| Clone Name | rbags24l14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071B03, full insert sequence Length = 1915 Score = 137 bits (69), Expect = 3e-29 Identities = 121/139 (87%) Strand = Plus / Minus Query: 213 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272 |||||||| || ||||||||||||||||||| || |||||||| || ||||| |||||| Sbjct: 1625 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 1566 Query: 273 tnctgaacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactct 332 | ||||||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||| Sbjct: 1565 tcctgaacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactct 1506 Query: 333 tcaatggaggtctcaactt 351 || || ||| ||||||||| Sbjct: 1505 tctatagagttctcaactt 1487
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 2e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 278 aacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactcttcaat 337 |||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||||| || Sbjct: 11524232 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 11524173 Query: 338 ggaggtctcaactt 351 ||| ||||||||| Sbjct: 11524172 agagttctcaactt 11524159 Score = 73.8 bits (37), Expect = 4e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 213 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272 |||||||| || ||||||||||||||||||| || |||||||| || ||||| |||||| Sbjct: 11524556 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 11524497 Query: 273 tnctgaacctgc 284 | |||||||||| Sbjct: 11524496 tcctgaacctgc 11524485
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03 Length = 133019 Score = 77.8 bits (39), Expect = 2e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 278 aacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactcttcaat 337 |||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||||| || Sbjct: 93475 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 93416 Query: 338 ggaggtctcaactt 351 ||| ||||||||| Sbjct: 93415 agagttctcaactt 93402 Score = 73.8 bits (37), Expect = 4e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 213 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272 |||||||| || ||||||||||||||||||| || |||||||| || ||||| |||||| Sbjct: 93799 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 93740 Query: 273 tnctgaacctgc 284 | |||||||||| Sbjct: 93739 tcctgaacctgc 93728
>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0414E10 Length = 141760 Score = 77.8 bits (39), Expect = 2e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 278 aacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactcttcaat 337 |||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||||| || Sbjct: 2118 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 2059 Query: 338 ggaggtctcaactt 351 ||| ||||||||| Sbjct: 2058 agagttctcaactt 2045 Score = 73.8 bits (37), Expect = 4e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 213 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272 |||||||| || ||||||||||||||||||| || |||||||| || ||||| |||||| Sbjct: 2442 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 2383 Query: 273 tnctgaacctgc 284 | |||||||||| Sbjct: 2382 tcctgaacctgc 2371
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 cttgacatctacatgtaaac 78 |||||||||||||||||||| Sbjct: 112015 cttgacatctacatgtaaac 111996
>ref|NM_078745.2| Drosophila melanogaster echinoid CG12676-RA (ed), mRNA Length = 5686 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gttctccttgagccactcaa 249 |||||||||||||||||||| Sbjct: 1558 gttctccttgagccactcaa 1539
>gb|AC018478.4| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACH57F14, complete sequence Length = 103809 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cttatagagcaaacttgaca 65 |||||||||||||||||||| Sbjct: 86851 cttatagagcaaacttgaca 86832
>gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR44L03, complete sequence Length = 172190 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cttatagagcaaacttgaca 65 |||||||||||||||||||| Sbjct: 26641 cttatagagcaaacttgaca 26622
>gb|AY051656.1| Drosophila melanogaster LD11008 full length cDNA Length = 4188 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gttctccttgagccactcaa 249 |||||||||||||||||||| Sbjct: 531 gttctccttgagccactcaa 512
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccactcaagcacctttgcag 261 |||||||||||||||||||| Sbjct: 11051967 ccactcaagcacctttgcag 11051986
>gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone BACR48D02, complete sequence Length = 181728 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gttctccttgagccactcaa 249 |||||||||||||||||||| Sbjct: 146188 gttctccttgagccactcaa 146169
>gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed) mRNA, complete cds Length = 5201 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gttctccttgagccactcaa 249 |||||||||||||||||||| Sbjct: 1552 gttctccttgagccactcaa 1533
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1446H11 Length = 135488 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccactcaagcacctttgcag 261 |||||||||||||||||||| Sbjct: 22573 ccactcaagcacctttgcag 22592
>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete sequence Length = 290034 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gttctccttgagccactcaa 249 |||||||||||||||||||| Sbjct: 66948 gttctccttgagccactcaa 66929
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0560B10, complete sequence Length = 108295 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccactcaagcacctttgcag 261 |||||||||||||||||||| Sbjct: 10483 ccactcaagcacctttgcag 10502
>gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 of 5 of the complete sequence Length = 328561 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cttatagagcaaacttgaca 65 |||||||||||||||||||| Sbjct: 72970 cttatagagcaaacttgaca 72951
>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 262797 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gacctctctcttgtgtgtgctata 104 |||||||||||||| ||||||||| Sbjct: 224803 gacctctctcttgtatgtgctata 224780
>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete sequence Length = 163278 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ttgtttatgatatttgagct 20 |||||||||||||||||||| Sbjct: 135889 ttgtttatgatatttgagct 135870 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,657,751 Number of Sequences: 3902068 Number of extensions: 2657751 Number of successful extensions: 46101 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46054 Number of HSP's gapped (non-prelim): 47 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)