ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24l14 |
|---|---|
| Clone Library Name | barley_pub |
>AMPN_FELCA (P79171) Aminopeptidase N (EC 3.4.11.2) (fAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (CD13 antigen) Length = 966 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 337 IEEFERXNQDYDEGNIKQQVQXVLEAAKV-LEWLKEN 230 +E+F++ N D G+ + ++ LE K L+W+KEN Sbjct: 918 LEQFKKNNMDTGFGSATRALEQALEKTKANLKWVKEN 954
>VPS39_MOUSE (Q8R5L3) Vam6/Vps39-like protein (Vps39 protein)| Length = 886 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = +1 Query: 67 LHVNETSLL-----CVL*TEQTLPVCKTKVGQREFARLPS 171 L V E +L C++ E+ VCK K+G FAR P+ Sbjct: 830 LRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPN 869
>VPS39_HUMAN (Q96JC1) Vam6/Vps39-like protein (hVam6p)| Length = 886 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = +1 Query: 67 LHVNETSLL-----CVL*TEQTLPVCKTKVGQREFARLPS 171 L V E +L C++ E+ VCK K+G FAR P+ Sbjct: 830 LRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPN 869
>PD2R_MOUSE (P70263) Prostaglandin D2 receptor (Prostanoid DP receptor) (PGD| receptor) Length = 357 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = -2 Query: 218 VHKKMSAALDALSVFKDGRRANSLWPTLVLQTGRVCSVYSTHKREVSFTCRC 63 +HK+ S ++ SV A + T+V G + ++Y H+R+ + RC Sbjct: 187 IHKERSFSVIGFSVLYSSLMALLVLATVVCNLGAMYNLYDMHRRQRHYPHRC 238
>GCY_ARBPU (P11528) Resact receptor precursor (Guanylate cyclase) (EC 4.6.1.2)| Length = 986 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/56 (21%), Positives = 27/56 (48%) Frame = -2 Query: 239 QGELHDRVHKKMSAALDALSVFKDGRRANSLWPTLVLQTGRVCSVYSTHKREVSFT 72 + E + + S L A+SV + + ++ T+ G +C++++ HK + T Sbjct: 553 ESETNSQGFSMKSMVLSAISVISNAEK-QQIFATIGTYRGTICAIHAVHKNHIDLT 607
>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 441 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 379 QYXTDQLVXXVETSIEEFERXNQDYDEGNIKQQVQXVLEAAKVLEWLKENCTIEY 215 Q +L+ E + FE N E +KQ++ +LEA ++LE+ T +Y Sbjct: 185 QESNKRLLLQNELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQY 239
>ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 1003 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 379 QYXTDQLVXXVETSIEEFERXNQDYDEGNIKQQVQXVLEAAKVLEWLKENCTIEY 215 Q +L+ E + FE N E +KQ++ +LEA ++LE+ T +Y Sbjct: 427 QESNKRLLLQNELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQY 481
>SYFA_CHLPN (Q9Z6R6) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 339 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/72 (23%), Positives = 31/72 (43%) Frame = +3 Query: 45 TYRANLTSTCKRDLSLVCAINRANPSRLQNQGRPERICTPAILEN*QSIERRAHFFMYSI 224 T+ N T+ + S V A L+ Q P ++ P + + I R+H + + Sbjct: 158 TFYLNATTVLRTHTSNVQA------RELKKQQPPIKVVAPGLCFRNEDISARSHVLFHQV 211 Query: 225 VQFSLSHSSTFA 260 F + H+ TF+ Sbjct: 212 EAFYVDHNVTFS 223
>ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (cAMP-dependent protein kinase ROCK-I) (CePKA) (Corneal epithelial Rho-associated-Ser/Thr kinase 1) (HEB Length = 1354 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 379 QYXTDQLVXXVETSIEEFERXNQDYDEGNIKQQVQXVLEAAKVLEWLKENCTIEY 215 Q +L+ E + FE N E +KQ++ +LEA ++LE+ T +Y Sbjct: 778 QESNKRLLLQNELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQY 832
>ROCK1_MOUSE (P70335) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) Length = 1354 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 379 QYXTDQLVXXVETSIEEFERXNQDYDEGNIKQQVQXVLEAAKVLEWLKENCTIEY 215 Q +L+ E + FE N E +KQ++ +LEA ++LE+ T +Y Sbjct: 778 QESNKRLLLQNELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQY 832
>ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (NY-REN-35 antigen) Length = 1354 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -3 Query: 379 QYXTDQLVXXVETSIEEFERXNQDYDEGNIKQQVQXVLEAAKVLEWLKENCTIEY 215 Q +L+ E + FE N E +KQ++ +LEA ++LE+ T +Y Sbjct: 778 QESNKRLLLQNELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQY 832
>SERC_BACSU (P80862) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| (Vegetative protein 234) (VEG234) Length = 359 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -3 Query: 253 VLEWLKENCTIEYIKK*ARRSMLCQFSRMAGVQILSGLPWFCRREGFALFIAHTRERSRL 74 VLEWLKEN +E +++ + Q+L + C E + H R+ SR Sbjct: 248 VLEWLKENGGVEAVEQRNEQK----------AQVL----YSCIDESNGFYKGHARKDSRS 293 Query: 73 HVDVKFAL 50 ++V F L Sbjct: 294 RMNVTFTL 301
>ROCK1_RAT (Q63644) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (p150 RhoA-binding kinase ROK beta) (Liver regeneration-related protein LRRG199) Length = 1369 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = -3 Query: 379 QYXTDQLVXXVETSIEEFERXNQDYDEGNIKQQVQXVLEAAKVLEWLKENCTIEY 215 Q +++ E + FE N E +KQ++ +LEA ++LE+ T +Y Sbjct: 778 QESNKRILLQSELKTQAFEADNLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQY 832
>AMPN_PIG (P15145) Aminopeptidase N (EC 3.4.11.2) (pAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (gp130) (CD13 antigen) Length = 962 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 337 IEEFERXNQDYDEGNIKQQVQXVLEAAKV-LEWLKEN 230 +E+F++ N D G+ + ++ LE K ++W+KEN Sbjct: 914 LEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKEN 950
>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)| (DNA-PK catalytic subunit) (DNA-PKcs) Length = 4134 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -2 Query: 230 LHDRVHKKMSAALDALSVFKDGRRANSLWPTLVLQTGRVC--SVYSTHKREVSFTCRCQV 57 LH K++ AAL S++++ R NSL V + V S+ TH E S Q Sbjct: 1064 LHPSAFKRLGAALAFNSIYREFREENSLVEQFVFEALVVFLESLALTHTDEKSLGTTQQC 1123 Query: 56 C 54 C Sbjct: 1124 C 1124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,781,366 Number of Sequences: 219361 Number of extensions: 781568 Number of successful extensions: 1887 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1856 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1887 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
