ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue 387 e-104
2gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 56 5e-05
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
4dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
5dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
6dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
7dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
8dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 5e-05
9dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 9... 56 5e-05
10dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 44 0.20
11gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 42 0.80
12gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance... 42 0.80
13gb|AC146297.3| Mus musculus BAC clone RP23-260F15 from chromosom... 40 3.2
14gb|AC115355.3| Mus musculus BAC clone RP23-14J16 from 9, complet... 40 3.2
15gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 40 3.2
16gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, comple... 40 3.2
17gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequ... 40 3.2
18gb|AY103537.1| Zea mays PCO098403 mRNA sequence 40 3.2
19emb|AL807382.8| Mouse DNA sequence from clone RP23-434B7 on chro... 40 3.2 
>emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue
          Length = 2682

 Score =  387 bits (195), Expect = e-104
 Identities = 211/216 (97%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 28   aaactaggtacagtagtacattacacggnacaaaaccccccgtatcacgatcgatgatta 87
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2639 aaactaggtacagtagtacattacacgg-acaaaaccccccgtatcacgatcgatgatta 2581

                                                                        
Query: 88   atcgtcttccgcgcggtaaaaatggacgtccctcaaaaccatcacatttccagnccaaca 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2580 atcgtcttccgcgcggtaaaaatggacgtccctcaaaaccatcacatttccagtccaaca 2521

                                                                        
Query: 148  tttctttctaatgaaatgaaagctaaatgggcganatgagcaactacagctcgtccttgt 207
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2520 tttctttctaatgaaatgaaagctaaatgggcgatatgagcaactacagctcgtccttgt 2461

                                                
Query: 208  cgtactgctcgtgttccggctcctacgcctnctgct 243
            |||||||||||||||||||||||| ||||| |||||
Sbjct: 2460 cgtactgctcgtgttccggctcctccgcctcctgct 2425
to top
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
            sequence
          Length = 143507

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 105  aaaaatggacgtccctcaaaaccatcacattt 136
            ||||||||||||||||| ||||||||||||||
Sbjct: 9409 aaaaatggacgtccctcgaaaccatcacattt 9440
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 105      aaaaatggacgtccctcaaaaccatcacattt 136
                ||||||||||||||||| ||||||||||||||
Sbjct: 29928703 aaaaatggacgtccctcgaaaccatcacattt 29928734
to top
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0541C02
          Length = 150660

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 105  aaaaatggacgtccctcaaaaccatcacattt 136
            ||||||||||||||||| ||||||||||||||
Sbjct: 4851 aaaaatggacgtccctcgaaaccatcacattt 4882
to top
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 105    aaaaatggacgtccctcaaaaccatcacattt 136
              ||||||||||||||||| ||||||||||||||
Sbjct: 124216 aaaaatggacgtccctcgaaaccatcacattt 124247
to top
>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full
            insert sequence
          Length = 1944

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 105  aaaaatggacgtccctcaaaaccatcacattt 136
            ||||||||||||||||| ||||||||||||||
Sbjct: 1848 aaaaatggacgtccctcgaaaccatcacattt 1817
to top
>dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full
            insert sequence
          Length = 2708

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 105  aaaaatggacgtccctcaaaaccatcacattt 136
            ||||||||||||||||| ||||||||||||||
Sbjct: 2608 aaaaatggacgtccctcgaaaccatcacattt 2577
to top
>dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G02, full
            insert sequence
          Length = 2026

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 105  aaaaatggacgtccctcaaaaccatcacattt 136
            ||||||||||||||||| ||||||||||||||
Sbjct: 1930 aaaaatggacgtccctcgaaaccatcacattt 1899
to top
>dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 90, complete cds
          Length = 2731

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 105  aaaaatggacgtccctcaaaaccatcacattt 136
            ||||||||||||||||| ||||||||||||||
Sbjct: 2602 aaaaatggacgtccctcgaaaccatcacattt 2571
to top
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 147     atttctttctaatgaaatgaaa 168
               ||||||||||||||||||||||
Sbjct: 1261169 atttctttctaatgaaatgaaa 1261148
to top
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 155     ctaatgaaatgaaagctaaat 175
               |||||||||||||||||||||
Sbjct: 1421262 ctaatgaaatgaaagctaaat 1421242
to top
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    ttctaatgaaatgaaagctaa 173
              |||||||||||||||||||||
Sbjct: 112594 ttctaatgaaatgaaagctaa 112614
to top
>gb|AC146297.3| Mus musculus BAC clone RP23-260F15 from chromosome 9, complete sequence
          Length = 176549

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    aactaggtacagtagtacat 48
             ||||||||||||||||||||
Sbjct: 13547 aactaggtacagtagtacat 13528
to top
>gb|AC115355.3| Mus musculus BAC clone RP23-14J16 from 9, complete sequence
          Length = 179362

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     aactaggtacagtagtacat 48
              ||||||||||||||||||||
Sbjct: 148078 aactaggtacagtagtacat 148059
to top
>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aatgaaatgaaagctaaatg 176
             ||||||||||||||||||||
Sbjct: 60679 aatgaaatgaaagctaaatg 60698
to top
>gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, complete sequence
          Length = 161786

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   ctaatgaaatgaaagctaaatggg 178
             ||||||||| ||||||||||||||
Sbjct: 22238 ctaatgaaaagaaagctaaatggg 22261
to top
>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence
          Length = 174952

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   ctaatgaaatgaaagctaaa 174
             ||||||||||||||||||||
Sbjct: 56061 ctaatgaaatgaaagctaaa 56080
to top
>gb|AY103537.1| Zea mays PCO098403 mRNA sequence
          Length = 2806

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  actacagctcgtccttgtcg 209
            ||||||||||||||||||||
Sbjct: 2503 actacagctcgtccttgtcg 2484
to top
>emb|AL807382.8| Mouse DNA sequence from clone RP23-434B7 on chromosome 4, complete
             sequence
          Length = 190179

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aactaggtacagtagtacat 48
             ||||||||||||||||||||
Sbjct: 70193 aactaggtacagtagtacat 70212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,560,418
Number of Sequences: 3902068
Number of extensions: 1560418
Number of successful extensions: 28155
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28108
Number of HSP's gapped (non-prelim): 46
length of query: 245
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 223
effective length of database: 17,147,199,772
effective search space: 3823825549156
effective search space used: 3823825549156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top