Clone Information

BLAST Search Result

Clone Name	rbags25a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099899.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	170	4e-39
2	gb\|AC108763.2\| Oryza sativa (japonica cultivar-group) chromosome...	111	3e-21
3	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
4	emb\|AL645817.1\| Human DNA sequence from clone RP1-2A2 on chromos...	46	0.16
5	emb\|Z84816.1\|HS2A2B Human DNA sequence from PAC 2A2 on chromosom...	46	0.16
6	gb\|BC054583.1\| Danio rerio casein kinase 1, delta like, mRNA (cD...	44	0.63
7	ref\|XM_662149.1\| Cryptosporidium hominis TU502 hypothetical prot...	44	0.63
8	emb\|AL033517.1\|HS279I9 Human DNA sequence from clone RP1-279I9 o...	44	0.63
9	ref\|XM_684352.1\| PREDICTED: Danio rerio similar to casein kinase...	44	0.63
10	emb\|BX897685.6\| Zebrafish DNA sequence from clone CH211-234H8, c...	44	0.63
11	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.63
12	ref\|NM_199583.1\| Danio rerio casein kinase 1, delta like (csnk1d...	44	0.63
13	dbj\|AP003571.4\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.63
14	gb\|AC121578.2\| Mus musculus BAC clone RP23-253I14 from 5, comple...	42	2.5
15	gb\|DQ221693.1\| Xiphophorus maculatus transposon Helitron Hel (He...	42	2.5
16	emb\|BX828126.1\|CNS0A2X6 Arabidopsis thaliana Full-length cDNA Co...	42	2.5
17	emb\|CT573095.2\| Pan troglodytes chromosome X BAC RP43-088F10, co...	42	2.5
18	gb\|AC132257.5\| Mus musculus BAC clone RP24-361A4 from 5, complet...	42	2.5
19	gb\|U97022.1\|U97022 Fervidobacterium islandicum DNA topoisomerase...	42	2.5
20	emb\|AL731712.6\| Mouse DNA sequence from clone RP23-100M24 on chr...	42	2.5
21	ref\|NM_021302.1\| Mus musculus serine/threonine kinase 32C (Stk32...	40	9.8
22	gb\|BC026457.1\| Mus musculus serine/threonine kinase 32C, mRNA (c...	40	9.8
23	ref\|XM_602405.2\| PREDICTED: Bos taurus similar to solute carrier...	40	9.8
24	gb\|AC135962.4\| Mus musculus BAC clone RP23-342H15 from chromosom...	40	9.8
25	gb\|BC047496.1\| Homo sapiens syntaxin 2, transcript variant 1, mR...	40	9.8
26	gb\|BC015792.1\| Homo sapiens serine/threonine kinase 32C, mRNA (c...	40	9.8
27	ref\|NM_173575.2\| Homo sapiens serine/threonine kinase 32C (STK32...	40	9.8
28	gb\|BC043267.1\| Homo sapiens ATG3 autophagy related 3 homolog (S....	40	9.8
29	gb\|AC160540.7\| Mus musculus chromosome 7, clone RP23-44O19, comp...	40	9.8
30	ref\|NM_194356.1\| Homo sapiens syntaxin 2 (STX2), transcript vari...	40	9.8
31	ref\|NM_001980.2\| Homo sapiens syntaxin 2 (STX2), transcript vari...	40	9.8
32	gb\|AY437775.1\| Cyprinus carpio cytochrome P4501B2 (CYP1B) mRNA, ...	40	9.8
33	gb\|AC129317.3\| Mus musculus BAC clone RP23-443L14 from chromosom...	40	9.8
34	gb\|AC164406.5\| Mus musculus chromosome 3, clone RP24-391L20, com...	40	9.8
35	emb\|CR925794.8\| Zebrafish DNA sequence from clone CH211-202A23 i...	40	9.8
36	emb\|AL603758.3\| Human DNA sequence from clone RP11-529O20 on chr...	40	9.8
37	emb\|AL392104.19\| Human DNA sequence from clone RP11-324E23 on ch...	40	9.8
38	emb\|AL137878.11\| Human DNA sequence from clone RP11-145J3 on chr...	40	9.8
39	gb\|AC120768.5\| Rattus norvegicus 7 BAC CH230-152B10 (Children's ...	40	9.8
40	gb\|BC045760.1\| Homo sapiens serine/threonine kinase 32C, mRNA (c...	40	9.8
41	emb\|CR759869.14\| Zebrafish DNA sequence from clone DKEY-238F11 i...	40	9.8
42	emb\|BX004972.12\| Zebrafish DNA sequence from clone CH211-166A6 i...	40	9.8
43	emb\|CR925715.4\| Zebrafish DNA sequence from clone CH211-212C11 i...	40	9.8
44	dbj\|AK123511.1\| Homo sapiens cDNA FLJ41517 fis, clone BRTHA2012129	40	9.8
45	emb\|CR613802.1\| full-length cDNA clone CS0DF015YK12 of Fetal bra...	40	9.8
46	emb\|CR595271.1\| full-length cDNA clone CS0DL006YN16 of B cells (...	40	9.8
47	gb\|AC092692.6\| Homo sapiens 3q BAC RP11-147G7 (Roswell Park Canc...	40	9.8
48	gb\|AY098866.1\| Homo sapiens PKE protein kinase mRNA, complete cds	40	9.8
49	gb\|AC156801.2\| Mus musculus BAC clone RP23-142F22 from chromosom...	40	9.8
50	dbj\|AK046439.1\| Mus musculus adult male corpora quadrigemina cDN...	40	9.8
51	gb\|AC158654.3\| Mus musculus 6 BAC RP24-375H22 (Roswell Park Canc...	40	9.8
52	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
53	gb\|AC155659.6\| Mus musculus 6 BAC RP24-68F17 (Roswell Park Cance...	40	9.8
54	gb\|AC151269.3\| Mus musculus BAC clone RP24-271C20 from chromosom...	40	9.8
55	dbj\|AB056389.1\| Macaca fascicularis brain cDNA, clone:QflA-12365...	40	9.8
56	gb\|AC073912.38\| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Can...	40	9.8
57	ref\|XM_344970.2\| PREDICTED: Rattus norvegicus serine/threonine k...	40	9.8
58	emb\|AL929215.18\| Mouse DNA sequence from clone RP23-8L8 on chrom...	40	9.8
59	dbj\|AB048942.2\| Cyprinus carpio CYP1B mRNA for cytochrome P450 1...	40	9.8
60	dbj\|AK098366.1\| Homo sapiens cDNA FLJ25500 fis, clone CBR01695	40	9.8
61	dbj\|AK057849.1\| Homo sapiens cDNA FLJ25120 fis, clone CBR06020	40	9.8
62	gb\|AY359527.1\| Punta Salinas virus strain Cal. Ar 888 RNA-depend...	40	9.8
63	emb\|AL732343.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	9.8
64	emb\|AL161669.5\|CNS01RHC Human chromosome 14 DNA sequence BAC R-7...	40	9.8
65	gb\|AF052181.1\|AF052181 Homo sapiens clone 24790 mRNA sequence	40	9.8
66	emb\|AL606651.3\|OSJN00092 Oryza sativa genomic DNA, chromosome 4,...	40	9.8
67	emb\|CT030727.4\| Mouse DNA sequence from clone RP23-273I12 on chr...	40	9.8
68	gb\|AC131779.4\| Mus musculus BAC clone RP24-336D11 from 8, comple...	40	9.8
69	gb\|AC139846.4\| Mus musculus BAC clone RP23-385F3 from 8, complet...	40	9.8
70	dbj\|AB041542.1\| Mus musculus brain cDNA, clone MNCb-1563, simila...	40	9.8

>dbj|AK099899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114B09, full
           insert sequence
          Length = 1693

 Score =  170 bits (86), Expect = 4e-39
 Identities = 185/218 (84%)
 Strand = Plus / Minus

                                                                       
Query: 472 ttttcatgcaaaacaaatttatctatcacccatacacactccaggatagtactgggatca 531
           |||||||||||||||||||||||| ||||||| ||||| ||||| | ||||| || ||||
Sbjct: 729 ttttcatgcaaaacaaatttatctttcacccaaacacattccagaaaagtacgggcatca 670

                                                                       
Query: 532 ttgctcgaggggtagtactctctgaaagcctgcactttatcaatactgatcttaacagcc 591
           ||||| ||||| ||||||||||||||||||||| ||  | ||||||| ||||||||||  
Sbjct: 669 ttgcttgagggatagtactctctgaaagcctgcgctccaccaatactaatcttaacagat 610

                                                                       
Query: 592 tgctttttatctgtaagatcagtaaccttgttgtagactgatacaacatcaagtaacatc 651
           |||||  ||||  ||||||||| | |||||||||| ||||| ||||||||||||| ||||
Sbjct: 609 tgcttcctatcaataagatcagaagccttgttgtaaactgagacaacatcaagtagcatc 550

                                                 
Query: 652 tgttgggtcaggactctcactcgtgcaagcaaagcaag 689
           |||||   |||  | ||||||| ||| |||||||||||
Sbjct: 549 tgttgaaccagagccctcactcttgctagcaaagcaag 512



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 142  actgcgatgaatgccactctcttcctcatatcaggcttgacat 184
            |||||||||||||| ||||||||| |  | |||||||||||||
Sbjct: 1203 actgcgatgaatgcaactctcttctttgtctcaggcttgacat 1161



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 142  actgcgatgaatgccactctcttcctcatatcaggcttgacatc 185
            ||||| |||||||| ||||||||| |  | ||||||||||||||
Sbjct: 1059 actgcaatgaatgcaactctcttctttgtctcaggcttgacatc 1016

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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBb0004A05, complete sequence
          Length = 157913

 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                          
Query: 472    ttttcatgcaaaacaaatttatctatcacccatacacactccaggatagtactgggatca 531
              |||||||||||||||||||||||| ||||||| ||||| ||||| | ||||| || ||||
Sbjct: 149497 ttttcatgcaaaacaaatttatctttcacccaaacacattccagaaaagtacgggcatca 149556

                                              
Query: 532    ttgctcgaggggtagtactctctgaaagcctg 563
              ||||| ||||| ||||||||||||||||||||
Sbjct: 149557 ttgcttgagggatagtactctctgaaagcctg 149588



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                          
Query: 572    caatactgatcttaacagcctgctttttatctgtaagatcagtaaccttgttgtagactg 631
              ||||||| ||||||||||  |||||  ||||  ||||||||| | |||||||||| ||||
Sbjct: 149761 caatactaatcttaacagattgcttcctatcaataagatcagaagccttgttgtaaactg 149820

                                    
Query: 632    atacaacatcaagtaacatctg 653
              | ||||||||||||| ||||||
Sbjct: 149821 agacaacatcaagtagcatctg 149842



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 142    actgcgatgaatgccactctcttcctcatatcaggcttgacat 184
              |||||||||||||| ||||||||| |  | |||||||||||||
Sbjct: 148381 actgcgatgaatgcaactctcttctttgtctcaggcttgacat 148423



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 142    actgcgatgaatgccactctcttcctcatatcaggcttgacatc 185
              ||||| |||||||| ||||||||| |  | ||||||||||||||
Sbjct: 148525 actgcaatgaatgcaactctcttctttgtctcaggcttgacatc 148568

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                            
Query: 472      ttttcatgcaaaacaaatttatctatcacccatacacactccaggatagtactgggatca 531
                |||||||||||||||||||||||| ||||||| ||||| ||||| | ||||| || ||||
Sbjct: 19215847 ttttcatgcaaaacaaatttatctttcacccaaacacattccagaaaagtacgggcatca 19215906

                                                
Query: 532      ttgctcgaggggtagtactctctgaaagcctg 563
                ||||| ||||| ||||||||||||||||||||
Sbjct: 19215907 ttgcttgagggatagtactctctgaaagcctg 19215938



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                            
Query: 572      caatactgatcttaacagcctgctttttatctgtaagatcagtaaccttgttgtagactg 631
                ||||||| ||||||||||  |||||  ||||  ||||||||| | |||||||||| ||||
Sbjct: 19216111 caatactaatcttaacagattgcttcctatcaataagatcagaagccttgttgtaaactg 19216170

                                      
Query: 632      atacaacatcaagtaacatctg 653
                | ||||||||||||| ||||||
Sbjct: 19216171 agacaacatcaagtagcatctg 19216192



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 142      actgcgatgaatgccactctcttcctcatatcaggcttgacat 184
                |||||||||||||| ||||||||| |  | |||||||||||||
Sbjct: 19214731 actgcgatgaatgcaactctcttctttgtctcaggcttgacat 19214773



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 142      actgcgatgaatgccactctcttcctcatatcaggcttgacatc 185
                ||||| |||||||| ||||||||| |  | ||||||||||||||
Sbjct: 19214875 actgcaatgaatgcaactctcttctttgtctcaggcttgacatc 19214918

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>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete
             sequence
          Length = 129249

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 444   tctggttttctgactgctatctt 466
             |||||||||||||||||||||||
Sbjct: 68448 tctggttttctgactgctatctt 68470

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>emb|Z84816.1|HS2A2B Human DNA sequence from PAC 2A2 on chromosome X contains ESTs
          Length = 96355

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 444   tctggttttctgactgctatctt 466
             |||||||||||||||||||||||
Sbjct: 27908 tctggttttctgactgctatctt 27886

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>gb|BC054583.1| Danio rerio casein kinase 1, delta like, mRNA (cDNA clone MGC:63971
           IMAGE:6792153), complete cds
          Length = 3581

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 tatcaggcttgacatctctgtg 191
           ||||||||||||||||||||||
Sbjct: 774 tatcaggcttgacatctctgtg 753

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>ref|XM_662149.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.60299)
            partial mRNA
          Length = 2781

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 431  tcagatcctcatctctggtttt 452
            ||||||||||||||||||||||
Sbjct: 1729 tcagatcctcatctctggtttt 1708

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>emb|AL033517.1|HS279I9 Human DNA sequence from clone RP1-279I9 on chromosome 6p24.1-25.3
             Contains part of the GMDS gene for GDP-mannose 4
             6-dehydratase, complete sequence
          Length = 111311

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 472   ttttcatgcaaaacaaatttat 493
             ||||||||||||||||||||||
Sbjct: 27123 ttttcatgcaaaacaaatttat 27144

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>ref|XM_684352.1| PREDICTED: Danio rerio similar to casein kinase 1, delta
           (LOC560954), mRNA
          Length = 3536

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 tatcaggcttgacatctctgtg 191
           ||||||||||||||||||||||
Sbjct: 768 tatcaggcttgacatctctgtg 747

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>emb|BX897685.6| Zebrafish DNA sequence from clone CH211-234H8, complete sequence
          Length = 179286

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 170    tatcaggcttgacatctctgtg 191
              ||||||||||||||||||||||
Sbjct: 108276 tatcaggcttgacatctctgtg 108255

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 676      gcaagcaaagcaagcacagcagtgca 701
                |||| |||||||||||||||||||||
Sbjct: 25655146 gcaatcaaagcaagcacagcagtgca 25655171

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>ref|NM_199583.1| Danio rerio casein kinase 1, delta like (csnk1dl), mRNA
          Length = 3581

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 tatcaggcttgacatctctgtg 191
           ||||||||||||||||||||||
Sbjct: 774 tatcaggcttgacatctctgtg 753

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>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0458E02
          Length = 154458

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 676   gcaagcaaagcaagcacagcagtgca 701
             |||| |||||||||||||||||||||
Sbjct: 78591 gcaatcaaagcaagcacagcagtgca 78616

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>gb|AC121578.2| Mus musculus BAC clone RP23-253I14 from 5, complete sequence
          Length = 125303

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 331  tgttgtttggctgggatgttt 351
            |||||||||||||||||||||
Sbjct: 7416 tgttgtttggctgggatgttt 7396

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>gb|DQ221693.1| Xiphophorus maculatus transposon Helitron Hel (Hel) gene, complete
            cds
          Length = 8451

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  tcacggtgacttttgttttcc 139
            |||||||||||||||||||||
Sbjct: 3104 tcacggtgacttttgttttcc 3084

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>emb|BX828126.1|CNS0A2X6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH55ZG03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1366

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 459  gctatctttgatcttttcatg 479
            |||||||||||||||||||||
Sbjct: 1315 gctatctttgatcttttcatg 1335

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>emb|CT573095.2| Pan troglodytes chromosome X BAC RP43-088F10, complete sequence
          Length = 148786

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 595   tttttatctgtaagatcagta 615
             |||||||||||||||||||||
Sbjct: 62746 tttttatctgtaagatcagta 62726

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>gb|AC132257.5| Mus musculus BAC clone RP24-361A4 from 5, complete sequence
          Length = 171729

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 331    tgttgtttggctgggatgttt 351
              |||||||||||||||||||||
Sbjct: 150773 tgttgtttggctgggatgttt 150753

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>gb|U97022.1|U97022 Fervidobacterium islandicum DNA topoisomerase I (topA) gene, complete
            cds
          Length = 3986

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 633  tacaacatcaagtaacatctg 653
            |||||||||||||||||||||
Sbjct: 3406 tacaacatcaagtaacatctg 3386

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>emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chromosome 2, complete
             sequence
          Length = 215428

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 256   tgcctcccactgtgaggatct 276
             |||||||||||||||||||||
Sbjct: 58081 tgcctcccactgtgaggatct 58101

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>ref|NM_021302.1| Mus musculus serine/threonine kinase 32C (Stk32c), mRNA
          Length = 2201

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 773 tcaggcttgacatctctgtg 754

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>gb|BC026457.1| Mus musculus serine/threonine kinase 32C, mRNA (cDNA clone
           MGC:31445 IMAGE:4481218), complete cds
          Length = 2184

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 778 tcaggcttgacatctctgtg 759

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>ref|XM_602405.2| PREDICTED: Bos taurus similar to solute carrier family 41, member 3
            isoform 4 (LOC524085), mRNA
          Length = 3556

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 680  gcaaagcaagcacagcagtg 699
            ||||||||||||||||||||
Sbjct: 3431 gcaaagcaagcacagcagtg 3450

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>gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosome 16, complete sequence
          Length = 202525

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    cacccatacacactccagga 517
              ||||||||||||||||||||
Sbjct: 109347 cacccatacacactccagga 109366

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>gb|BC047496.1| Homo sapiens syntaxin 2, transcript variant 1, mRNA (cDNA clone
            MGC:51014 IMAGE:5296500), complete cds
          Length = 3344

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   ctctgtggaatcatgtccac 74
            ||||||||||||||||||||
Sbjct: 2890 ctctgtggaatcatgtccac 2909

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>gb|BC015792.1| Homo sapiens serine/threonine kinase 32C, mRNA (cDNA clone
           IMAGE:4866941), partial cds
          Length = 1858

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 469 tcaggcttgacatctctgtg 450

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>ref|NM_173575.2| Homo sapiens serine/threonine kinase 32C (STK32C), mRNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 799 tcaggcttgacatctctgtg 780

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>gb|BC043267.1| Homo sapiens ATG3 autophagy related 3 homolog (S. cerevisiae), mRNA
           (cDNA clone IMAGE:5296971)
          Length = 2915

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 tcctcatctctggttttctg 455
           ||||||||||||||||||||
Sbjct: 680 tcctcatctctggttttctg 699

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>gb|AC160540.7| Mus musculus chromosome 7, clone RP23-44O19, complete sequence
          Length = 221807

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    cctcatctctggttttctga 456
              ||||||||||||||||||||
Sbjct: 209077 cctcatctctggttttctga 209096

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>ref|NM_194356.1| Homo sapiens syntaxin 2 (STX2), transcript variant 2, mRNA
          Length = 3469

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   ctctgtggaatcatgtccac 74
            ||||||||||||||||||||
Sbjct: 3015 ctctgtggaatcatgtccac 3034

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>ref|NM_001980.2| Homo sapiens syntaxin 2 (STX2), transcript variant 1, mRNA
          Length = 3343

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   ctctgtggaatcatgtccac 74
            ||||||||||||||||||||
Sbjct: 2889 ctctgtggaatcatgtccac 2908

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>gb|AY437775.1| Cyprinus carpio cytochrome P4501B2 (CYP1B) mRNA, complete cds
          Length = 3233

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  cccactgtgaggatctccag 280
            ||||||||||||||||||||
Sbjct: 2810 cccactgtgaggatctccag 2791

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>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tgcatattgttctttcagag 32
             ||||||||||||||||||||
Sbjct: 11863 tgcatattgttctttcagag 11844

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>gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, complete sequence
          Length = 134552

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   gttttccccactgcgatgaa 152
             ||||||||||||||||||||
Sbjct: 99903 gttttccccactgcgatgaa 99922

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>emb|CR925794.8| Zebrafish DNA sequence from clone CH211-202A23 in linkage group 13,
             complete sequence
          Length = 132763

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 587   cagcctgctttttatctgta 606
             ||||||||||||||||||||
Sbjct: 53456 cagcctgctttttatctgta 53437

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>emb|AL603758.3| Human DNA sequence from clone RP11-529O20 on chromosome X Contains an
             olfactory receptor, family 2, subfamily J, member 3
             (OR2J3) pseudogene, complete sequence
          Length = 50887

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gtgcttgcctcccactgtga 270
             ||||||||||||||||||||
Sbjct: 27901 gtgcttgcctcccactgtga 27882

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>emb|AL392104.19| Human DNA sequence from clone RP11-324E23 on chromosome 10 Contains the
              3' end of a novel gene (DKFZp761L0424) (KIAA1217), the 3'
              end of the gene for Rho-GTPase activating protein 10
              (ARHGAP10) and a CpG island, complete sequence
          Length = 166643

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    agcattctgttgtttggctg 343
              ||||||||||||||||||||
Sbjct: 132470 agcattctgttgtttggctg 132451

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>emb|AL137878.11| Human DNA sequence from clone RP11-145J3 on chromosome 13 Contains the
             3' end of the EPSTI1 gene for epithelial stromal
             interaction 1 (breast), a  novel gene and a pseudogene,
             complete sequence
          Length = 87358

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 678   aagcaaagcaagcacagcagtgca 701
             ||||||||||||||||| ||||||
Sbjct: 25467 aagcaaagcaagcacagaagtgca 25490

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>gb|AC120768.5| Rattus norvegicus 7 BAC CH230-152B10 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 221436

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    aataagagagcctggggtct 238
              ||||||||||||||||||||
Sbjct: 174248 aataagagagcctggggtct 174229

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>gb|BC045760.1| Homo sapiens serine/threonine kinase 32C, mRNA (cDNA clone
           MGC:48655 IMAGE:4831007), complete cds
          Length = 2028

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 688 tcaggcttgacatctctgtg 669

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>emb|CR759869.14| Zebrafish DNA sequence from clone DKEY-238F11 in linkage group 13,
              complete sequence
          Length = 284763

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 587    cagcctgctttttatctgta 606
              ||||||||||||||||||||
Sbjct: 198299 cagcctgctttttatctgta 198318

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>emb|BX004972.12| Zebrafish DNA sequence from clone CH211-166A6 in linkage group 8,
              complete sequence
          Length = 151374

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    ggcttcatctgattggtcag 316
              ||||||||||||||||||||
Sbjct: 141389 ggcttcatctgattggtcag 141408

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>emb|CR925715.4| Zebrafish DNA sequence from clone CH211-212C11 in linkage group 14,
             complete sequence
          Length = 132743

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 587   cagcctgctttttatctgta 606
             ||||||||||||||||||||
Sbjct: 53456 cagcctgctttttatctgta 53437

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>dbj|AK123511.1| Homo sapiens cDNA FLJ41517 fis, clone BRTHA2012129
          Length = 2762

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  tcctcatctctggttttctg 455
            ||||||||||||||||||||
Sbjct: 2065 tcctcatctctggttttctg 2084

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>emb|CR613802.1| full-length cDNA clone CS0DF015YK12 of Fetal brain of Homo sapiens
            (human)
          Length = 1660

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   ctctgtggaatcatgtccac 74
            ||||||||||||||||||||
Sbjct: 1223 ctctgtggaatcatgtccac 1242

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>emb|CR595271.1| full-length cDNA clone CS0DL006YN16 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1907

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 589 tcaggcttgacatctctgtg 570

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>gb|AC092692.6| Homo sapiens 3q BAC RP11-147G7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 60802

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   tcctcatctctggttttctg 455
             ||||||||||||||||||||
Sbjct: 30392 tcctcatctctggttttctg 30373

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>gb|AY098866.1| Homo sapiens PKE protein kinase mRNA, complete cds
          Length = 2143

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 799 tcaggcttgacatctctgtg 780

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>gb|AC156801.2| Mus musculus BAC clone RP23-142F22 from chromosome 9, complete sequence
          Length = 197974

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tgtccactctttgcttcttg 87
              ||||||||||||||||||||
Sbjct: 125960 tgtccactctttgcttcttg 125979

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>dbj|AK046439.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230385A21
           product:hypothetical serine/threonine protein kinase,
           full insert sequence
          Length = 2161

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 771 tcaggcttgacatctctgtg 752

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>gb|AC158654.3| Mus musculus 6 BAC RP24-375H22 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 190192

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    ctgctttttatctgtaagat 610
              ||||||||||||||||||||
Sbjct: 161491 ctgctttttatctgtaagat 161472

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 674      gtgcaagcaaagcaagcaca 693
                ||||||||||||||||||||
Sbjct: 35020144 gtgcaagcaaagcaagcaca 35020163

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>gb|AC155659.6| Mus musculus 6 BAC RP24-68F17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 195440

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 591   ctgctttttatctgtaagat 610
             ||||||||||||||||||||
Sbjct: 60124 ctgctttttatctgtaagat 60105

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>gb|AC151269.3| Mus musculus BAC clone RP24-271C20 from chromosome 17, complete
             sequence
          Length = 127948

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ttctgttgtttggctgggat 347
             ||||||||||||||||||||
Sbjct: 29761 ttctgttgtttggctgggat 29780

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>dbj|AB056389.1| Macaca fascicularis brain cDNA, clone:QflA-12365, similar to human
           serine/threonine kinase 32C(STK32C), mRNA, NM_173575.1
          Length = 2038

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 689 tcaggcttgacatctctgtg 670

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>gb|AC073912.38| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 211550

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ctctgtggaatcatgtccac 74
             ||||||||||||||||||||
Sbjct: 89581 ctctgtggaatcatgtccac 89562

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>ref|XM_344970.2| PREDICTED: Rattus norvegicus serine/threonine kinase 32C
           (predicted) (Stk32c_predicted), mRNA
          Length = 2138

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 772 tcaggcttgacatctctgtg 753

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>emb|AL929215.18| Mouse DNA sequence from clone RP23-8L8 on chromosome 2, complete sequence
          Length = 159804

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    ttctgttgtttggctgggat 347
              ||||||||||||||||||||
Sbjct: 138974 ttctgttgtttggctgggat 138993

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>dbj|AB048942.2| Cyprinus carpio CYP1B mRNA for cytochrome P450 1B, complete cds
          Length = 3400

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  cccactgtgaggatctccag 280
            ||||||||||||||||||||
Sbjct: 2798 cccactgtgaggatctccag 2779

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>dbj|AK098366.1| Homo sapiens cDNA FLJ25500 fis, clone CBR01695
          Length = 2150

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 636 tcaggcttgacatctctgtg 617

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>dbj|AK057849.1| Homo sapiens cDNA FLJ25120 fis, clone CBR06020
          Length = 1868

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 476 tcaggcttgacatctctgtg 457

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>gb|AY359527.1| Punta Salinas virus strain Cal. Ar 888 RNA-dependent RNA polymerase
           gene, partial cds
          Length = 442

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 83  tcttggcaactacggatgatgatg 106
           |||||||||||||| |||||||||
Sbjct: 270 tcttggcaactacgaatgatgatg 293

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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 674   gtgcaagcaaagcaagcaca 693
             ||||||||||||||||||||
Sbjct: 51887 gtgcaagcaaagcaagcaca 51906

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>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192462

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ggtgacttttgttttcccca 142
              ||||||||||||||||||||
Sbjct: 125342 ggtgacttttgttttcccca 125361

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>gb|AF052181.1|AF052181 Homo sapiens clone 24790 mRNA sequence
          Length = 1403

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   ctctgtggaatcatgtccac 74
            ||||||||||||||||||||
Sbjct: 1036 ctctgtggaatcatgtccac 1055

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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 674   gtgcaagcaaagcaagcaca 693
             ||||||||||||||||||||
Sbjct: 79194 gtgcaagcaaagcaagcaca 79213

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>emb|CT030727.4| Mouse DNA sequence from clone RP23-273I12 on chromosome 17, complete
              sequence
          Length = 230658

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ttctgttgtttggctgggat 347
              ||||||||||||||||||||
Sbjct: 210080 ttctgttgtttggctgggat 210061

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>gb|AC131779.4| Mus musculus BAC clone RP24-336D11 from 8, complete sequence
          Length = 171978

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gtgcatattgttctttcaga 31
             ||||||||||||||||||||
Sbjct: 40211 gtgcatattgttctttcaga 40230

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>gb|AC139846.4| Mus musculus BAC clone RP23-385F3 from 8, complete sequence
          Length = 191571

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tgttctttcagagttacaac 39
             ||||||||||||||||||||
Sbjct: 99338 tgttctttcagagttacaac 99357

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>dbj|AB041542.1| Mus musculus brain cDNA, clone MNCb-1563, similar to AJ250840
           serine/threonine protein kinase (Mus musculus)
          Length = 2201

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcaggcttgacatctctgtg 191
           ||||||||||||||||||||
Sbjct: 773 tcaggcttgacatctctgtg 754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,411,860
Number of Sequences: 3902068
Number of extensions: 7411860
Number of successful extensions: 140223
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140018
Number of HSP's gapped (non-prelim): 204
length of query: 713
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 690
effective length of database: 17,143,297,704
effective search space: 11828875415760
effective search space used: 11828875415760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result