Clone Information

BLAST Search Result

Clone Name	rbags25a16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL3_ORYSA (P35684) 60S ribosomal protein L3	317	2e-86
2	RL3B_ARATH (P22738) 60S ribosomal protein L3	297	2e-80
3	RL3A_ARATH (P17094) 60S ribosomal protein L3	292	7e-79
4	RL3_DROME (O16797) 60S ribosomal protein L3	234	1e-61
5	RL3_TOXCA (P49149) 60S ribosomal protein L3	228	1e-59
6	RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)	225	1e-58
7	RL3_ASHGO (Q759R7) 60S ribosomal protein L3	224	2e-58
8	RL3_RAT (P21531) 60S ribosomal protein L3 (L4)	223	3e-58
9	RL3_BOVIN (P39872) 60S ribosomal protein L3	223	3e-58
10	RL3_CAEEL (P50880) 60S ribosomal protein L3	223	3e-58
11	RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-bindi...	223	4e-58
12	RL3_DICDI (P34113) 60S ribosomal protein L3	221	2e-57
13	RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3	220	2e-57
14	RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like	219	5e-57
15	RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3	218	2e-56
16	RL3_KLULA (Q6CJR7) 60S ribosomal protein L3	217	3e-56
17	RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Mainten...	216	4e-56
18	RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like	216	6e-56
19	RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3	215	1e-55
20	RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)	215	1e-55
21	RL3B_SCHPO (P36584) 60S ribosomal protein L3-B	214	2e-55
22	RL3A_SCHPO (P40372) 60S ribosomal protein L3-A	214	2e-55
23	RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3	211	1e-54
24	RL3_NEUCR (P59671) 60S ribosomal protein L3	207	2e-53
25	RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3	199	4e-51
26	RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)	130	3e-30
27	RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P	123	4e-28
28	RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P	120	3e-27
29	RL3_PYRHO (O59418) 50S ribosomal protein L3P	120	3e-27
30	RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P	111	2e-24
31	RL3_METKA (Q8TY90) 50S ribosomal protein L3P	102	7e-22
32	RL3_METAC (Q8TRU7) 50S ribosomal protein L3P	102	7e-22
33	RL3_ARCFU (O28354) 50S ribosomal protein L3P	100	4e-21
34	RL3_METJA (P54014) 50S ribosomal protein L3P	100	6e-21
35	RL3_METMA (Q8PV50) 50S ribosomal protein L3P	99	8e-21
36	RL3_METTH (O26110) 50S ribosomal protein L3P	96	1e-19
37	RL3_METVA (Q9UWG2) 50S ribosomal protein L3P	95	2e-19
38	RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P	93	6e-19
39	RL3_THEVO (Q97BX7) 50S ribosomal protein L3P	89	1e-17
40	RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P	87	5e-17
41	RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P	84	4e-16
42	RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)	80	4e-15
43	RL3_NANEQ (P60458) 50S ribosomal protein L3P	77	6e-14
44	RL3_SULTO (Q975I1) 50S ribosomal protein L3P	75	2e-13
45	RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P	74	5e-13
46	RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P	72	2e-12
47	RL3_SULAC (Q4JB40) 50S ribosomal protein L3P	67	6e-11
48	RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase...	39	0.010
49	RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase...	39	0.010
50	RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase...	39	0.013
51	CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (...	31	2.7
52	IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)	31	3.6
53	IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)	31	3.6
54	RL3_MYCPU (Q98PY0) 50S ribosomal protein L3	31	3.6
55	PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)	30	4.6
56	ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor...	30	4.6
57	RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase...	30	4.6
58	HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG...	30	4.6
59	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	30	6.1
60	BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3...	30	6.1
61	PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)	30	7.9
62	RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase...	30	7.9
63	RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3	30	7.9

>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  317 bits (812), Expect = 2e-86
 Identities = 151/158 (95%), Positives = 154/158 (97%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK
Sbjct: 230 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 289

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            GQE+H A TEFDRTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVVTLRQSLLKQT
Sbjct: 290 SGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQT 349

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SRLALEEIKLKF+DTSSKFGHGRFQTTDEKQRF+GKLK
Sbjct: 350 SRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 387

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>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score =  297 bits (761), Expect = 2e-80
 Identities = 137/156 (87%), Positives = 148/156 (94%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY++GK
Sbjct: 230 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGK 289

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
           VGQETH A TE+DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLKQT
Sbjct: 290 VGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQT 349

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 169
           SRLA+EEIKLKF+D +S  GHGRFQT+ EK +FYG+
Sbjct: 350 SRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385

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>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score =  292 bits (747), Expect = 7e-79
 Identities = 135/157 (85%), Positives = 147/157 (93%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE+NKK+Y++GK
Sbjct: 230 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGK 289

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
           VG E H A TE+DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL QT
Sbjct: 290 VGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQT 349

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 166
           SRLALEEIKLKF+DT+S FGHGRFQT+ EK RFY ++
Sbjct: 350 SRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386

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>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score =  234 bits (598), Expect = 1e-61
 Identities = 113/165 (68%), Positives = 131/165 (79%), Gaps = 7/165 (4%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y+IG 
Sbjct: 229 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG- 287

Query: 456 VGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 298
            G  T D       ASTE+D T+K ITPMGGFPHYG V  D++MIKGCC+G KKR++TLR
Sbjct: 288 AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLR 347

Query: 297 QSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           +SLLK T R ALE+IKLKF+DTSSK GHGRFQT  +K  F G LK
Sbjct: 348 KSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392

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>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score =  228 bits (581), Expect = 1e-59
 Identities = 104/161 (64%), Positives = 129/161 (80%), Gaps = 3/161 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RW   +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++GK
Sbjct: 229 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGK 288

Query: 456 ---VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 286
                +   +  T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+
Sbjct: 289 SCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLI 348

Query: 285 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
            QT R A E+I LK++DTSSKFGHGRFQT  EK+ F GKLK
Sbjct: 349 VQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 389

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>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score =  225 bits (573), Expect = 1e-58
 Identities = 109/164 (66%), Positives = 133/164 (81%), Gaps = 6/164 (3%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG- 460
           GV +RW   +LPRKTHRGLRKVACIGAWHPARV++TVARAGQ GYHHRTE+NKK+YKIG 
Sbjct: 229 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQ 288

Query: 459 ----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 295
               K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+
Sbjct: 289 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRK 348

Query: 294 SLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 349 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score =  224 bits (571), Expect = 2e-58
 Identities = 109/158 (68%), Positives = 125/158 (79%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY+IGK
Sbjct: 229 GVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGK 288

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G E + A+TEFDRT+K ITPMGGF HYG V  D++M+KG   G +KRVVTLR+SL   T
Sbjct: 289 GGDEGN-AATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTST 347

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR ALEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 348 SRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385

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>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score =  223 bits (569), Expect = 3e-58
 Identities = 108/164 (65%), Positives = 133/164 (81%), Gaps = 6/164 (3%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG- 460
           GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG 
Sbjct: 229 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 288

Query: 459 ----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 295
               K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+
Sbjct: 289 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRK 348

Query: 294 SLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 349 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score =  223 bits (569), Expect = 3e-58
 Identities = 108/164 (65%), Positives = 133/164 (81%), Gaps = 6/164 (3%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG- 460
           GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG 
Sbjct: 229 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 288

Query: 459 ----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 295
               K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+
Sbjct: 289 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRK 348

Query: 294 SLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 349 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 392

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>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score =  223 bits (569), Expect = 3e-58
 Identities = 103/161 (63%), Positives = 131/161 (81%), Gaps = 3/161 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289

Query: 456 VG---QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 286
                +  ++ STEFD T+K ITPMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+
Sbjct: 290 SALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLI 349

Query: 285 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
            QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 350 TQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score =  223 bits (568), Expect = 4e-58
 Identities = 108/164 (65%), Positives = 133/164 (81%), Gaps = 6/164 (3%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG- 460
           GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG 
Sbjct: 229 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 288

Query: 459 ----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 295
               K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+
Sbjct: 289 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRK 348

Query: 294 SLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 349 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score =  221 bits (562), Expect = 2e-57
 Identities = 102/162 (62%), Positives = 126/162 (77%), Gaps = 4/162 (2%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y+IG+
Sbjct: 230 GVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQ 289

Query: 456 V----GQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 289
                G++     TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+
Sbjct: 290 AQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSI 349

Query: 288 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
             QT R ALE+I LKF+DTSSKFGHG  QT ++K +++G  K
Sbjct: 350 TTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKK 391

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>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score =  220 bits (561), Expect = 2e-57
 Identities = 102/161 (63%), Positives = 130/161 (80%), Gaps = 3/161 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289

Query: 456 VG---QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 286
                +  ++ STEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+
Sbjct: 290 SALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLI 349

Query: 285 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
            QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 350 TQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score =  219 bits (558), Expect = 5e-57
 Identities = 105/165 (63%), Positives = 126/165 (76%), Gaps = 7/165 (4%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y+IG+
Sbjct: 229 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR 288

Query: 456 VGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 298
            G    D       AST +D T+K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR
Sbjct: 289 -GLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 347

Query: 297 QSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           +SLL   SR ALE I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 348 KSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score =  218 bits (554), Expect = 2e-56
 Identities = 107/164 (65%), Positives = 132/164 (80%), Gaps = 6/164 (3%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG- 460
           GV +RW   +LPRKTHRGLRKVACIGA HPARV+++VARAGQ GYHHRTE+NKK+YKIG 
Sbjct: 229 GVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 288

Query: 459 ----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 295
               K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+
Sbjct: 289 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRK 348

Query: 294 SLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 349 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score =  217 bits (552), Expect = 3e-56
 Identities = 103/158 (65%), Positives = 124/158 (78%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GK
Sbjct: 228 GVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGK 287

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G +  +A+TEFDRT+K ITPMGGF HYG +  D++++KG   G +KRVVTLR+SL   T
Sbjct: 288 -GDDEANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNT 346

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR ALEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 347 SRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score =  216 bits (551), Expect = 4e-56
 Identities = 101/158 (63%), Positives = 123/158 (77%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GK
Sbjct: 227 GVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGK 286

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G +  + +T FDRT+K ITPMGGF HYG +K D++M+KGC  G +KR+VTLR+SL   T
Sbjct: 287 -GDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNT 345

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR ALEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 346 SRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 383

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>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score =  216 bits (549), Expect = 6e-56
 Identities = 103/165 (62%), Positives = 125/165 (75%), Gaps = 7/165 (4%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+++IG+
Sbjct: 229 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR 288

Query: 456 VGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 298
            G    D       AST +D T K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR
Sbjct: 289 -GPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLR 347

Query: 297 QSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           +SLL   SR A+E I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 348 KSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score =  215 bits (547), Expect = 1e-55
 Identities = 103/158 (65%), Positives = 123/158 (77%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y+IGK
Sbjct: 228 GVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGK 287

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G +  +A+T FDRT+K I PMGGF HYG+V  D++M+KG   G KKRVVTLR+SL   T
Sbjct: 288 -GDDEGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNT 346

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR A+EE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 347 SRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384

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>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score =  215 bits (547), Expect = 1e-55
 Identities = 102/158 (64%), Positives = 126/158 (79%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV++IGK
Sbjct: 229 GVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGK 288

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G +  +AST+FD ++K ITPMGGF  YG VK DY+M+KG   G KKRV+TLR++L  QT
Sbjct: 289 -GSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQT 347

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR A E+++LK++DTSSKFGHG FQT +EK+ F G LK
Sbjct: 348 SRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385

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>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score =  214 bits (544), Expect = 2e-55
 Identities = 102/158 (64%), Positives = 122/158 (77%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG 
Sbjct: 227 GTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG- 285

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G +  +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  T
Sbjct: 286 AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHT 345

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR ALE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 346 SRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score =  214 bits (544), Expect = 2e-55
 Identities = 102/158 (64%), Positives = 122/158 (77%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG 
Sbjct: 227 GTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG- 285

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G +  +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  T
Sbjct: 286 AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHT 345

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR ALE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 346 SRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score =  211 bits (538), Expect = 1e-54
 Identities = 101/158 (63%), Positives = 120/158 (75%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G 
Sbjct: 228 GVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGS 287

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G E+  A TEFDRT+K I PMGGF  YG VK D++++KG   G KKR+VT+R+SL   T
Sbjct: 288 AGDESSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDT 346

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR A E + LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 347 SRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score =  207 bits (528), Expect = 2e-53
 Identities = 98/158 (62%), Positives = 122/158 (77%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y+IGK
Sbjct: 229 GVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGK 288

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G     A+TE D T+K ITPMGGF  YG +  D++M+KG   G KKRV+TLR+S+   T
Sbjct: 289 -GDAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHT 347

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
           SR ALE+++LK++DTSS+FGHG FQT  EK++F G LK
Sbjct: 348 SRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385

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>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score =  199 bits (507), Expect = 4e-51
 Identities = 98/158 (62%), Positives = 122/158 (77%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G V R+GV + PRK+ +G+RKVACIGAWHP+RV Y++ARAGQ G+H RTE NK+VY I  
Sbjct: 224 GTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMI-- 281

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G  + +  TEFD TEK I+PMGGFPHYG V+ D++M+KG  VG +KRVVTLR+SLL+Q 
Sbjct: 282 -GNGSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR 340

Query: 276 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 163
              A EE+ +KFVDTSSK GHGRFQT+ EK+ FYG  K
Sbjct: 341 ---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARK 375

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>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)|
          Length = 130

 Score =  130 bits (328), Expect = 3e-30
 Identities = 61/104 (58%), Positives = 79/104 (75%), Gaps = 6/104 (5%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG- 460
           GV +RW   +LPRKTHRGLRKVACIGAWHPAR +++VARAGQ GYHHRTE+NKK+YKIG 
Sbjct: 27  GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQ 86

Query: 459 ----KVGQ-ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMI 343
               K G+   ++  T++D ++K I P+G F HYG V  D++M+
Sbjct: 87  GYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130

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>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P|
          Length = 365

 Score =  123 bits (309), Expect = 4e-28
 Identities = 59/138 (42%), Positives = 86/138 (62%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+
Sbjct: 232 GPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 291

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G+   D +TE      +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++    
Sbjct: 292 NGKLKLDENTEI-----EITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPK 346

Query: 276 SRLALEEIKLKFVDTSSK 223
            +  ++  ++ +V   SK
Sbjct: 347 KKPPVQRPQITYVSVESK 364

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>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P|
          Length = 361

 Score =  120 bits (302), Expect = 3e-27
 Identities = 58/138 (42%), Positives = 84/138 (60%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+
Sbjct: 229 GPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 288

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G+         D  E +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++    
Sbjct: 289 NGK------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPK 342

Query: 276 SRLALEEIKLKFVDTSSK 223
            +  ++  ++ +V   SK
Sbjct: 343 KKPPVQRPQITYVSVESK 360

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>RL3_PYRHO (O59418) 50S ribosomal protein L3P|
          Length = 362

 Score =  120 bits (301), Expect = 3e-27
 Identities = 58/138 (42%), Positives = 83/138 (60%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+
Sbjct: 230 GPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 289

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
            G+         D  E +ITP GGFPHYG+V+ D++MI G   G  KR++ +R ++    
Sbjct: 290 NGK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPK 343

Query: 276 SRLALEEIKLKFVDTSSK 223
            +  ++  ++ +V   SK
Sbjct: 344 KKPPVQRPQITYVSVESK 361

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>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P|
          Length = 346

 Score =  111 bits (278), Expect = 2e-24
 Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  I
Sbjct: 212 GPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAI 271

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G+ G+   D +      E +ITP GGFPHYG+V++D+LMI+G   G  KR++ +R ++  
Sbjct: 272 GENGKLVLDGN------EIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRP 325

Query: 282 QTSRLALEEIKLKFVDTSSK 223
              +  +E  ++ +V   SK
Sbjct: 326 PKKKPPVERPQITYVSRESK 345

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>RL3_METKA (Q8TY90) 50S ribosomal protein L3P|
          Length = 361

 Score =  102 bits (255), Expect = 7e-22
 Identities = 56/118 (47%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ KI
Sbjct: 215 GVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKI 274

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 289
           G+ G+E              +TP GGF +YGVV+ DY+MI G   GPKKR++ +R ++
Sbjct: 275 GEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318

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>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P|
          Length = 337

 Score =  102 bits (255), Expect = 7e-22
 Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ KI
Sbjct: 212 GPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKI 271

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  
Sbjct: 272 GSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI-- 315

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
           +  +  L E  + ++   SK G
Sbjct: 316 RAKKADLGEPNILYISRESKQG 337

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>RL3_ARCFU (O28354) 50S ribosomal protein L3P|
          Length = 331

 Score =  100 bits (249), Expect = 4e-21
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ KI
Sbjct: 205 GPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKI 264

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G+ G+E              ITP GGF HYGV++  Y+++ G   GP KR++ +R ++  
Sbjct: 265 GENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI-- 308

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
           +  +   + + + +V T+SK G
Sbjct: 309 RPPKAHFDGVNIVYVSTTSKQG 330

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>RL3_METJA (P54014) 50S ribosomal protein L3P|
          Length = 335

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ KI
Sbjct: 209 GQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKI 268

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G  G E              ITP GGF HYGV++ +Y+++KG   GP KR++ LR+++  
Sbjct: 269 GNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRP 314

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
           Q   + + EI   ++ T+SK G
Sbjct: 315 QEPLIKVPEI--TYISTTSKQG 334

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>RL3_METMA (Q8PV50) 50S ribosomal protein L3P|
          Length = 337

 Score = 99.4 bits (246), Expect = 8e-21
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ KI
Sbjct: 212 GPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKI 271

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  
Sbjct: 272 GSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI-- 315

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
           +  +  L E  + ++   SK G
Sbjct: 316 RAKKADLGEPNILYISRESKQG 337

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>RL3_METTH (O26110) 50S ribosomal protein L3P|
          Length = 337

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ KI
Sbjct: 209 GPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKI 268

Query: 462 GKVGQETHDASTEFDRTEKD-ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 286
           G             D +E D + P GGF  YG+V+ DY+MIKG   GP KR+V LR+++ 
Sbjct: 269 G-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI- 314

Query: 285 KQTSRLALEEIKLKFVDTSSKFG 217
            + +    E  ++ ++ T+SK G
Sbjct: 315 -RAAGKQEEAPQINYISTASKQG 336

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>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
 Frame = -3

Query: 636 GVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ K+
Sbjct: 208 GPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKL 267

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G  G E              ITP GGF +YG VK  Y+++KG   GP KR+V LR ++  
Sbjct: 268 GSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRP 313

Query: 282 QTSRLALEEIKLKFVDTSSKFGH 214
              +  L E+   ++   SK G+
Sbjct: 314 AEDKFGLPEV--TYISKESKQGN 334

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>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P|
          Length = 338

 Score = 93.2 bits (230), Expect = 6e-19
 Identities = 54/115 (46%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           GV+ R+GVT LPR  K  +G R+   IG   PA V +T  R GQ G+H RTE NK++ KI
Sbjct: 214 GVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKI 272

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 298
           G+ G E              ITP  GFPHYGVVK  Y++I+G   G +KR+V LR
Sbjct: 273 GENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313

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>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P|
          Length = 331

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 53/140 (37%), Positives = 73/140 (52%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N +V K  K
Sbjct: 205 GHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK 264

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
                 DA T        I   GGF HYG+VK DY+++ G   GP KR++ +R    ++ 
Sbjct: 265 ----GEDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKV 312

Query: 276 SRLALEEIKLKFVDTSSKFG 217
               ++ +KL ++   SK G
Sbjct: 313 P--DIDNVKLDYISLESKQG 330

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>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P|
          Length = 331

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 52/140 (37%), Positives = 72/140 (51%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N +V K G 
Sbjct: 205 GHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGN 264

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
                     E D     I   GGF HYG VK DY+++ G   G  KR++ +R    ++ 
Sbjct: 265 --------KEEVD----SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKV 312

Query: 276 SRLALEEIKLKFVDTSSKFG 217
               +EE+KL+++   SK G
Sbjct: 313 P--DIEEVKLEYISLESKQG 330

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>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P|
          Length = 334

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  I
Sbjct: 210 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDI 269

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
              G E               TP GGFP+YG V   Y ++KG   GP++R+V  R ++  
Sbjct: 270 ND-GDEP--------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRP 314

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
             S     E+  ++V T+S  G
Sbjct: 315 NESPRLDPEV--RYVSTASNQG 334

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>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)|
          Length = 337

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  I
Sbjct: 213 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDI 272

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 289
           G+  + T D               GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct: 273 GEGDEPTVD---------------GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315

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>RL3_NANEQ (P60458) 50S ribosomal protein L3P|
          Length = 321

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 44/129 (34%), Positives = 67/129 (51%)
 Frame = -3

Query: 636 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 457
           GV+ R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + KIG 
Sbjct: 202 GVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG- 260

Query: 456 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 277
                           + +   GG+  YG V    +++KG   GP+KR++ LR+++    
Sbjct: 261 ----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPR 304

Query: 276 SRLALEEIK 250
            +  +E I+
Sbjct: 305 KQEKVEGIE 313

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>RL3_SULTO (Q975I1) 50S ribosomal protein L3P|
          Length = 343

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           GVV R+GV  LPR  K  +G RKV   G    +  SY V + GQ GYH RTE NK++ KI
Sbjct: 220 GVVKRYGVVELPRWHKHRKGSRKVGARGPSF-STPSY-VPQPGQMGYHRRTEYNKRILKI 277

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
                E              I P GGF +YG+V+  YL+I+G  +G KKR + LR  +  
Sbjct: 278 SDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI-- 321

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
           + S +     K+ +V+  S+ G
Sbjct: 322 RPSWIPQSAPKITYVNLYSQQG 343

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>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P|
          Length = 344

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
 Frame = -3

Query: 636 GVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           GV+ RWGV  LPR  K  +G R++      H     +   +AGQ G+H RTE NK++  I
Sbjct: 216 GVIKRWGVKELPRWHKHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRILMI 273

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL- 286
              G +              +TP GGF  YGVV++ ++M+ G   G  KR + +R ++  
Sbjct: 274 DDDGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRP 319

Query: 285 -KQTSRLALEEIKLKFVDTSSKFG 217
            +   +L + + ++ ++  +SK G
Sbjct: 320 PEWYLKLGVRKPEITYISLASKQG 343

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>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P|
          Length = 351

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           GV+ R+ V  LPR  K  +G RK+   G       SYT  + GQ G+H RTE NK++ KI
Sbjct: 228 GVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKI 285

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 295
           G                 K+I P GGF  YG+V+  Y++++G  +G KKR + LR+
Sbjct: 286 GD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327

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>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P|
          Length = 342

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           GV+ R+ V   PR  K  +G RK+   G    +  SY V + GQ G+H RTE NK++ KI
Sbjct: 219 GVIKRYSVVEFPRWHKHRKGSRKIGARGP-SISTPSY-VPQPGQLGFHRRTEYNKRIIKI 276

Query: 462 GKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 283
           G                  +I P GG  +YG+VK  YL+I+G  +G +KR + LR  +  
Sbjct: 277 GD--------------NVNEINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRP 322

Query: 282 QTSRLALEEIKLKFVDTSSKFG 217
             S  +    K+ +V+ +S+ G
Sbjct: 323 SWSPESAP--KITYVNLASQQG 342

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>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +1

Query: 106 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 261
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 262 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 435
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +1

Query: 106 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 261
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 262 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 435
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
 Frame = +1

Query: 106 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 261
           + H+ F   +++T+++LR+S  L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 262 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 435
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (EC 4.6.1.1)|
           (ATP pyrophosphate-lyase) (Adenylyl cyclase) (Fragment)
          Length = 572

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 540 VSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ-----ETHDASTEFDRTEKDITPMGGFPH 376
           + Y     G + Y        +   +G  GQ     ET+ + +  +R++ D+TP+GG P 
Sbjct: 401 IRYDEVTKGYDYYGQTANTAARTESVGNGGQVLMTCETYHSLSTAERSQFDVTPLGGVPL 460

Query: 375 YGV 367
            GV
Sbjct: 461 RGV 463

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>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 151 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 300
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 151 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 300
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3|
          Length = 266

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 366 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 238
           VK + L++KG   GPKK  V +++   K  S+ A++ + L+ V
Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224

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>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1003

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 510 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 611
           +D+ E++ R P +++R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKESRRSGRATNHDSCDSCKEGG 66

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>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +1

Query: 205 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVRE 384
           E+  P     ++  E   L C  RG    G+      + WP+   +  +  G +H +   
Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729

Query: 385 ATHGSD 402
           A HG+D
Sbjct: 730 A-HGTD 734

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>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 366

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 127 KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 300
           ++ +++LR+S  L + ++P    ++     + P+L         D+ Q +T+G ++  + 
Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275

Query: 301 EGHHTLLWPDTASLDHQVVGLHHTIVR 381
           E    ++  D   LD Q      T++R
Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302

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>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 315

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 145 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 312
           LR  S L LA+ P L    L G ++T + KL  G    E D +   T GL + GLA  HH
Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183

Query: 313 TLLWP 327
            +L P
Sbjct: 184 EVLAP 188

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +2

Query: 239  TNLSLISSSARREVCFSRDWRRVTTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 418
            T  +++S+++R +     DWR    R F  +QH                         V 
Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431

Query: 419  SNSVEASWVSCPTLPILYTFLFISV 493
              S+  SW +C TL +++ F+ +++
Sbjct: 1432 DGSIFGSWKACQTLALMHDFVILTL 1456

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>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +1

Query: 118  RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 282
            R+  +T+L    + +LE A++   L G L++   +L   +DK+E++ L  ET+GL
Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567

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>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 510 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 611
           +D+ E++ R P ++ R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGG 66

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>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 338

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +1

Query: 106 VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 270
           +SH+ +     + +++LRS+   +  I  E    +       P++   + K   DF Q +
Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237

Query: 271 TRGLLQQGLAEGHHTLLWPDTASLDH 348
           + G + + +A+   TLL  D   LD+
Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263

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>RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3|
          Length = 403

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 636 GVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 463
           G + RWG+   P R+T +  R++  +G+   AR+       G  GY  RT    ++ +I
Sbjct: 237 GGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGYEWRTVSGLEIVRI 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,539,390
Number of Sequences: 219361
Number of extensions: 2033732
Number of successful extensions: 6025
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 5746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5964
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

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