ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25a15 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/60 (43%), Positives = 32/60 (53%) Frame = -3 Query: 563 SPSKYVPKWKREGDSSSQRTAVAAETDRWGXXXXXXXXXXXXXXXXRDARPLRQDAPPAR 384 +PSKY+PK+KR GDSSS + + + DRWG PLRQD PPAR Sbjct: 887 APSKYIPKFKRGGDSSSIPSG-SRDEDRWGSRG-----------------PLRQDGPPAR 928
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 36.6 bits (83), Expect = 0.059 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 2/78 (2%) Frame = +2 Query: 308 HRPAGGQGAPLDVXXXXXXXXXXXHHVQEGHLGGGDE--HHAEEELPGGEQGEDDHHAPT 481 HR G +P + HH G GG E HH+ E HHAP Sbjct: 242 HRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTE----------HHAPP 291 Query: 482 GLFQQQQPSSDCYCHPHV 535 QQQ P + HPH+ Sbjct: 292 SHPQQQHPHHQQHHHPHL 309
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -1 Query: 412 PSAKMPLLHVMSAPSARRLLP-PHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTP 236 P A + H +S + + P H LP+ +L H+++ G G L LHP P Sbjct: 2189 PPAPVHAQHALSFSNLHEMQPLAHGASTVLPSVSQLLSHHHIVSPGSGSAGSLSRLHPVP 2248 Query: 235 LP 230 +P Sbjct: 2249 VP 2250
>ICEN_PANAN (Q47879) Ice nucleation protein inaU| Length = 1034 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +3 Query: 279 PAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEGAD---ITCRRGILAEGTSITQ----RRS 437 P ++ + + ++ +AG+G T G RS L GAD + RG L G TQ R Sbjct: 868 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 927 Query: 438 FLAGSRA 458 LAG+ + Sbjct: 928 LLAGNNS 934
>ICEN_ENTAG (P16239) Ice nucleation protein| Length = 1258 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +3 Query: 279 PAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEGAD---ITCRRGILAEGTSITQ----RRS 437 P ++ + + ++ +AG+G T G RS L GAD + RG L G TQ R Sbjct: 1092 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 1151 Query: 438 FLAGSRA 458 LAG+ + Sbjct: 1152 LLAGNNS 1158
>ICEA_PANAN (P20469) Ice nucleation protein inaA| Length = 1322 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +3 Query: 279 PAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEGAD---ITCRRGILAEGTSITQ----RRS 437 P ++ + + ++ +AG+G T G RS L GAD + RG L G TQ R Sbjct: 1156 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 1215 Query: 438 FLAGSRA 458 LAG+ + Sbjct: 1216 LLAGNNS 1222
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/55 (29%), Positives = 19/55 (34%) Frame = +3 Query: 144 WKEDGKNLSQQAGRARRISGQEASAPPASGRGVG*RICRGPRSRTPAFSRCSWSS 308 W E+ S G G + GRG G CR P S C WS+ Sbjct: 1300 WGEESGAGSASRGPTSSQRGPHPDGKESQGRGRGLEACRSPNSPQLPLDSCIWST 1354
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 29.6 bits (65), Expect = 7.2 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 412 PSAKMPLLHVMSAPSARRLL----PPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILH 245 P PL +S S R + PP V P P + + L + P +LH Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAP-GVLH 383 Query: 244 PTPLPLAGGAEASWPEMRRALPAC 173 P P P+A P + RA P C Sbjct: 384 PAPPPIAPPLVQPSPPVARAAPVC 407
>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) (Verprolin homology domain-containing protein 1) Length = 559 Score = 29.6 bits (65), Expect = 7.2 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 412 PSAKMPLLHVMSAPSARRLL----PPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILH 245 P PL +S S R + PP V P P + + L + P +LH Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAP-GVLH 383 Query: 244 PTPLPLAGGAEASWPEMRRALPAC 173 P P P+A P + RA P C Sbjct: 384 PAPPPIAPPLVQPSPPVARAAPVC 407
>OVO_DROME (P51521) Protein ovo (Protein shaven baby)| Length = 1351 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 380 HHVQEGHLGGGDEHHAEEELPGGEQGEDDHHAPTGLFQQQQPSSDCY 520 H+VQ+ H G + H +++ P Q HA GL QQQP Y Sbjct: 863 HNVQQQH--GVQQQHVQQQPPPSYQ-----HATRGLMMQQQPQHGGY 902
>HEMA_RINDR (P41355) Hemagglutinin glycoprotein| Length = 609 Score = 29.6 bits (65), Expect = 7.2 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Frame = +3 Query: 300 WSSTVRLAGRGRLLTCGGRSLLAEGADITCRRGILAEGTSI-----TQRRSFLAGSRART 464 W+S A R L T +G IT RGI+A GT+I T+ + + R Sbjct: 327 WASP---ADRDTLATLSAIDPTLDGLYITTHRGIIAAGTAIWAVPVTRTDDQVKMGKCRL 383 Query: 465 II---TPPPVCFSSNSRPLTA 518 PPP C S++ PL A Sbjct: 384 EACRDRPPPFCNSTDWEPLEA 404
>HEMA_RINDK (P12567) Hemagglutinin glycoprotein| Length = 609 Score = 29.6 bits (65), Expect = 7.2 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Frame = +3 Query: 300 WSSTVRLAGRGRLLTCGGRSLLAEGADITCRRGILAEGTSI-----TQRRSFLAGSRART 464 W+S A R L T +G IT RGI+A GT+I T+ + + R Sbjct: 327 WASP---ADRDTLATLSAIDPTLDGLYITTHRGIIAAGTAIWAVPVTRTDDQVKMGKCRL 383 Query: 465 II---TPPPVCFSSNSRPLTA 518 PPP C S++ PL A Sbjct: 384 EACRDRPPPFCNSTDWEPLEA 404
>MYB_XENLA (Q08759) Myb protein| Length = 624 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 388 HVMSAPSARRLLPPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTPLPLA 224 H++ P+ +R + R P P + Q GPL++LH TPL LA Sbjct: 433 HLLRTPAIKRSILNSTPRTPTPFKNALAAQ-------EFKHGPLKLLHHTPLHLA 480
>GNEFR_HUMAN (Q9UGK8) Guanine nucleotide exchange factor-related protein| (Deafness locus associated putative guanine nucleotide exchange factor) (DelGEF) Length = 458 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = +3 Query: 294 CSWSSTVRLAGRGRLLTCGGRSLLAEGADITCRRGILAEGTSITQRR--SFLAGSRARTI 467 C W T+ L G++L+CG S G RR ++ + + + + AG R Sbjct: 108 CGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRHAVA 167 Query: 468 ITPPPVCF 491 T + F Sbjct: 168 ATASGIVF 175 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,104,537 Number of Sequences: 219361 Number of extensions: 1603184 Number of successful extensions: 5115 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4866 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5104 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
