ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue 850 0.0
2gb|AY103537.1| Zea mays PCO098403 mRNA sequence 565 e-158
3gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence 549 e-153
4gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence 549 e-153
5dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 517 e-143
6dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 517 e-143
7dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 509 e-141
8dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 9... 509 e-141
9gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence 492 e-136
10gb|BT016887.1| Zea mays clone Contig720 mRNA sequence 474 e-130
11gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 351 2e-93
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
13dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
14dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
15gb|AF544993.1| Xerophyta viscosa Grp94 mRNA, complete cds 96 2e-16
16ref|NM_118552.2| Arabidopsis thaliana SHD (SHEPHERD); ATP bindin... 80 1e-11
17ref|NM_202877.1| Arabidopsis thaliana SHD (SHEPHERD); ATP bindin... 80 1e-11
18emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BA... 80 1e-11
19emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BA... 80 1e-11
20emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ... 80 1e-11
21gb|AY039895.1| Arabidopsis thaliana AT4g24190/T22A6_20 mRNA, com... 80 1e-11
22gb|BT004527.1| Arabidopsis thaliana At4g24190/T22A6_20 gene, com... 80 1e-11
23dbj|AB064528.1| Arabidopsis thaliana SHD mRNA for SHEPHERD, comp... 80 1e-11
24gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC ... 80 1e-11
25dbj|AB064527.1| Arabidopsis thaliana SHD gene for SHEPHERD, comp... 80 1e-11
26gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete seq... 62 3e-06
27gb|DQ084238.1| Leishmania donovani chagasi clone LCPE01EX020024H... 50 0.011
28gb|DQ084237.1| Leishmania donovani chagasi clone LCPE01EX020050A... 50 0.011
29emb|X87770.2|LIHSP83GN Leishmania infantum hsp83-1 gene for heat... 50 0.011
30gb|AY103538.1| Zea mays PCO150589 mRNA sequence 48 0.043
31emb|CT573078.1| Medicago truncatula chromosome 5 clone mte1-4f8,... 48 0.043
32gb|AF135117.1|AF135117 Salmo salar heat shock protein hsp90 beta... 46 0.17
33gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRN... 46 0.17
34gb|AF384808.1| Cryptococcus neoformans var. grubii heat-shock pr... 44 0.66
35gb|AY118578.1| Drosophila melanogaster LD43460 full insert cDNA 44 0.66
36dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 44 0.66
37ref|NM_058091.3| Drosophila melanogaster Trap1 CG3152-RA (Trap1)... 44 0.66
38gb|AY122624.1| Dimastigella trypaniformis strain Ulm heat shock ... 44 0.66
39gb|AF115775.2|AF115775 Drosophila melanogaster Hsp90-related pro... 44 0.66
40gb|BT001316.1| Drosophila melanogaster AT15050 full insert cDNA 44 0.66
41gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence 42 2.6
42gb|AC153140.5| Mus musculus BAC clone RP23-340P19 from chromosom... 42 2.6
43gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 42 2.6
44emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, stra... 42 2.6
45gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance... 42 2.6
46gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 42 2.6
47gb|AY109427.1| Zea mays CL1264_2 mRNA sequence 42 2.6
48gb|M60499.1|HUMPROFILC Human profilaggrin mRNA, 5' end 42 2.6
49gb|AC163634.4| Mus musculus BAC clone RP23-152O2 from chromosome... 42 2.6
50gb|M73492.1|LEIHSP90 Leishmania donovani heat shock protein 90 m... 42 2.6
51gb|M92926.1|LEIHSP01 Leishmania amazonensis heat shock protein 8... 42 2.6

>emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue
          Length = 2682

 Score =  850 bits (429), Expect = 0.0
 Identities = 434/436 (99%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 2313

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 2253

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 2193

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 2133

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2132 cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggagctccatcc 2073

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 2013

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2012 gtcaatgccctccgtgtccagggccttcttccaccagtcggtcagctccttgaacgactc 1953

                            
Query: 741  cttgaggtccttgagc 756
            ||||||||||||||||
Sbjct: 1952 cttgaggtccttgagc 1937



 Score =  460 bits (232), Expect = e-126
 Identities = 241/243 (99%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                        
Query: 11   tgcacgctaattcna-ctagctagggtatcgtcattaaacaagaaactaggtacagtagt 69
            ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 tgcacgctaattccaactagctagggtatcgtcattaaacaagaaactaggtacagtagt 2623

                                                                        
Query: 70   acattacacggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggta 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 acattacacggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggta 2563

                                                                        
Query: 130  aaaatggacgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatg 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 aaaatggacgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatg 2503

                                                                        
Query: 190  aaagctaaatgggcgatatgagcaactacagctcgtccttgtcgtactgctcgtgttccg 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 aaagctaaatgggcgatatgagcaactacagctcgtccttgtcgtactgctcgtgttccg 2443

               
Query: 250  gct 252
            |||
Sbjct: 2442 gct 2440



to top

>gb|AY103537.1| Zea mays PCO098403 mRNA sequence
          Length = 2806

 Score =  565 bits (285), Expect = e-158
 Identities = 398/436 (91%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| |||||||||||||||||||||||||| |||||||||  ||||||||| |||||
Sbjct: 2403 cacggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgc 2344

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2343 gaactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccag 2284

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            ||||||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 2283 cctcgccgtctgcttcagctcctcgctctcattgtcctgggcgaccttgtcgcggagctc 2224

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2223 cttgatgatggggtgcctggggttgatctccagcaccctcttgccgcgcatgtacgcctg 2164

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            |||||||| ||||||||||||||| |||||||||||||||||||||||||  ||||| ||
Sbjct: 2163 cttgctcgagtccgacagggtctgcgcctgcatgatcttctccatgttggcgctccaccc 2104

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
             |||||||||||||| || || |||||||||| |||||||||||||||||||||||| ||
Sbjct: 2103 gtacttggaggtgacgacgacgcagggggtgtcgtgcagccggttgctgatcttcaccga 2044

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            ||| | |  |||  | |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 2043 gtccacgttctcgctctccagggccttcttccaccagtcagtcagctccttgaacgactc 1984

                            
Query: 741  cttgaggtccttgagc 756
            |||||| |||||||||
Sbjct: 1983 cttgagctccttgagc 1968



to top

>gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence
          Length = 1544

 Score =  549 bits (277), Expect = e-153
 Identities = 387/424 (91%)
 Strand = Plus / Minus

                                                                        
Query: 328  gcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgcaaagtcc 387
            |||||||||||||||||||||| |||||||||||||  ||||||||| ||||| || |||
Sbjct: 1226 gcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcgaactcc 1167

                                                                        
Query: 388  ttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagcctcgcc 447
            |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1166 ttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagcctcgcc 1107

                                                                        
Query: 448  gtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctccttgatg 507
            || ||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1106 gtgtgcttcagctcctcgctctcgttgtcctgggcgaccttgtcgcggagctccttgatg 1047

                                                                        
Query: 508  atggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgcttgctc 567
            |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1046 atggggtgcctggggttgatctcgagcaccctcttgccgcgcatgtacgcctgcttgctc 987

                                                                        
Query: 568  gcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatccatacttg 627
            | ||||||||||||||| |||||||||||||||||||||||||  ||||| || ||||||
Sbjct: 986  gagtccgacagggtctgcgcctgcatgatcttctccatgttggcgctccacccgtacttg 927

                                                                        
Query: 628  gaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagagtcaatg 687
            ||||||||||| || |||||||||| |||||||||||||||||||||||| ||||| | |
Sbjct: 926  gaggtgaccacgacgcagggggtgtcgtgcagccggttgctgatcttcaccgagtccacg 867

                                                                        
Query: 688  ccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactccttgagg 747
              |||  | |||||||||||||| |||||||| |||||||||||||||||||||||||| 
Sbjct: 866  ttctcgctctccagggccttcttccaccagtcagtcagctccttgaacgactccttgagc 807

                
Query: 748  tcct 751
            ||||
Sbjct: 806  tcct 803



to top

>gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence
          Length = 2511

 Score =  549 bits (277), Expect = e-153
 Identities = 396/436 (90%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| |||||||||||||||||||||||||| |||||||||  ||||||||| |||||
Sbjct: 2173 cacggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgc 2114

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             || ||||||||||| || ||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 2113 gaactccttggggtcggggagggtgaacccgctctccatcagggccgtctggtacaccag 2054

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2053 cctcgccgtctgcttcagctcctcgctctcgctgtcctgggcgaccttgtcgcggagctc 1994

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1993 cttgatgatggggtgcctggggttgatctccagcaccctcttgccgcgcatgtacgcctg 1934

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            |||||||| ||||||||| ||||| |||||||||||||||||||||||||  ||||| ||
Sbjct: 1933 cttgctcgagtccgacagcgtctgcgcctgcatgatcttctccatgttggcgctccaccc 1874

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
             |||||||||||||| || ||  ||||||||| |||||||||| |||||| |||||| ||
Sbjct: 1873 gtacttggaggtgacgacgacggagggggtgtcgtgcagccggctgctgaccttcaccga 1814

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            ||| | || |||  | |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 1813 gtccacgctctcgctctccagggccttcttccaccactccgtcagctccttgaacgactc 1754

                            
Query: 741  cttgaggtccttgagc 756
            ||||||||||||||||
Sbjct: 1753 cttgaggtccttgagc 1738



to top

>dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full
            insert sequence
          Length = 2708

 Score =  517 bits (261), Expect = e-143
 Identities = 392/436 (89%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 2417 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 2358

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 2357 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 2298

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            | ||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 2297 cttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttc 2238

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 2237 cttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctg 2178

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            |||||| || ||||| |||||||||| |||||||||||||||||||||||  ||||| ||
Sbjct: 2177 cttgctggcatccgagagggtctgtgactgcatgatcttctccatgttggcgctccaccc 2118

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
             |||||||| || |||||||| |||||||||| |  ||||||||||||||||||||| ||
Sbjct: 2117 gtacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccga 2058

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            ||| | || ||| ||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2057 gtccacgctctcggtgtcaagagccttcttccaccagtcggtcagctccttgaaggactc 1998

                            
Query: 741  cttgaggtccttgagc 756
            ||||||||||||||||
Sbjct: 1997 cttgaggtccttgagc 1982



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 129  aaaaatggacgtccctcaaaaccatcacattt 160
            ||||||||||||||||| ||||||||||||||
Sbjct: 2608 aaaaatggacgtccctcgaaaccatcacattt 2577



to top

>dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G02, full
            insert sequence
          Length = 2026

 Score =  517 bits (261), Expect = e-143
 Identities = 392/436 (89%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 1739 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 1680

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 1679 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 1620

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            | ||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 1619 cttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttc 1560

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1559 cttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctg 1500

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            |||||| || ||||| |||||||||| |||||||||||||||||||||||  ||||| ||
Sbjct: 1499 cttgctggcatccgagagggtctgtgactgcatgatcttctccatgttggcgctccaccc 1440

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
             |||||||| || |||||||| |||||||||| |  ||||||||||||||||||||| ||
Sbjct: 1439 gtacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccga 1380

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            ||| | || ||| ||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct: 1379 gtccacgctctcggtgtcaagagccttcttccaccagtcggtcagctccttgaaggactc 1320

                            
Query: 741  cttgaggtccttgagc 756
            ||||||||||||||||
Sbjct: 1319 cttgaggtccttgagc 1304



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 129  aaaaatggacgtccctcaaaaccatcacattt 160
            ||||||||||||||||| ||||||||||||||
Sbjct: 1930 aaaaatggacgtccctcgaaaccatcacattt 1899



to top

>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full
            insert sequence
          Length = 1944

 Score =  509 bits (257), Expect = e-141
 Identities = 391/436 (89%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 1657 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 1598

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 1597 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 1538

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            | ||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 1537 cttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttc 1478

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1477 cttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctg 1418

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            |||||| || ||||| |||||||||| |||||||||||||||| ||||||  ||||| ||
Sbjct: 1417 cttgctggcatccgagagggtctgtgactgcatgatcttctccgtgttggcgctccaccc 1358

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
             |||||||| || |||||||| |||||||||| |  ||||||||||||||||||||| ||
Sbjct: 1357 gtacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccga 1298

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            ||| | || ||| ||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct: 1297 gtccacgctctcggtgtcaagagccttcttccaccagtcggtcagctccttgaaggactc 1238

                            
Query: 741  cttgaggtccttgagc 756
            ||||||||||||||||
Sbjct: 1237 cttgaggtccttgagc 1222



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 129  aaaaatggacgtccctcaaaaccatcacattt 160
            ||||||||||||||||| ||||||||||||||
Sbjct: 1848 aaaaatggacgtccctcgaaaccatcacattt 1817



to top

>dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 90, complete cds
          Length = 2731

 Score =  509 bits (257), Expect = e-141
 Identities = 391/436 (89%)
 Strand = Plus / Minus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||  | ||
Sbjct: 2411 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctgaaggc 2352

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 2351 gaagtccttgggatcagggaggttgaagccgctctccatgagggccgtctggtacaccag 2292

                                                                        
Query: 441  cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
            | ||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 2291 cttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggagttc 2232

                                                                        
Query: 501  cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
            ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 2231 cttgatgatggggtgcctggggttgatctcgagtaccctcttgccgcgcatgtacgcctg 2172

                                                                        
Query: 561  cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
            |||||| || ||||| |||||||||| |||||||||||||||||||||||  ||||| ||
Sbjct: 2171 cttgctggcatccgagagggtctgtgactgcatgatcttctccatgttggcgctccaccc 2112

                                                                        
Query: 621  atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
             |||||||| || |||||||| |||||||||| |  ||||||||||||||||||||| ||
Sbjct: 2111 gtacttggatgtcaccaccacgcagggggtgtcgctcagccggttgctgatcttcaccga 2052

                                                                        
Query: 681  gtcaatgccctccgtgtccagggccttcttncaccagtcggtcagctccttgaacgactc 740
            ||| | || ||| ||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct: 2051 gtccacgctctcggtgtcaagagccttcttccaccagtcggtcagctccttgaaggactc 1992

                            
Query: 741  cttgaggtccttgagc 756
            ||||||||||||||||
Sbjct: 1991 cttgaggtccttgagc 1976



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 129  aaaaatggacgtccctcaaaaccatcacattt 160
            ||||||||||||||||| ||||||||||||||
Sbjct: 2602 aaaaatggacgtccctcgaaaccatcacattt 2571



to top

>gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence
          Length = 1546

 Score =  492 bits (248), Expect = e-136
 Identities = 329/356 (92%)
 Strand = Plus / Minus

                                                                        
Query: 328  gcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgcaaagtcc 387
            |||||||||||||||||||||| |||||||||||||  ||||||||| ||||| || |||
Sbjct: 1240 gcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcgaactcc 1181

                                                                        
Query: 388  ttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagcctcgcc 447
            |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1180 ttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagcctcgcc 1121

                                                                        
Query: 448  gtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctccttgatg 507
            || ||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1120 gtgtgcttcagctcctcgctctcgttgtcctgggcgaccttgtcgcggagctccttgatg 1061

                                                                        
Query: 508  atggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgcttgctc 567
            |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1060 atggggtgcctggggttgatctcgagcaccctcttgccgcgcatgtacgcctgcttgctc 1001

                                                                        
Query: 568  gcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatccatacttg 627
            | ||||||||||||||| |||||||||||||||||||||||||  ||||| || ||||||
Sbjct: 1000 gagtccgacagggtctgcgcctgcatgatcttctccatgttggcgctccacccgtacttg 941

                                                                    
Query: 628  gaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacagagtc 683
            ||||||||||| || |||||||||| |||||||||||||||||||||||| |||||
Sbjct: 940  gaggtgaccacgacgcagggggtgtcgtgcagccggttgctgatcttcaccgagtc 885



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                       
Query: 697 tccagggccttcttncaccagtcggtcagctccttgaacgactccttgaggtccttgagc 756
           |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 871 tccagggccttcttccaccagtcagtcagctccttgaacgactccttgagctccttgagc 812



to top

>gb|BT016887.1| Zea mays clone Contig720 mRNA sequence
          Length = 719

 Score =  474 bits (239), Expect = e-130
 Identities = 332/363 (91%)
 Strand = Plus / Plus

                                                                       
Query: 321 cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
           |||||| |||||||||||||||||||||||||| |||||||||  ||||||||| |||||
Sbjct: 338 cacggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgc 397

                                                                       
Query: 381 aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
            || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 398 gaactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccag 457

                                                                       
Query: 441 cctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggagctc 500
           ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 458 cctcgccgtctgcttcagctcctcgctctcgctgtcctgggcgaccttgtcgcggagctc 517

                                                                       
Query: 501 cttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctg 560
           ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 518 cttgatgatggggtgcctggggttgatctccaccaccctcttgccgcgcatgtacgcctg 577

                                                                       
Query: 561 cttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcc 620
           |||||||| ||||||||| ||||| |||||||||||||||||||||||||  ||||| ||
Sbjct: 578 cttgctcgagtccgacagcgtctgcgcctgcatgatcttctccatgttggcgctccaccc 637

                                                                       
Query: 621 atacttggaggtgaccaccacacagggggtgttgtgcagccggttgctgatcttcacaga 680
            |||||||||||||| || ||  ||||||||| |||||||||| |||||| |||||| ||
Sbjct: 638 gtacttggaggtgacgacgacggagggggtgtcgtgcagccggctgctgaccttcaccga 697

              
Query: 681 gtc 683
           |||
Sbjct: 698 gtc 700



to top

>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
             sequence
          Length = 143507

 Score =  351 bits (177), Expect = 2e-93
 Identities = 260/288 (90%)
 Strand = Plus / Plus

                                                                         
Query: 469   tcgctgtcctgggcgaccttgtcgcggagctccttgatgatggggtgccgggggttgatc 528
             ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 9854  tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 9913

                                                                         
Query: 529   tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 588
             || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| |
Sbjct: 9914  tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 9973

                                                                         
Query: 589   tgcatgatcttctccatgttggaactccatccatacttggaggtgaccaccacacagggg 648
             ||||||||||||||||||||||  ||||| || |||||||| || |||||||| ||||||
Sbjct: 9974  tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 10033

                                                                         
Query: 649   gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 708
             |||| |  ||||||||||||||||||||| ||||| | || ||| ||||| || ||||||
Sbjct: 10034 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 10093

                                                             
Query: 709   ttncaccagtcggtcagctccttgaacgactccttgaggtccttgagc 756
             || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10094 ttccaccagtcggtcagctccttgaaggactccttgaggtccttgagc 10141



 Score =  172 bits (87), Expect = 1e-39
 Identities = 132/147 (89%)
 Strand = Plus / Plus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 9600 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 9659

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 9660 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 9719

                                       
Query: 441  cctcgccgtctgcttcaggccctcgct 467
            | ||||||||||||||| || ||||||
Sbjct: 9720 cttcgccgtctgcttcaagctctcgct 9746



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 129  aaaaatggacgtccctcaaaaccatcacattt 160
            ||||||||||||||||| ||||||||||||||
Sbjct: 9409 aaaaatggacgtccctcgaaaccatcacattt 9440



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  351 bits (177), Expect = 2e-93
 Identities = 260/288 (90%)
 Strand = Plus / Plus

                                                                            
Query: 469      tcgctgtcctgggcgaccttgtcgcggagctccttgatgatggggtgccgggggttgatc 528
                ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 29929148 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 29929207

                                                                            
Query: 529      tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 588
                || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| |
Sbjct: 29929208 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 29929267

                                                                            
Query: 589      tgcatgatcttctccatgttggaactccatccatacttggaggtgaccaccacacagggg 648
                ||||||||||||||||||||||  ||||| || |||||||| || |||||||| ||||||
Sbjct: 29929268 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 29929327

                                                                            
Query: 649      gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 708
                |||| |  ||||||||||||||||||||| ||||| | || ||| ||||| || ||||||
Sbjct: 29929328 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 29929387

                                                                
Query: 709      ttncaccagtcggtcagctccttgaacgactccttgaggtccttgagc 756
                || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29929388 ttccaccagtcggtcagctccttgaaggactccttgaggtccttgagc 29929435



 Score =  172 bits (87), Expect = 1e-39
 Identities = 132/147 (89%)
 Strand = Plus / Plus

                                                                            
Query: 321      cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
                |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 29928894 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 29928953

                                                                            
Query: 381      aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
                 ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 29928954 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 29929013

                                           
Query: 441      cctcgccgtctgcttcaggccctcgct 467
                | ||||||||||||||| || ||||||
Sbjct: 29929014 cttcgccgtctgcttcaagctctcgct 29929040



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 129      aaaaatggacgtccctcaaaaccatcacattt 160
                ||||||||||||||||| ||||||||||||||
Sbjct: 29928703 aaaaatggacgtccctcgaaaccatcacattt 29928734



to top

>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0541C02
          Length = 150660

 Score =  351 bits (177), Expect = 2e-93
 Identities = 260/288 (90%)
 Strand = Plus / Plus

                                                                        
Query: 469  tcgctgtcctgggcgaccttgtcgcggagctccttgatgatggggtgccgggggttgatc 528
            ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 5296 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 5355

                                                                        
Query: 529  tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 588
            || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| |
Sbjct: 5356 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 5415

                                                                        
Query: 589  tgcatgatcttctccatgttggaactccatccatacttggaggtgaccaccacacagggg 648
            ||||||||||||||||||||||  ||||| || |||||||| || |||||||| ||||||
Sbjct: 5416 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 5475

                                                                        
Query: 649  gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 708
            |||| |  ||||||||||||||||||||| ||||| | || ||| ||||| || ||||||
Sbjct: 5476 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 5535

                                                            
Query: 709  ttncaccagtcggtcagctccttgaacgactccttgaggtccttgagc 756
            || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5536 ttccaccagtcggtcagctccttgaaggactccttgaggtccttgagc 5583



 Score =  172 bits (87), Expect = 1e-39
 Identities = 132/147 (89%)
 Strand = Plus / Plus

                                                                        
Query: 321  cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
            |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 5042 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 5101

                                                                        
Query: 381  aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
             ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 5102 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 5161

                                       
Query: 441  cctcgccgtctgcttcaggccctcgct 467
            | ||||||||||||||| || ||||||
Sbjct: 5162 cttcgccgtctgcttcaagctctcgct 5188



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 129  aaaaatggacgtccctcaaaaccatcacattt 160
            ||||||||||||||||| ||||||||||||||
Sbjct: 4851 aaaaatggacgtccctcgaaaccatcacattt 4882



to top

>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score =  351 bits (177), Expect = 2e-93
 Identities = 260/288 (90%)
 Strand = Plus / Plus

                                                                          
Query: 469    tcgctgtcctgggcgaccttgtcgcggagctccttgatgatggggtgccgggggttgatc 528
              ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 124661 tcgctgtcctgggcgaccttgtcacggagttccttgatgatggggtgcctggggttgatc 124720

                                                                          
Query: 529    tccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagggtctgtgcc 588
              || || |||||||||||||||||||||||||||||||| || ||||| |||||||||| |
Sbjct: 124721 tcgagtaccctcttgccgcgcatgtacgcctgcttgctggcatccgagagggtctgtgac 124780

                                                                          
Query: 589    tgcatgatcttctccatgttggaactccatccatacttggaggtgaccaccacacagggg 648
              ||||||||||||||||||||||  ||||| || |||||||| || |||||||| ||||||
Sbjct: 124781 tgcatgatcttctccatgttggcgctccacccgtacttggatgtcaccaccacgcagggg 124840

                                                                          
Query: 649    gtgttgtgcagccggttgctgatcttcacagagtcaatgccctccgtgtccagggccttc 708
              |||| |  ||||||||||||||||||||| ||||| | || ||| ||||| || ||||||
Sbjct: 124841 gtgtcgctcagccggttgctgatcttcaccgagtccacgctctcggtgtcaagagccttc 124900

                                                              
Query: 709    ttncaccagtcggtcagctccttgaacgactccttgaggtccttgagc 756
              || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 124901 ttccaccagtcggtcagctccttgaaggactccttgaggtccttgagc 124948



 Score =  172 bits (87), Expect = 1e-39
 Identities = 132/147 (89%)
 Strand = Plus / Plus

                                                                          
Query: 321    cacggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgc 380
              |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||
Sbjct: 124407 cacggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggc 124466

                                                                          
Query: 381    aaagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccag 440
               ||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 124467 gaagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccag 124526

                                         
Query: 441    cctcgccgtctgcttcaggccctcgct 467
              | ||||||||||||||| || ||||||
Sbjct: 124527 cttcgccgtctgcttcaagctctcgct 124553



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 129    aaaaatggacgtccctcaaaaccatcacattt 160
              ||||||||||||||||| ||||||||||||||
Sbjct: 124216 aaaaatggacgtccctcgaaaccatcacattt 124247



to top

>gb|AF544993.1| Xerophyta viscosa Grp94 mRNA, complete cds
          Length = 2947

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 520  gggttgatctccaggaccctcttgccgcgcatgtacgcctgcttgctcgcgtccgacagg 579
            ||||| ||||| || |||||||| ||||||||||| ||||||||||| || || || || 
Sbjct: 2135 gggttaatctcgagcaccctcttcccgcgcatgtatgcctgcttgctggcatcggaaaga 2076

                                                                        
Query: 580  gtctgtgcctgcatgatcttctccatgttggaactccatccatacttggaggtgaccacc 639
            ||||| | |||||| |||||||||||||| | |||||| ||||| || || ||||| || 
Sbjct: 2075 gtctgagactgcataatcttctccatgtttgcactccaaccatatttcgatgtgacaaca 2016

                                                        
Query: 640  acacagggggtgttgtgcagccggttgctgatcttcacagagtc 683
            || || || ||||| | || ||||||||| |||||||| |||||
Sbjct: 2015 acgcaaggagtgttatccaaccggttgctaatcttcacggagtc 1972



 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 724  agctccttgaacgactccttgaggtccttga 754
            ||||||||||| ||||||||||| |||||||
Sbjct: 1931 agctccttgaaggactccttgagatccttga 1901



to top

>ref|NM_118552.2| Arabidopsis thaliana SHD (SHEPHERD); ATP binding / unfolded protein
            binding AT4G24190 (SHD) transcript variant AT4G24190.1
            mRNA, complete cds
          Length = 2707

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 2207 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2148

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 2147 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 2088

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 2087 aacttgga 2080



to top

>ref|NM_202877.1| Arabidopsis thaliana SHD (SHEPHERD); ATP binding / unfolded protein
            binding AT4G24190 (SHD) transcript variant AT4G24190.2
            mRNA, complete cds
          Length = 2707

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 2207 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2148

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 2147 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 2088

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 2087 aacttgga 2080



to top

>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial
             sequence (ESSA project)
          Length = 77567

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                         
Query: 502   ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
             |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 76717 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 76776

                                                                         
Query: 562   ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
             ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 76777 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 76836

                     
Query: 622   tacttgga 629
              |||||||
Sbjct: 76837 aacttgga 76844



to top

>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project)
          Length = 108459

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 3355 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 3414

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 3415 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 3474

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 3475 aacttgga 3482



to top

>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Plus

                                                                         
Query: 502   ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
             |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 20012 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 20071

                                                                         
Query: 562   ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
             ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 20072 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 20131

                     
Query: 622   tacttgga 629
              |||||||
Sbjct: 20132 aacttgga 20139



to top

>gb|AY039895.1| Arabidopsis thaliana AT4g24190/T22A6_20 mRNA, complete cds
          Length = 2702

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 2201 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2142

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 2141 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 2082

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 2081 aacttgga 2074



to top

>gb|BT004527.1| Arabidopsis thaliana At4g24190/T22A6_20 gene, complete cds
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 2153 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2094

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 2093 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 2034

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 2033 aacttgga 2026



to top

>dbj|AB064528.1| Arabidopsis thaliana SHD mRNA for SHEPHERD, complete cds
          Length = 2674

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 2193 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 2134

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 2133 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 2074

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 2073 aacttgga 2066



to top

>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence,
           complete sequence
          Length = 116156

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 502 ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
           |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 851 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 792

                                                                       
Query: 562 ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
           ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 791 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 732

                   
Query: 622 tacttgga 629
            |||||||
Sbjct: 731 aacttgga 724



to top

>dbj|AB064527.1| Arabidopsis thaliana SHD gene for SHEPHERD, complete cds
          Length = 6679

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 502  ttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatgtacgcctgc 561
            |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct: 5136 ttgatgatagggtgtcgtgggttgatctcgaggactctctttccgcgcatgtaagcttgc 5077

                                                                        
Query: 562  ttgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatcca 621
            ||  | || ||||| || || || | |||||||||| ||||||| || | ||||||||||
Sbjct: 5076 ttattagcatccgagagagtttgggactgcatgatcctctccatattagcactccatcca 5017

                    
Query: 622  tacttgga 629
             |||||||
Sbjct: 5016 aacttgga 5009



to top

>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence
          Length = 116601

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                         
Query: 493   cggagctccttgatgatggggtgccgggggttgatctccaggaccctcttgccgcgcatg 552
             ||||| ||||||||||| ||||| |  || |||||||| || ||||||||||||||||||
Sbjct: 80122 cggagttccttgatgatagggtgtctaggattgatctcaagaaccctcttgccgcgcatg 80063

                        
Query: 553   tacgcctgctt 563
             || || |||||
Sbjct: 80062 tatgcttgctt 80052



to top

>gb|DQ084238.1| Leishmania donovani chagasi clone LCPE01EX020024H11.g 83 kDa heat
           shock protein (hsp83) mRNA, partial cds
          Length = 564

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 496 agctccttgatgatggggtgccgggggttgatctcca 532
           |||||||||||||||||||| | |||||||| |||||
Sbjct: 136 agctccttgatgatggggtgtctggggttgagctcca 100



to top

>gb|DQ084237.1| Leishmania donovani chagasi clone LCPE01EX020050A04.g 83 kDa heat
           shock protein (hsp83) mRNA, partial cds
          Length = 597

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 496 agctccttgatgatggggtgccgggggttgatctcca 532
           |||||||||||||||||||| | |||||||| |||||
Sbjct: 513 agctccttgatgatggggtgtctggggttgagctcca 477



to top

>emb|X87770.2|LIHSP83GN Leishmania infantum hsp83-1 gene for heat shock protein 83-1 and
            hsp83-2 gene for heat shock protein 83-2
          Length = 3744

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 496  agctccttgatgatggggtgccgggggttgatctcca 532
            |||||||||||||||||||| | |||||||| |||||
Sbjct: 1914 agctccttgatgatggggtgtctggggttgagctcca 1878



to top

>gb|AY103538.1| Zea mays PCO150589 mRNA sequence
          Length = 2534

 Score = 48.1 bits (24), Expect = 0.043
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 563  tgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttgg 610
            |||||| ||||  ||||| |||||||| ||||||| ||||||||||||
Sbjct: 1968 tgctcgagtccctcagggcctgtgccttcatgatcctctccatgttgg 1921



to top

>emb|CT573078.1| Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE
          Length = 165916

 Score = 48.1 bits (24), Expect = 0.043
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 582   ctgtgcctgcatgatcttctccatgttggaactccatccatact 625
             |||||||| ||||||| |||||||||||| | |||| |||||||
Sbjct: 33488 ctgtgccttcatgatcctctccatgttggcagtccaaccatact 33445



 Score = 48.1 bits (24), Expect = 0.043
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 582   ctgtgcctgcatgatcttctccatgttggaactccatccatact 625
             |||||||| ||||||| |||||||||||| | |||| |||||||
Sbjct: 22847 ctgtgccttcatgatcctctccatgttggcagtccaaccatact 22804



to top

>gb|AF135117.1|AF135117 Salmo salar heat shock protein hsp90 beta (hsp90 beta) mRNA, complete
            cds
          Length = 2625

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 576  cagggtctgtgcctgcatgatcttctccatgttgg 610
            ||||| |||||||| ||||||| ||||||||||||
Sbjct: 1909 cagggcctgtgccttcatgatcctctccatgttgg 1875



to top

>gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRNA, complete cds
          Length = 2397

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 563  tgctcgcgtccgacagggtctgtgcctgcatgatcttctccatgttggaactccatccat 622
            |||||| ||||  ||||| ||| |||| ||||||| |||||||||||| | |||| ||||
Sbjct: 1898 tgctcgtgtccctcagggcctgggccttcatgatcctctccatgttggcagtccagccat 1839

               
Query: 623  act 625
            |||
Sbjct: 1838 act 1836



to top

>gb|AF384808.1| Cryptococcus neoformans var. grubii heat-shock protein 90 gene,
            partial cds
          Length = 2391

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 495  gagctccttgatgatggggtgccgggggttgatctcca 532
            |||||||||||||||||||||   |||||||| |||||
Sbjct: 2154 gagctccttgatgatggggtgagaggggttgagctcca 2117



to top

>gb|AY118578.1| Drosophila melanogaster LD43460 full insert cDNA
          Length = 1210

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 496 agctccttgatgatggggtgccgggggttgatctccag 533
           |||| ||||||||||||||||   ||||||||||||||
Sbjct: 910 agcttcttgatgatggggtgctttgggttgatctccag 873



to top

>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 171     atttctttctaatgaaatgaaa 192
               ||||||||||||||||||||||
Sbjct: 1261169 atttctttctaatgaaatgaaa 1261148



to top

>ref|NM_058091.3| Drosophila melanogaster Trap1 CG3152-RA (Trap1), mRNA
          Length = 2478

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 496  agctccttgatgatggggtgccgggggttgatctccag 533
            |||| ||||||||||||||||   ||||||||||||||
Sbjct: 2197 agcttcttgatgatggggtgctttgggttgatctccag 2160



to top

>gb|AY122624.1| Dimastigella trypaniformis strain Ulm heat shock protein 90 (HSP-90)
            gene, partial cds
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 496  agctccttgatgatggggtgccgggggttgatctccag 533
            |||||||||||||||| ||| |  ||||||||||||||
Sbjct: 1740 agctccttgatgatggcgtggctcgggttgatctccag 1703



to top

>gb|AF115775.2|AF115775 Drosophila melanogaster Hsp90-related protein TRAP1 mRNA, complete
            cds
          Length = 2162

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 496  agctccttgatgatggggtgccgggggttgatctccag 533
            |||| ||||||||||||||||   ||||||||||||||
Sbjct: 2000 agcttcttgatgatggggtgctttgggttgatctccag 1963



to top

>gb|BT001316.1| Drosophila melanogaster AT15050 full insert cDNA
          Length = 2475

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 496  agctccttgatgatggggtgccgggggttgatctccag 533
            |||| ||||||||||||||||   ||||||||||||||
Sbjct: 2193 agcttcttgatgatggggtgctttgggttgatctccag 2156



to top

>gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence
          Length = 2179

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 582  ctgtgcctgcatgatcttctccatgttgg 610
            |||||||| ||||||| ||||||||||||
Sbjct: 1704 ctgtgccttcatgatcctctccatgttgg 1676



to top

>gb|AC153140.5| Mus musculus BAC clone RP23-340P19 from chromosome 12, complete sequence
          Length = 241834

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 608    tggaactccatccatacttgg 628
              |||||||||||||||||||||
Sbjct: 152955 tggaactccatccatacttgg 152935



to top

>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 179     ctaatgaaatgaaagctaaat 199
               |||||||||||||||||||||
Sbjct: 1421262 ctaatgaaatgaaagctaaat 1421242



to top

>emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 2/11
          Length = 346357

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    agtccttggggtccggcaggt 403
              |||||||||||||||||||||
Sbjct: 266763 agtccttggggtccggcaggt 266743



to top

>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ttctaatgaaatgaaagctaa 197
              |||||||||||||||||||||
Sbjct: 112594 ttctaatgaaatgaaagctaa 112614



to top

>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    aaccatcacatttccagtcca 168
              |||||||||||||||||||||
Sbjct: 132650 aaccatcacatttccagtcca 132630



to top

>gb|AY109427.1| Zea mays CL1264_2 mRNA sequence
          Length = 1267

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 582 ctgtgcctgcatgatcttctccatgttgg 610
           |||||||| ||||||| ||||||||||||
Sbjct: 687 ctgtgccttcatgatcctctccatgttgg 659



to top

>gb|M60499.1|HUMPROFILC Human profilaggrin mRNA, 5' end
          Length = 1496

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 460 ccctcgctgtcgctgtcctgg 480
           |||||||||||||||||||||
Sbjct: 349 ccctcgctgtcgctgtcctgg 329



to top

>gb|AC163634.4| Mus musculus BAC clone RP23-152O2 from chromosome 12, complete sequence
          Length = 199499

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 608   tggaactccatccatacttgg 628
             |||||||||||||||||||||
Sbjct: 49214 tggaactccatccatacttgg 49234



to top

>gb|M73492.1|LEIHSP90 Leishmania donovani heat shock protein 90 mRNA, 3' end
          Length = 2197

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 500  ccttgatgatggggtgccgggggttgatctcca 532
            |||||||||||||||| | |||||||| |||||
Sbjct: 1105 ccttgatgatggggtgtctggggttgagctcca 1073



to top

>gb|M92926.1|LEIHSP01 Leishmania amazonensis heat shock protein 83 gene, complete cds
          Length = 2106

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 496  agctccttgatgatggggtgccgggggttgatctcca 532
            ||||||||||||||||||||   |||||||| |||||
Sbjct: 1853 agctccttgatgatggggtgtttggggttgagctcca 1817


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,705,939
Number of Sequences: 3902068
Number of extensions: 4705939
Number of successful extensions: 104040
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103905
Number of HSP's gapped (non-prelim): 133
length of query: 756
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 733
effective length of database: 17,143,297,704
effective search space: 12566037217032
effective search space used: 12566037217032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top