ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
3dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
5emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr... 40 5.1
6ref|NM_078745.2| Drosophila melanogaster echinoid CG12676-RA (ed... 40 5.1
7gb|AC018478.4| Drosophila melanogaster, chromosome 4, region 101... 40 5.1
8gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101... 40 5.1
9gb|AY051656.1| Drosophila melanogaster LD11008 full length cDNA 40 5.1
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
11gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, r... 40 5.1
12gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed) mRN... 40 5.1
13dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
14gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14... 40 5.1
15dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
16gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 o... 40 5.1
17emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal... 40 5.1
18gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromoso... 40 5.1

>dbj|AK099680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071B03, full
            insert sequence
          Length = 1915

 Score =  137 bits (69), Expect = 3e-29
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272
            |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 1625 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 1566

                                                                        
Query: 273  tnctgaacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactct 332
            | ||||||||||||||||||| ||||||| || ||||||||||||| | ||| |||||||
Sbjct: 1565 tcctgaacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactct 1506

                               
Query: 333  tcaatggaggtctcaactt 351
            || || ||| |||||||||
Sbjct: 1505 tctatagagttctcaactt 1487



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 278      aacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactcttcaat 337
                |||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||||| ||
Sbjct: 11524232 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 11524173

                              
Query: 338      ggaggtctcaactt 351
                 ||| |||||||||
Sbjct: 11524172 agagttctcaactt 11524159



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 213      atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272
                |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 11524556 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 11524497

                            
Query: 273      tnctgaacctgc 284
                | ||||||||||
Sbjct: 11524496 tcctgaacctgc 11524485



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>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417E03
          Length = 133019

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                         
Query: 278   aacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactcttcaat 337
             |||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||||| ||
Sbjct: 93475 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 93416

                           
Query: 338   ggaggtctcaactt 351
              ||| |||||||||
Sbjct: 93415 agagttctcaactt 93402



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 213   atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272
             |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 93799 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 93740

                         
Query: 273   tnctgaacctgc 284
             | ||||||||||
Sbjct: 93739 tcctgaacctgc 93728



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>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0414E10
          Length = 141760

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 278  aacctgctgcttgatgttcccctcgtcgtagtcttgattatngcgttcgaactcttcaat 337
            |||||||||||||||| ||||||| || ||||||||||||| | ||| ||||||||| ||
Sbjct: 2118 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 2059

                          
Query: 338  ggaggtctcaactt 351
             ||| |||||||||
Sbjct: 2058 agagttctcaactt 2045



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 272
            |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 2442 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 2383

                        
Query: 273  tnctgaacctgc 284
            | ||||||||||
Sbjct: 2382 tcctgaacctgc 2371



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>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
              HHEX gene for hematopoietically expressed homeobox, the 5'
              end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
              eukaryotic translation initiation factor 2 subunit 2
              (eIF-2-beta) pseudogene and four CpG islands, complete
              sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     cttgacatctacatgtaaac 78
              ||||||||||||||||||||
Sbjct: 112015 cttgacatctacatgtaaac 111996



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>ref|NM_078745.2| Drosophila melanogaster echinoid CG12676-RA (ed), mRNA
          Length = 5686

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  gttctccttgagccactcaa 249
            ||||||||||||||||||||
Sbjct: 1558 gttctccttgagccactcaa 1539



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>gb|AC018478.4| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
             BACH57F14, complete sequence
          Length = 103809

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    cttatagagcaaacttgaca 65
             ||||||||||||||||||||
Sbjct: 86851 cttatagagcaaacttgaca 86832



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>gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
             BACR44L03, complete sequence
          Length = 172190

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    cttatagagcaaacttgaca 65
             ||||||||||||||||||||
Sbjct: 26641 cttatagagcaaacttgaca 26622



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>gb|AY051656.1| Drosophila melanogaster LD11008 full length cDNA
          Length = 4188

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 gttctccttgagccactcaa 249
           ||||||||||||||||||||
Sbjct: 531 gttctccttgagccactcaa 512



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 242      ccactcaagcacctttgcag 261
                ||||||||||||||||||||
Sbjct: 11051967 ccactcaagcacctttgcag 11051986



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>gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
              BACR48D02, complete sequence
          Length = 181728

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    gttctccttgagccactcaa 249
              ||||||||||||||||||||
Sbjct: 146188 gttctccttgagccactcaa 146169



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>gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed) mRNA, complete cds
          Length = 5201

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  gttctccttgagccactcaa 249
            ||||||||||||||||||||
Sbjct: 1552 gttctccttgagccactcaa 1533



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>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ccactcaagcacctttgcag 261
             ||||||||||||||||||||
Sbjct: 22573 ccactcaagcacctttgcag 22592



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>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete
             sequence
          Length = 290034

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   gttctccttgagccactcaa 249
             ||||||||||||||||||||
Sbjct: 66948 gttctccttgagccactcaa 66929



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>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0560B10, complete sequence
          Length = 108295

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ccactcaagcacctttgcag 261
             ||||||||||||||||||||
Sbjct: 10483 ccactcaagcacctttgcag 10502



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>gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 of 5 of the complete
             sequence
          Length = 328561

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    cttatagagcaaacttgaca 65
             ||||||||||||||||||||
Sbjct: 72970 cttatagagcaaacttgaca 72951



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>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     gacctctctcttgtgtgtgctata 104
              |||||||||||||| |||||||||
Sbjct: 224803 gacctctctcttgtatgtgctata 224780



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>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete
              sequence
          Length = 163278

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ttgtttatgatatttgagct 20
              ||||||||||||||||||||
Sbjct: 135889 ttgtttatgatatttgagct 135870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,657,751
Number of Sequences: 3902068
Number of extensions: 2657751
Number of successful extensions: 46101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46054
Number of HSP's gapped (non-prelim): 47
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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