ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YFC8_YEAST (P43569) Probable ATP-dependent transporter YFL028C 51 6e-07
2RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-) 30 1.8
3MODC_PHOLL (Q7N6R3) Molybdenum import ATP-binding protein modC (... 29 2.3
4RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-) 28 5.2
5RELN_CHICK (O93574) Reelin (EC 3.4.21.-) (Fragment) 27 8.9
6RBLL1_RHOPA (Q6N7T7) Ribulose bisphosphate carboxylase-like prot... 27 8.9
7HAT3_ARATH (P46602) Homeobox-leucine zipper protein HAT3 (HD-ZIP... 27 8.9
8NRTC_SYNP7 (P38045) Nitrate transport ATP-binding protein nrtC 27 8.9
9MODC_MANSM (Q65SW3) Molybdenum import ATP-binding protein modC (... 27 8.9

>YFC8_YEAST (P43569) Probable ATP-dependent transporter YFL028C|
          Length = 289

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 24/63 (38%), Positives = 37/63 (58%)
 Frame = -1

Query: 401 DVLAKXNLXTYLKKECXEQGATIIYATHIFDGLDDWPTLXVYVAHGKLQLALPLEKVXEM 222
           DV+A+  L  +LK E   +  +++YATHIFDGL  WP    ++  GK+   L  +K  E 
Sbjct: 180 DVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKIVDNLDYQKDVEF 239

Query: 221 SQL 213
           S++
Sbjct: 240 SEV 242



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>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)|
          Length = 3460

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 296 NHPGHRRYVWHR*LLHLVPXIPS 364
           NH GH R VW     H++P +PS
Sbjct: 544 NHQGHNRNVWAVDFFHVLPVLPS 566



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>MODC_PHOLL (Q7N6R3) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)|
          Length = 354

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 401 DVLAKXNLXTYLKKECXEQGATIIYATHIFDGLDDWPTLXVYVAHGKLQLALPLEKVXEM 222
           D+  K  L  YL+K   E    I+Y +H  D +       + V +GK++    LE+V   
Sbjct: 160 DLPRKRELLPYLEKLSGEVNIPILYVSHNLDEILRLAENVLVVDNGKVRATGKLEEVWSS 219

Query: 221 SQLSL 207
           S L L
Sbjct: 220 SALRL 224



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>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)|
          Length = 3462

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 296 NHPGHRRYVWHR*LLHLVPXIPS 364
           NH GH + VW     H++P +PS
Sbjct: 546 NHQGHNQNVWAVDFFHVLPILPS 568



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>RELN_CHICK (O93574) Reelin (EC 3.4.21.-) (Fragment)|
          Length = 3209

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 296 NHPGHRRYVWHR*LLHLVPXIPS 364
           +H GH R VW     H++P +PS
Sbjct: 292 SHQGHNRNVWAVDYFHVLPVLPS 314



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>RBLL1_RHOPA (Q6N7T7) Ribulose bisphosphate carboxylase-like protein 1|
           (RuBisCO-like protein)
          Length = 368

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 368 LKKECXEQGATIIYATHIFDGLDD 297
           +++ C  +GA ++YA H+   LDD
Sbjct: 187 MREACAVRGAAMLYAPHVSGSLDD 210



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>HAT3_ARATH (P46602) Homeobox-leucine zipper protein HAT3 (HD-ZIP protein 3)|
          Length = 315

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 230 SPFLMAALVATSHEQHXQXELANHPGHRRYVW 325
           +P  +A+  ++SH QH Q    NHP   +  W
Sbjct: 28  NPMPLASYASSSHMQHMQQSNYNHPQKIQNTW 59



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>NRTC_SYNP7 (P38045) Nitrate transport ATP-binding protein nrtC|
          Length = 659

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 401 DVLAKXNLXTYLKKECXEQGATIIYATHIFD 309
           D L + NL   L + C E G T +  TH  D
Sbjct: 170 DALTRGNLQEQLMRICQEAGVTAVMVTHDVD 200



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>MODC_MANSM (Q65SW3) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)|
          Length = 352

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -1

Query: 401 DVLAKXNLXTYLKKECXEQGATIIYATHIFDGLDDWPTLXVYVAHGKLQLALPLEKV 231
           D+  K  L  YL+K   E    I+Y TH  D L       V +  GK+     LE +
Sbjct: 161 DLPRKRELLAYLEKLSQEINIPILYVTHSLDELFRLADFVVLLDEGKVAAFDSLENL 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,499,293
Number of Sequences: 219361
Number of extensions: 529583
Number of successful extensions: 1311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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