatataatccttaacttatctgttg 148265



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 330    accacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 387
              ||||| ||||| |||||||||||||| |  ||||||||||  ||||| ||||||||||
Sbjct: 146965 accactatgcaccttatcaggaaacaagcacagcagattgcagtcactgtcccaacct 147022

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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score =  111 bits (56), Expect = 3e-21
 Identities = 65/68 (95%)
 Strand = Plus / Plus

                                                                          
Query: 384    acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 443
              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct: 147026 acctcataaagcttcttttttcgccccttagattcaatggggaaacgtctcagcaagaag 147085

                      
Query: 444    aacagcct 451
              ||||||||
Sbjct: 147086 aacagcct 147093



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                          
Query: 453    ccaccatatactgcgaaaccaagaagggccacagcggagacagatacgatgaagattttg 512
              |||||||||||||  || |||||||| ||||||   ||||||  ||| ||||||||||||
Sbjct: 147202 ccaccatatactgaaaagccaagaagagccacaaaagagacaactactatgaagattttg 147261

                                                                         
Query: 513    ctgaccagctcaaccaacggattgtcgtttattccaaggtacacccaaatacagacctg 571
              ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 147262 ctgaccagctcaaccaatgggttgtcgttgattccgaggtatacccaaatacaaacctg 147320



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                          
Query: 254    catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 313
              |||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct: 145915 catatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaatc 145974

                                 
Query: 314    aaatgcagatattgccacc 332
              |||||| ||||| ||||||
Sbjct: 145975 aaatgctgatatcgccacc 145993



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                          
Query: 192    cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 251
              |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 145736 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 145795

                 
Query: 252    aac 254
              |||
Sbjct: 145796 aac 145798



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 594    acggctacgtatataatccttaacttatcggttg 627
              ||||||| ||||||||||||||||||||| ||||
Sbjct: 147531 acggctatgtatataatccttaacttatctgttg 147564



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 330    accacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 387
              ||||| ||||| |||||||||||||| |  ||||||||||  ||||| ||||||||||
Sbjct: 146264 accactatgcaccttatcaggaaacaagcacagcagattgcagtcactgtcccaacct 146321

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>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
              sequence
          Length = 151269

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                         
Query: 329    caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 387
              |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 147455 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 147513



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 254    catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 313
              |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 146772 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 146831

                   
Query: 314    aaatg 318
              |||||
Sbjct: 146832 aaatg 146836



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 384    acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 443
              |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 147821 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 147880

                      
Query: 444    aacagcct 451
              || |||||
Sbjct: 147881 aatagcct 147888



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 198    ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 247
              ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 146643 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 146692

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 329      caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 387
                |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 20229369 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 20229427



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 254      catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 313
                |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 20228686 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 20228745

                     
Query: 314      aaatg 318
                |||||
Sbjct: 20228746 aaatg 20228750



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 384      acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 443
                |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 20229735 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 20229794

                        
Query: 444      aacagcct 451
                || |||||
Sbjct: 20229795 aatagcct 20229802



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 262     agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 315
               ||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 8365918 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 8365971



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 198      ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 247
                ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 20228557 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 20228606

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>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
             sequence
          Length = 156929

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 329   caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 387
             |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 24676 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 24734



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 254   catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 313
             |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 23993 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 24052

                  
Query: 314   aaatg 318
             |||||
Sbjct: 24053 aaatg 24057



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 384   acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 443
             |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 25042 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 25101

                     
Query: 444   aacagcct 451
             || |||||
Sbjct: 25102 aatagcct 25109



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 198   ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 247
             ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 23864 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 23913

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 329      caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 387
                |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 20222398 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 20222456



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 254      catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 313
                |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 20221715 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 20221774

                     
Query: 314      aaatg 318
                |||||
Sbjct: 20221775 aaatg 20221779



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 384      acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 443
                |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 20222764 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 20222823

                        
Query: 444      aacagcct 451
                || |||||
Sbjct: 20222824 aatagcct 20222831



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 262     agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 315
               ||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 8363753 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 8363806



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 198      ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 247
                ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 20221586 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 20221635

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>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11,
              complete sequence
          Length = 126040

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 262    agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 315
              ||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 103174 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 103227

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>emb|Z50033.1|CACSPC C.acetobutylicum cspC gene
          Length = 2105

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 491 gacagatacgatgaagattttgctga 516
           |||||||| |||||||||||||||||
Sbjct: 321 gacagatatgatgaagattttgctga 346

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>gb|BT013938.1| Lycopersicon esculentum clone 132961F, mRNA sequence
          Length = 1286

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 99/125 (79%)
 Strand = Plus / Minus

                                                                       
Query: 338 gcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacctcataaagctt 397
           |||||| || |||||||||||| | || || |  ||||| |  |||||||||| ||||||
Sbjct: 721 gcatctaatgaggaaacaggtgaaacatatggcagtcaccgatccaacctcatgaagctt 662

                                                                       
Query: 398 cttttttcgcccctttgattcaatggggaaacgtctcagcaagacaaacagcctcccacc 457
           |||| | | ||| || |||||||| ||||| || | ||||| || ||| | ||| |||||
Sbjct: 661 ctttctcctccctttagattcaatagggaagcgccgcagcatgagaaataaccttccacc 602

                
Query: 458 atata 462
           |||||
Sbjct: 601 atata 597

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>gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome 3, complete sequence
          Length = 243378

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 401   ttttcgcccctttgattcaat 421
             |||||||||||||||||||||
Sbjct: 79668 ttttcgcccctttgattcaat 79648

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>gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156054

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 84    cagacatgtaaaattttgagcactt 108
             ||||||||||||||||||| |||||
Sbjct: 97261 cagacatgtaaaattttgaacactt 97285

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>gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, complete sequence
          Length = 104776

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    agacatgtaaaattttgagca 105
             |||||||||||||||||||||
Sbjct: 83592 agacatgtaaaattttgagca 83572

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>dbj|AB193043.1| Lycopersicon esculentum LeTH3 mRNA for tobamovirus multiplication 1
           homolog 3, complete cds
          Length = 1278

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 99/125 (79%)
 Strand = Plus / Minus

                                                                       
Query: 338 gcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacctcataaagctt 397
           |||||| || |||||||||||| | || || |  ||||| |  |||||||||| ||||||
Sbjct: 720 gcatctaatgaggaaacaggtgaaacatatggcagtcaccgatccaacctcatgaagctt 661

                                                                       
Query: 398 cttttttcgcccctttgattcaatggggaaacgtctcagcaagacaaacagcctcccacc 457
           |||| | | ||| || |||||||| ||||| || | ||||| || ||| | ||| |||||
Sbjct: 660 ctttctcctccctttagattcaatagggaagcgccgcagcatgagaaataaccttccacc 601

                
Query: 458 atata 462
           |||||
Sbjct: 600 atata 596

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 87       acatgtaaaattttgagcact 107
                |||||||||||||||||||||
Sbjct: 12611563 acatgtaaaattttgagcact 12611583

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>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1134_B09
          Length = 105247

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 87   acatgtaaaattttgagcact 107
            |||||||||||||||||||||
Sbjct: 8622 acatgtaaaattttgagcact 8642

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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     acatgtaaaattttgagcact 107
              |||||||||||||||||||||
Sbjct: 116096 acatgtaaaattttgagcact 116116

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>gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, complete sequence
          Length = 191967

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    ccagacatgtaaaattttgag 103
             |||||||||||||||||||||
Sbjct: 42478 ccagacatgtaaaattttgag 42458

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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    ataaagcttcttttttcgcc 408
              ||||||||||||||||||||
Sbjct: 976421 ataaagcttcttttttcgcc 976402

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>ref|XM_635609.1| Dictyostelium discoideum hypothetical protein (DDB0205608), partial
            mRNA
          Length = 9000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  gatgatccaaaacctccaaa 299
            ||||||||||||||||||||
Sbjct: 4382 gatgatccaaaacctccaaa 4363

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>gb|AC115920.11| Mus musculus chromosome 1, clone RP24-496H1, complete sequence
          Length = 161759

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    atacataagcacaaagacct 160
              ||||||||||||||||||||
Sbjct: 139125 atacataagcacaaagacct 139144

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>gb|AC158617.9| Mus musculus 10 BAC RP23-283O2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 240410

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   ctttgattcaatggggaaac 429
             ||||||||||||||||||||
Sbjct: 92471 ctttgattcaatggggaaac 92452

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>ref|XM_824340.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.5340)
           partial mRNA
          Length = 1074

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 catcagcatcaaatgcagat 323
           ||||||||||||||||||||
Sbjct: 604 catcagcatcaaatgcagat 585

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>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete
           sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 tctgtcaacatataatagaa 265
           ||||||||||||||||||||
Sbjct: 611 tctgtcaacatataatagaa 630

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>gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, complete sequence
          Length = 186441

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ggatgatccaaaacctccaa 298
             ||||||||||||||||||||
Sbjct: 61251 ggatgatccaaaacctccaa 61270

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>gb|AC122307.4| Mus musculus BAC clone RP23-287C21 from 12, complete sequence
          Length = 194202

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tctgtcaacatataatagaa 265
             ||||||||||||||||||||
Sbjct: 47327 tctgtcaacatataatagaa 47308

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>gb|AC101490.8| Mus musculus chromosome 3, clone RP23-188O2, complete sequence
          Length = 247848

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    ctttgatgcttttggaaaac 55
             ||||||||||||||||||||
Sbjct: 58970 ctttgatgcttttggaaaac 58989

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>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   taaaattttgagcacttcca 111
            ||||||||||||||||||||
Sbjct: 7511 taaaattttgagcacttcca 7530

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>emb|AL662918.7| Human DNA sequence from clone RP11-176B3 on chromosome 1, complete
            sequence
          Length = 90140

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  tagaattggatgatccaaaa 291
            ||||||||||||||||||||
Sbjct: 4707 tagaattggatgatccaaaa 4688

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>emb|AL109917.22|HSDJ140A9 Human DNA sequence from clone RP1-140A9 on chromosome 1p36.2-36.33
             Contains the 5' end of the GNB1 gene for guanine
             nucleotide binding protein (G protein) beta polypeptide 1,
             a novel gene, the gene for calmodulin-like protein
             (LOC163688), a novel gene (LOC339456), a novel gene
             (LOC348524), a novel gene (LOC339458, FLJ37323) , a novel
             gene ( LOC339459) similar to KIAA1751 and three CpG
             islands, complete sequence
          Length = 165191

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   agaagaaatctagaattgga 281
             ||||||||||||||||||||
Sbjct: 44050 agaagaaatctagaattgga 44031

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>gb|AC008742.9| Homo sapiens chromosome 19 clone CTD-2553C6, complete sequence
          Length = 194624

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   cccaacctcataaagcttct 399
             ||||||||||||||||||||
Sbjct: 47809 cccaacctcataaagcttct 47828

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>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome
          Length = 280334

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 552   tacacccaaatacagacctgaatt 575
             |||| |||||||||||||||||||
Sbjct: 67649 tacatccaaatacagacctgaatt 67626

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>tpg|BK001428.1| TPA: TPA_exp: Homo sapiens NOELIN2_V1 (OLFM2) gene, complete cds
          Length = 84679

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   cccaacctcataaagcttct 399
             ||||||||||||||||||||
Sbjct: 57029 cccaacctcataaagcttct 57010

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>gb|AC154626.2| Mus musculus BAC clone RP23-311B8 from chromosome 14, complete sequence
          Length = 194638

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   gcttcttttttcgcccctttgatt 417
             |||||||||||| |||||||||||
Sbjct: 90806 gcttcttttttcccccctttgatt 90783

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>gb|AC084013.5| Homo sapiens BAC clone RP11-169I13 from 2, complete sequence
          Length = 105604

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 252   aacatataatagaagaaatctaga 275
             ||||||||||||||||| ||||||
Sbjct: 15007 aacatataatagaagaattctaga 14984

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>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence
          Length = 208487

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    ggatgatccaaaacctccaa 298
              ||||||||||||||||||||
Sbjct: 188645 ggatgatccaaaacctccaa 188626

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>gb|DQ163920.1| Bacteriophage SD1-M, complete genome
          Length = 281083

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 552   tacacccaaatacagacctgaatt 575
             |||| |||||||||||||||||||
Sbjct: 68744 tacatccaaatacagacctgaatt 68721

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>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence
          Length = 211512

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 539    gtttattccaaggtacacccaaat 562
              |||||||| |||||||||||||||
Sbjct: 122044 gtttattcaaaggtacacccaaat 122021

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>gb|AC111080.9| Mus musculus chromosome 3, clone RP23-132D7, complete sequence
          Length = 202074

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     ctttgatgcttttggaaaac 55
              ||||||||||||||||||||
Sbjct: 190851 ctttgatgcttttggaaaac 190870

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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 539    gtttattccaaggtacacccaaat 562
              |||||||| |||||||||||||||
Sbjct: 213036 gtttattcaaaggtacacccaaat 213059


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,378,169
Number of Sequences: 3902068
Number of extensions: 5378169
Number of successful extensions: 107689
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 107376
Number of HSP's gapped (non-prelim): 313
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result