ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog 48 2e-05
2CJ022_HUMAN (Q96SZ5) Protein C10orf22 48 3e-05
3ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransfer... 34 0.35
4SOX8_CHICK (P57074) Transcription factor SOX-8 32 1.3
5BORL4_ARATH (Q9SUU1) Putative boron transporter-like protein 4 30 5.0
6ITA1_DROME (Q24247) Integrin alpha-PS1 precursor (Position-speci... 30 8.6

>CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog|
          Length = 256

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 662 NIHTFRAIT-PCALFDVLSPPYSAENGRDCSYFRKSPVKEPSVVLPSEIDSSEVVWLEE 489
           N+H   A+  P A  D+L+PPY  E+GRDC Y+R      P     S  D    VWL E
Sbjct: 177 NLHQIDAVDGPAAFLDILAPPYDPEDGRDCHYYRVVEPIRPKEASGSACDLPREVWLLE 235



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>CJ022_HUMAN (Q96SZ5) Protein C10orf22|
          Length = 270

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 662 NIHTFRAIT-PCALFDVLSPPYSAENGRDCSYFRKSPVKEPSVVLPSEIDSSEVVWLEE 489
           N+H   A+  P A  D+L+PPY  ++GRDC Y+R      P     S  D    VWL E
Sbjct: 191 NLHQIDAVEGPAAFLDILAPPYDPDDGRDCHYYRVLEPVRPKEASSSACDLPREVWLLE 249



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>ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 453

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 461 SPLEADGPPIP-PTRLPQSYLFHSAKQQMAPSLVTSGSMNSLSHSQRNKVEKGRQRV 628
           +P+    PP+P P++ P      + K  +AP L  +G+   L    R K+ + RQR+
Sbjct: 178 APIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLADAGAGKGLRSEHREKMNRMRQRI 234



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>SOX8_CHICK (P57074) Transcription factor SOX-8|
          Length = 470

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 479 GPPIPPTRLPQSYLFHSAKQQMAPSLVTSGSMNSLSHSQRNKVEKGRQRV 628
           GPP PPT  P++ L H +KQ+             L H  R  VE GRQ +
Sbjct: 232 GPPTPPTT-PKTDLHHGSKQE-------------LKHEGRRLVESGRQNI 267



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>BORL4_ARATH (Q9SUU1) Putative boron transporter-like protein 4|
          Length = 710

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
 Frame = -1

Query: 364 LVSVVCGLV---EQVSSRQPASSLW--FTLYTHHLLWVNE--ETIETIFIVPARYWSNAA 206
           L SV+ GL+     V    P S LW  FT      L  N+  E ++ +FI P R +    
Sbjct: 503 LQSVLVGLLILAVPVLRMIPTSVLWGYFTYMAVDSLPGNQFWERLQLLFITPGRRFKVLE 562

Query: 205 GL*CTHVALLSDEGLGVYTSFEIGEFLPC 119
           GL  + V ++  + + ++T F++  FL C
Sbjct: 563 GLHASFVEIVPYKSIVMFTLFQLLYFLIC 591



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>ITA1_DROME (Q24247) Integrin alpha-PS1 precursor (Position-specific antigen 1|
            alpha chain) (Protein multiple edematous wings)
          Length = 1146

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +2

Query: 350  YN*YEAP-SGSSIHWQKWYQNL-TISLSQGLCTNL*QQQSPLE-ADGPPIPPTRLPQSYL 520
            Y+ Y  P SG  + +  + + + T+ +SQG C    +  +PL  A G     +R   +YL
Sbjct: 856  YSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPLNLASG-----SRENPAYL 910

Query: 521  FHSAKQQMAPSLVTSGSMNSLSHSQRNKVEKGRQRVH 631
               A+ +M PS        SL HSQR+      +  H
Sbjct: 911  SAPAQMRMFPSQSRHSFNKSLIHSQRSYYSSSHRDDH 947


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,172,145
Number of Sequences: 219361
Number of extensions: 2276038
Number of successful extensions: 6061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6059
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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