>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2|
           (Elongin A2) (EloA2) (Transcription elongation factor B
           polypeptide 3B)
          Length = 753

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 362 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGR 264
           TPPG + P PR +SR P        ++PA +GR
Sbjct: 135 TPPGQQRPHPRSHSREPRAERKCPRIAPADSGR 167

>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty|
           one protein) (Cyclin D-related protein) (Zinc finger
           MYND domain-containing protein 2)
          Length = 604

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNG 231
           PP +   APR +S +P    +  + SP A   +PSP +G  NG
Sbjct: 58  PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG 100

>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 246
           PPG   PAP  N   P     P N  P+++GR P P D
Sbjct: 343 PPGGPPPAPHVN---PAFFPPPGNNMPSSDGRGPPPGD 377

>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)|
          Length = 577

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNG 231
           PP +   APR +S +P    +  + SP A   +PSP +G  NG
Sbjct: 31  PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG 73

>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3|
           (Elongin A3) (EloA3) (Transcription elongation factor B
           polypeptide 3C)
          Length = 546

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 362 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSP 252
           TPPG + P PR  SR P        M+PA +G    P
Sbjct: 135 TPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDP 171

>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 350 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 249
           SRSP  + + RSP K+ S  +  P +  RSPSPR
Sbjct: 233 SRSPKAKSSRRSPAKSTS-RSPGPRSKSRSPSPR 265

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 350 SRSPAPRENSRSPMKAD---SPNNMSPAANGRSPSP 252
           +RSP+PR  S SP   D   SP   +P+   R PSP
Sbjct: 17  TRSPSPRTQSPSPRDEDGSRSPGERTPSPPSRDPSP 52



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 356 PGSRSPAPREN--SRSPMKADSPNNMSPAAN-GRSPSPR 249
           P SRSP PR    SR  +++ SP   SPA    RS SPR
Sbjct: 81  PRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPR 119



 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 356 PGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 222
           P +RSP PR +SR           SP   G+ P PR  +  G++R
Sbjct: 118 PRARSPPPRRHSR-----------SPPLRGQPPPPRHRDAGGDYR 151



 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 356 PGSRSPAPRENSRSPMKADSPNNMSPA-ANGRSPSPRD 246
           PG R+P+P     SP ++      SP+    RS SPRD
Sbjct: 38  PGERTPSPPSRDPSPYRSPGERTPSPSPRRDRSLSPRD 75

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 26/107 (24%), Positives = 28/107 (26%)
 Frame = +3

Query: 231 AIVFAVPGARATTICSWAHVIRAVSLHRTPAVLPWCXXXXXXXXXXXXXXXXXXXTPPRA 410
           A   A     ATT  S A      S   T A                            A
Sbjct: 228 ATTTAATTTAATT--SSATTAATTSSTTTAATTTAATTTAATTTAATTTAATTTAATTTA 285

Query: 411 AAVTGAPXXXXXXXXXXXXXXXVSGAPPRAATVTGAPPWAATVTGAP 551
           A  T A                 + A   AAT T A   AAT TG+P
Sbjct: 286 ATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTGSP 332

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/96 (20%), Positives = 25/96 (26%)
 Frame = +3

Query: 264 TTICSWAHVIRAVSLHRTPAVLPWCXXXXXXXXXXXXXXXXXXXTPPRAAAVTGAPXXXX 443
           TT  +      + +   T A                             AA T A     
Sbjct: 168 TTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTSS 227

Query: 444 XXXXXXXXXXXVSGAPPRAATVTGAPPWAATVTGAP 551
                       + A   AAT T A   AAT TG+P
Sbjct: 228 ATTAATTTAATTTAATTTAATTTAATTTAATTTGSP 263

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 362 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPS 255
           TPPG  +P P   S +P  ADSP   SP A    PS
Sbjct: 475 TPPGPATPGPVGASAAP-TADSPLTASPPATAPGPS 509

>TMSP8_RAT (P83748) Transmembrane serine protease 8 precursor (EC 3.4.21.-)|
           (Distal intestinal serine protease) (Transmembrane
           serine protease 1) (TMSP-1)
          Length = 304

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 200 VMHFHWVHDGCHCLRRPWGSGYDHLQLG 283
           ++H  WV    HC RRP  S + H+++G
Sbjct: 61  LIHEVWVLTAAHCFRRPLNSSFYHVKVG 88

>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin)
          Length = 1004

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSP-SPRDGEDN 234
           PPG   P PR    SPM+A  P   +PA + R P  P D +D+
Sbjct: 250 PPGENDPEPRYLVHSPMRAPRP-FAAPALSQRWPLPPGDSKDS 291

>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein|
           12) (Small proline-rich-like epidermal differentiation
           complex protein 1A)
          Length = 110

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 299 CQPSSDSCCSPLVQGFCCQEGWG 367
           C PSS SCC P   G CC  G G
Sbjct: 48  CGPSSGSCCGP-SSGGCCSSGGG 69

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 347 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGN 228
           RSP+P   SRSP +  SP         RS SP D  D  N
Sbjct: 279 RSPSPPRGSRSPSEKGSPR------RSRSASPMDNGDGDN 312

>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 550 GAPVTVAAQGGAPVTVAALGGAP 482
           GAP    A+GGAP    A GGAP
Sbjct: 89  GAPAPAPAEGGAPAPAPAEGGAP 111



 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 550 GAPVTVAAQGGAPVTVAALGGAP 482
           GAP    A+GGAP    A GGAP
Sbjct: 79  GAPAPAPAEGGAPAPAPAEGGAP 101

>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2|
          Length = 891

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 246
           PP    P P ++ +SP+   +P++ SPA    SP  +D
Sbjct: 73  PPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPGKQD 110

>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 362 TPPGSRSPAPREN---SRSPMKADSPNNMSPAANGRSPS 255
           +P G++SPA  ++   ++SP +A SP    P A  +SP+
Sbjct: 696 SPAGAKSPAEAKSPVVAKSPAEAKSPAEAKPPAEAKSPA 734

>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)|
          Length = 162

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 296 GCQPSSDSCCSPLVQGFCC 352
           GC+ +S  CC P+ QG CC
Sbjct: 104 GCKCTSCQCCKPVQQGCCC 122

>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein|
           11)
          Length = 110

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 299 CQPSSDSCCSPLVQGFCCQEGWG 367
           C PSS SCC P   G CC  G G
Sbjct: 48  CGPSSGSCCGP-SSGGCCSSGAG 69

>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2|
          Length = 880

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 246
           PP    P P ++ +SP+   +P++ SPA    SP  +D
Sbjct: 73  PPVMPLPLPDDSGQSPIVRPAPSSHSPAKREESPGKQD 110

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 347 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 222
           RS +PR  SRSP  + S +     +  RSP  RD  D+ + R
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRR 156

>CUT1_CAEEL (Q03755) Cuticlin-1 precursor|
          Length = 424

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 577 PQGGMKGAQGAPVTVAAQGGAPVTVAALGGA 485
           PQ G++  Q APV  AA   APV  AA   A
Sbjct: 293 PQAGVEEVQAAPVAAAAPVAAPVAAAAAAPA 323

>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/51 (41%), Positives = 21/51 (41%)
 Frame = +3

Query: 399 PPRAAAVTGAPXXXXXXXXXXXXXXXVSGAPPRAATVTGAPPWAATVTGAP 551
           PPR A V G P               V GA  R ATVT   P   TV GAP
Sbjct: 308 PPRGALVRGTP---------------VRGAITRGATVTRGVPPPPTVRGAP 343

>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKAD-SPNNMSPAANGRSPSPRDG 243
           PPG ++      +RSPM  + +PN MSP + GR P P  G
Sbjct: 121 PPGQQNAF----NRSPMMPNGTPNMMSPPSMGRVPGPSPG 156

>SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 276

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 350 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGED 237
           S +P   ENSRS    +SPN+ + +ANG + +P+ G +
Sbjct: 118 SFTPPSNENSRS----NSPNSSNSSANGDAAAPKGGNN 151

>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 384 QGEGPEPHPSWQQKPCTKGEQQESDEG*QP**HEPSCKWS*PEPQGRRRQWQP 226
           Q +GP PHP   ++P  +G  Q   +G  P    P  K   P PQG  +  +P
Sbjct: 88  QSQGPPPHPGKPERPPPQGGNQ--SQGTPP----PPGKPERPPPQGGNQSHRP 134

>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10|
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114)
          Length = 987

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 510 TGAPPWAATVTGAP*APFIPPW 575
           T AP  AA   GAP AP++P W
Sbjct: 879 TTAPAAAAAAAGAPAAPYVPKW 900

>KINH_STRPU (P35978) Kinesin heavy chain|
          Length = 1031

 Score = 25.4 bits (54), Expect(2) = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 359  PPGSRSPAPRENSRSPMKADSPN---NMSPAANGRSP 258
            PP   SP P  ++ S  K+ +PN   NM   AN R P
Sbjct: 954  PPSHGSPEPISHNNSFEKSLNPNDAENMEKKANKRLP 990



 Score = 22.3 bits (46), Expect(2) = 8.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 571  GGMKGAQGAPVTVAAQGGAPVTVAALGGAPE 479
            GG  G +G   +    GG+PV      G+PE
Sbjct: 931  GGSTGIRGGGYSGIRGGGSPVIRPPSHGSPE 961

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 249
           PP    P P    RSP         SP    RSPSPR
Sbjct: 577 PPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPR 613

>RACD_STRTR (P29079) Aspartate racemase (EC 5.1.1.13)|
          Length = 243

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 150 VHHLVRVESRSNSSYSYKTLQNLEQRLACTSLILSCT 40
           ++H ++     N    Y+ L+   +RL C  +IL CT
Sbjct: 162 IYHEIKESDHLNQELYYEILEEAVERLNCEKVILGCT 198

>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 574  QGGMKGAQGAPVTVAAQGGAPVTVAALGGAP 482
            QGG  G +GAP+   A GG P   A  GG P
Sbjct: 1015 QGGAPGGRGAPMGRGAPGGGP---AGAGGRP 1042

>SSPA_STAAN (Q7A6A6) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 342

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 225
           P    +P    N  +P   D+PNN     N  +P+  D  DNG++
Sbjct: 289 PNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 333

>SSPA_STAAM (Q99V45) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 342

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 359 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 225
           P    +P    N  +P   D+PNN     N  +P+  D  DNG++
Sbjct: 289 PNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,292,449
Number of Sequences: 219361
Number of extensions: 1332421
Number of successful extensions: 5779
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5729
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)