ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 363 2e-97
2gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 355 4e-95
3emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 347 1e-92
4emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 343 2e-91
5emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 297 8e-78
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 204 9e-50
7gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 52 8e-04
8emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 46 0.050
9ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.20
10gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.20
11gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.20
12emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in... 44 0.20
13emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 i... 44 0.20
14gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 ma... 44 0.20
15dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.20
16dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.20
17dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.20
18dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.20
19emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in... 44 0.20
20gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 42 0.78
21emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.78
22emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in... 42 0.78
23gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 42 0.78
24gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.78
25gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, com... 40 3.1
26gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, compl... 40 3.1
27gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.1
28gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
29gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.1
31gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, com... 40 3.1
32ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 3.1
33gb|AC132050.4| Rattus norvegicus 20 BAC CH230-118G13 (Children's... 40 3.1
34emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chr... 40 3.1
35emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 40 3.1
36emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 40 3.1
37gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 40 3.1
38gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 3.1
39gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 40 3.1
40gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 3.1
41gb|AC007976.4| Drosophila melanogaster, chromosome 2L, region 22... 40 3.1
42dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary ... 40 3.1
43dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
47gb|AC009101.7|AC009101 Homo sapiens chromosome 16 clone RP11-439... 40 3.1
48gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complet... 40 3.1
49dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
50dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
51emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 3.1
52dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
53gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 40 3.1
54gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 ... 40 3.1
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
56gb|AC004340.1|AC004340 Drosophila melanogaster DNA sequence (P1 ... 40 3.1
57emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.1
58emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 3.1
59gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 40 3.1 
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  363 bits (183), Expect = 2e-97
 Identities = 215/226 (95%)
 Strand = Plus / Minus

                                                                       
Query: 14  tattgtataatattatgcgtacgtgcatatacatagccaccgacagcattcacatacaag 73
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 830 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 771

                                                                       
Query: 74  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 133
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 711

                                                                       
Query: 134 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 193
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ataagaaagataaatggacaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 651

                                                         
Query: 194 tggcactttatatgtggcccatcggcagngagctgtttatgccttg 239
           |||||||||||||| ||||| | |  || |||||||||||||||||
Sbjct: 650 tggcactttatatgcggcccgtggtgagtgagctgtttatgccttg 605
to top
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  355 bits (179), Expect = 4e-95
 Identities = 214/226 (94%)
 Strand = Plus / Minus

                                                                       
Query: 14  tattgtataatattatgcgtacgtgcatatacatagccaccgacagcattcacatacaag 73
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 283 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 224

                                                                       
Query: 74  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 133
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 223 catgctttctcgagccatgttcgtacatgaacatggacatacacatattcttaggaacaa 164

                                                                       
Query: 134 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 104

                                                         
Query: 194 tggcactttatatgtggcccatcggcagngagctgtttatgccttg 239
           ||||||||||||| |||||  |||  || |||||||||| ||||||
Sbjct: 103 tggcactttatatatggcctgtcgtgagtgagctgtttaggccttg 58
to top
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  347 bits (175), Expect = 1e-92
 Identities = 213/226 (94%)
 Strand = Plus / Minus

                                                                       
Query: 14  tattgtataatattatgcgtacgtgcatatacatagccaccgacagcattcacatacaag 73
           |||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| ||
Sbjct: 709 tattgtataatattatgcgtccgttcatatacatagccaccgatagcattctcatacgag 650

                                                                       
Query: 74  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 133
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 590

                                                                       
Query: 134 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 530

                                                         
Query: 194 tggcactttatatgtggcccatcggcagngagctgtttatgccttg 239
           ||||||||||||| |||||  |||  || |||||||||| ||||||
Sbjct: 529 tggcactttatatatggcctgtcgtgagtgagctgtttaggccttg 484
to top
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  343 bits (173), Expect = 2e-91
 Identities = 185/189 (97%)
 Strand = Plus / Minus

                                                                       
Query: 14  tattgtataatattatgcgtacgtgcatatacatagccaccgacagcattcacatacaag 73
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 790 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 731

                                                                       
Query: 74  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 133
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 671

                                                                       
Query: 134 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 611

                    
Query: 194 tggcacttt 202
           |||||||||
Sbjct: 610 tggcacttt 602
to top
>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  297 bits (150), Expect = 8e-78
 Identities = 200/217 (92%)
 Strand = Plus / Minus

                                                                       
Query: 23  atattatgcgtacgtgcatatacatagccaccgacagcattcacatacaagcatgttttc 82
           |||||||| | | |||||||||||||||||||||  |||||||||||| |||| | ||||
Sbjct: 549 atattatgtgcatgtgcatatacatagccaccgattgcattcacatacgagcacgctttc 490

                                                                       
Query: 83  tcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag 142
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 489 tcgagccatgttgttacatgaacatggacatacacatattcttaggaacaagtaagaaag 430

                                                                       
Query: 143 ataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 202
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acaaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 370

                                                
Query: 203 atatgtggcccatcggcagngagctgtttatgccttg 239
           ||||||||||| | |  || |||||||||| ||||||
Sbjct: 369 atatgtggcccgtggtgagtgagctgtttaggccttg 333
to top
>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  204 bits (103), Expect = 9e-50
 Identities = 203/225 (90%), Gaps = 10/225 (4%)
 Strand = Plus / Minus

                                                                       
Query: 15  attgtataatattatgcgtacgtgcatatacatagccaccgacagcattcacatacaagc 74
           |||||||||||||||| | | ||||||||||||||||||||| ||||||||||||| |||
Sbjct: 753 attgtataatattatgtgcatgtgcatatacatagccaccgatagcattcacatacgagc 694

                                                                       
Query: 75  atgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaa 134
           ||| ||||||||| |||||||||||||||||||||   |||||| ||| |||||||| ||
Sbjct: 693 atgctttctcgag-catgttggtacatgaacatgggactacacacatt-ttaggaac-aa 637

                                                                       
Query: 135 taagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaat 194
           |||||||||| |||||||||||||||||  |||| |||||||||||||| ||||||||||
Sbjct: 636 taagaaagat-aatggagaaggaaaacc--aagc-atgtcagagttgac-aaactgcaat 582

                                                        
Query: 195 ggcactttatatgtggcccatcggcagngagctgtttatgccttg 239
           ||||| |||||||| |||||||| ||| |||||||||||||||||
Sbjct: 581 ggcac-ttatatgt-gcccatcgtcagtgagctgtttatgccttg 539
to top
>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 131   caaataagaaagataaatggagaaggaaaa 160
             ||||||||||||| ||||||||||||||||
Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
to top
>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 96     gtacatgaacatggacatacaca 118
              |||||||||||||||||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
to top
>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
to top
>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
to top
>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
to top
>emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in linkage group 5,
             complete sequence
          Length = 140947

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 8     acatattattgtataatattat 29
             ||||||||||||||||||||||
Sbjct: 93606 acatattattgtataatattat 93627
to top
>emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 in linkage group 5,
             complete sequence
          Length = 162716

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 8     acatattattgtataatattat 29
             ||||||||||||||||||||||
Sbjct: 75971 acatattattgtataatattat 75950
to top
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete
              sequence
          Length = 104016

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 9      catattattgtataatattatg 30
              ||||||||||||||||||||||
Sbjct: 102439 catattattgtataatattatg 102460
to top
>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
to top
>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
to top
>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
to top
>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 157 aaaacccaaagcaatgtcagagttgacaaa 186
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
to top
>emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in linkage group 11,
             complete sequence
          Length = 153270

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 5     ttgacatattattgtataatat 26
             ||||||||||||||||||||||
Sbjct: 88645 ttgacatattattgtataatat 88666
to top
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 120    attcttaggaacaaataagaaagat 144
              ||||||||||||||| |||||||||
Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
to top
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    agcaatgtcagagttgacaaa 186
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
to top
>emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in linkage group 14,
              complete sequence
          Length = 174366

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      catattattgtataatattat 29
              |||||||||||||||||||||
Sbjct: 161920 catattattgtataatattat 161900
to top
>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221540

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 120    attcttaggaacaaataagaaagat 144
              ||||||||||||||| |||||||||
Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
to top
>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 100  atgaacatggacatacacata 120
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
to top
>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence
          Length = 41406

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 96    gtacatgaacatggacatacacatattc 123
             ||||||||||||| ||||| ||||||||
Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
to top
>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence
          Length = 45765

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 96    gtacatgaacatggacatacacatattc 123
             ||||||||||||| ||||| ||||||||
Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
to top
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     aaacccaaagcaatgtcaga 177
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
to top
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 98   acatgaacatggacatacacatat 121
            ||||||||||| ||||||||||||
Sbjct: 4895 acatgaacatgaacatacacatat 4872
to top
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 98     acatgaacatggacatacacatat 121
              ||||||||||| ||||||||||||
Sbjct: 123589 acatgaacatgaacatacacatat 123566
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 98       acatgaacatggacatacacatat 121
                ||||||||||| ||||||||||||
Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
to top
>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   aaataagaaagataaatgga 151
             ||||||||||||||||||||
Sbjct: 75761 aaataagaaagataaatgga 75742
to top
>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
           (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 aaacccaaagcaatgtcaga 177
           ||||||||||||||||||||
Sbjct: 80  aaacccaaagcaatgtcaga 99
to top
>gb|AC132050.4| Rattus norvegicus 20 BAC CH230-118G13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 247624

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      acatattattgtataatatt 27
              ||||||||||||||||||||
Sbjct: 213642 acatattattgtataatatt 213623
to top
>emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chromosome 1 Contains the
             TAGLN2 gene for transgelin 2, the IGSF9 gene for
             immunoglobulin superfamily member 9, the SLAMF9 gene for
             SLAM family member 9, a novel gene and three CpG islands,
             complete sequence
          Length = 80398

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   aaagataaatggagaaggaa 158
             ||||||||||||||||||||
Sbjct: 46055 aaagataaatggagaaggaa 46074
to top
>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    aaaactgcaatggcacttta 203
              ||||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttta 166575
to top
>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   cagagttgacaaaactgcaatggc 197
             |||||||||||||||| |||||||
Sbjct: 88758 cagagttgacaaaactacaatggc 88735
to top
>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151302

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 114  acacatattcttaggaacaaataagaaa 141
            |||||||||||||| |||||| ||||||
Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
to top
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   gaacaaataagaaagataaa 147
             ||||||||||||||||||||
Sbjct: 45388 gaacaaataagaaagataaa 45407
to top
>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    aagataaatggagaaggaaa 159
              ||||||||||||||||||||
Sbjct: 190875 aagataaatggagaaggaaa 190894
to top
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 100   atgaacatggacatacacatattc 123
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
to top
>gb|AC007976.4| Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone
              BACR01K07, complete sequence
          Length = 175867

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     atattattgtataatattat 29
              ||||||||||||||||||||
Sbjct: 122920 atattattgtataatattat 122901
to top
>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330038M22
           product:unclassifiable, full insert sequence
          Length = 3845

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 96  gtacatgaacatggacatacacatattc 123
           ||||||||||||| ||||| ||||||||
Sbjct: 695 gtacatgaacatgtacatatacatattc 722
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     gataaatggagaaggaaaac 161
               ||||||||||||||||||||
Sbjct: 4847879 gataaatggagaaggaaaac 4847860
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 98       acatgaacatggacatacacatat 121
                ||||||||||| ||||||||||||
Sbjct: 11682609 acatgaacatgaacatacacatat 11682586



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 98       acatgaacatggacatacacatat 121
                ||||||||||| ||||||||||||
Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 98       acatgaacatggacatacacatat 121
                ||||||||||| ||||||||||||
Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     agaaggaaaacccaaagcaa 170
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
to top
>gb|AC009101.7|AC009101 Homo sapiens chromosome 16 clone RP11-439I14, complete sequence
          Length = 172293

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    atattattgtataatattat 29
             ||||||||||||||||||||
Sbjct: 17042 atattattgtataatattat 17061
to top
>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence
          Length = 129164

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    atattattgtataatattat 29
             ||||||||||||||||||||
Sbjct: 31292 atattattgtataatattat 31273
to top
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 98   acatgaacatggacatacacatat 121
            ||||||||||| ||||||||||||
Sbjct: 5348 acatgaacatgaacatacacatat 5371
to top
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 98    acatgaacatggacatacacatat 121
             ||||||||||| ||||||||||||
Sbjct: 31151 acatgaacatgaacatacacatat 31128
to top
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gataaatggagaaggaaaac 161
             ||||||||||||||||||||
Sbjct: 90543 gataaatggagaaggaaaac 90562
to top
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   agaaggaaaacccaaagcaa 170
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
to top
>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    aagataaatggagaaggaaa 159
              ||||||||||||||||||||
Sbjct: 104567 aagataaatggagaaggaaa 104586
to top
>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete
              sequence
          Length = 346734

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     atattattgtataatattat 29
              ||||||||||||||||||||
Sbjct: 324111 atattattgtataatattat 324092
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     gataaatggagaaggaaaac 161
               ||||||||||||||||||||
Sbjct: 4847860 gataaatggagaaggaaaac 4847841
to top
>gb|AC004340.1|AC004340 Drosophila melanogaster DNA sequence (P1 DS07020 (D238)), complete
            sequence
          Length = 51050

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   atattattgtataatattat 29
            ||||||||||||||||||||
Sbjct: 2952 atattattgtataatattat 2933
to top
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    gataaatggagaaggaaaac 161
              ||||||||||||||||||||
Sbjct: 112081 gataaatggagaaggaaaac 112100
to top
>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   atgaacatggacatacacat 119
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
to top
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 96    gtacatgaacatggacatacacatattc 123
             ||||||||||||| ||||| ||||||||
Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,797,889
Number of Sequences: 3902068
Number of extensions: 2797889
Number of successful extensions: 58932
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58743
Number of HSP's gapped (non-prelim): 183
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top