ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24l03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence Length = 731 Score = 317 bits (160), Expect = 3e-83 Identities = 289/332 (87%) Strand = Plus / Minus Query: 322 tcttctcgtcctcaaaagcttgcttcaggttctcgagctccttgtctagatcattgattg 381 ||||||| ||||||||||||||||| |||| ||| ||||| ||||||||||||||||| | Sbjct: 525 tcttctcatcctcaaaagcttgcttaaggtactcaagctctttgtctagatcattgatag 466 Query: 382 cttgggtatacgcctgcgttggggaggattggcttgcagtatggatcctaacaatgatct 441 | ||||| || |||||||| |||||||| ||||| | || ||||||||||||||||||| Sbjct: 465 cctgggtgtaggcctgcgtcggggaggactggctcgttgtgtggatcctaacaatgatct 406 Query: 442 tgtactgaagggggtgaggcagcttatagccagcaaagtgaacatttgggtccctgtgca 501 ||||||| || |||||||| |||||||| || |||||| ||||||||||||| ||||||| Sbjct: 405 tgtactggagtgggtgagggagcttatacccggcaaagagaacatttgggtctctgtgca 346 Query: 502 actgcatgcggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcag 561 |||||||||||||||| ||||| | ||||| || || ||||| | ||||| ||||||| Sbjct: 345 actgcatgcggaggatattgcctacagtgtgatcctcgcgttcgacagtgaatgatgcag 286 Query: 562 cattcatgatctttgtatccttctcgaaggacaccttctttgtgccctcaggcacgacga 621 |||||| |||||||||||| |||| ||||||| ||||| |||||||| |||||||||| Sbjct: 285 cattcacaatctttgtatccctctcataggacactttcttggtgccctctggcacgacga 226 Query: 622 agcgctcatagcggtcaggggcattcatctcc 653 | |||||||| ||||||||||||||||||||| Sbjct: 225 aacgctcataacggtcaggggcattcatctcc 194
>dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053F13, full insert sequence Length = 787 Score = 283 bits (143), Expect = 4e-73 Identities = 284/331 (85%) Strand = Plus / Minus Query: 322 tcttctcgtcctcaaaagcttgcttcaggttctcgagctccttgtctagatcattgattg 381 ||||||| ||||||||||||||||| || ||||| ||||||||||||| ||||||||||| Sbjct: 505 tcttctcatcctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattg 446 Query: 382 cttgggtatacgcctgcgttggggaggattggcttgcagtatggatcctaacaatgatct 441 | || || ||||| || || |||| ||| ||| |||||||||||| ||| |||| ||||| Sbjct: 445 cctgtgtgtacgcttgagtaggggtggactggtttgcagtatggaccctgacaaggatct 386 Query: 442 tgtactgaagggggtgaggcagcttatagccagcaaagtgaacatttgggtccctgtgca 501 ||||||||||||| ||||| |||||||| ||||||||| | || |||||||||||||| | Sbjct: 385 tgtactgaaggggatgagggagcttataaccagcaaagaggacgtttgggtccctgtgga 326 Query: 502 actgcatgcggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcag 561 ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||| Sbjct: 325 gctgcatgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccag 266 Query: 562 cattcatgatctttgtatccttctcgaaggacaccttctttgtgccctcaggcacgacga 621 |||||| |||||||||||| ||| | || |||||||| || ||||||||||| || | Sbjct: 265 cattcacaatctttgtatcccgctcatatgataccttcttggttccctcaggcaccacaa 206 Query: 622 agcgctcatagcggtcaggggcattcatctc 652 |||| || |||||||| || ||||||||||| Sbjct: 205 agcgttcgtagcggtcgggagcattcatctc 175
>ref|XM_476775.1| Oryza sativa (japonica cultivar-group), mRNA Length = 363 Score = 278 bits (140), Expect = 2e-71 Identities = 281/328 (85%) Strand = Plus / Minus Query: 322 tcttctcgtcctcaaaagcttgcttcaggttctcgagctccttgtctagatcattgattg 381 ||||||| ||||||||||||||||| || ||||| ||||||||||||| ||||||||||| Sbjct: 328 tcttctcatcctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattg 269 Query: 382 cttgggtatacgcctgcgttggggaggattggcttgcagtatggatcctaacaatgatct 441 | || || ||||| || || |||| ||| ||| |||||||||||| ||| |||| ||||| Sbjct: 268 cctgtgtgtacgcttgagtaggggtggactggtttgcagtatggaccctgacaaggatct 209 Query: 442 tgtactgaagggggtgaggcagcttatagccagcaaagtgaacatttgggtccctgtgca 501 ||||||||||||| ||||| |||||||| ||||||||| | || |||||||||||||| | Sbjct: 208 tgtactgaaggggatgagggagcttataaccagcaaagaggacgtttgggtccctgtgga 149 Query: 502 actgcatgcggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcag 561 ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||| Sbjct: 148 gctgcatgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccag 89 Query: 562 cattcatgatctttgtatccttctcgaaggacaccttctttgtgccctcaggcacgacga 621 |||||| |||||||||||| ||| | || |||||||| || ||||||||||| || | Sbjct: 88 cattcacaatctttgtatcccgctcatatgataccttcttggttccctcaggcaccacaa 29 Query: 622 agcgctcatagcggtcaggggcattcat 649 |||| || |||||||| || |||||||| Sbjct: 28 agcgttcgtagcggtcgggagcattcat 1
>dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131J17, full insert sequence Length = 812 Score = 276 bits (139), Expect = 9e-71 Identities = 283/331 (85%) Strand = Plus / Minus Query: 322 tcttctcgtcctcaaaagcttgcttcaggttctcgagctccttgtctagatcattgattg 381 ||||||| ||||||||||||||||| || ||||| ||||||||||||| ||||||||||| Sbjct: 507 tcttctcatcctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattg 448 Query: 382 cttgggtatacgcctgcgttggggaggattggcttgcagtatggatcctaacaatgatct 441 | || || ||||| || || |||| ||| ||| |||||||||||| ||| |||| ||||| Sbjct: 447 cctgtgtgtacgcttgagtaggggtggactggtttgcagtatggaccctgacaaggatct 388 Query: 442 tgtactgaagggggtgaggcagcttatagccagcaaagtgaacatttgggtccctgtgca 501 ||||||||||||| ||||| |||||||| ||||||||| | || |||||||||||||| | Sbjct: 387 tgtactgaaggggatgagggagcttataaccagcaaagaggacgtttgggtccctgtgga 328 Query: 502 actgcatgcggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcag 561 ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||| Sbjct: 327 gctgcatgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccag 268 Query: 562 cattcatgatctttgtatccttctcgaaggacaccttctttgtgccctcaggcacgacga 621 |||||| |||||||||||| ||| | || |||||||| || ||| ||||||| || | Sbjct: 267 cattcacaatctttgtatcccgctcatatgataccttcttggttcccccaggcaccacaa 208 Query: 622 agcgctcatagcggtcaggggcattcatctc 652 |||| || |||||||| || ||||||||||| Sbjct: 207 agcgttcgtagcggtcgggagcattcatctc 177
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 506 catgcggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcagcatt 565 |||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||| Sbjct: 3847143 catgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcatt 3847202 Query: 566 catgatctttgtatcc 581 || |||||||||||| Sbjct: 3847203 cacaatctttgtatcc 3847218 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 331 cctcaaaagcttgcttcaggttctcgagctccttgtctagatcattgattgcttgggtat 390 |||||||||||||||| || ||||| ||||||||||||| |||||||||||| || || | Sbjct: 3846803 cctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtgtgt 3846862 Query: 391 acgcctgcgttggggaggattggcttgcagtatgga 426 |||| || || |||| ||| ||| |||||||||||| Sbjct: 3846863 acgcttgagtaggggtggactggtttgcagtatgga 3846898 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 432 acaatgatcttgtactgaagggggtgaggcagcttatagccagcaaagtgaacatttggg 491 |||| |||||||||||||||||| ||||| |||||||| ||||||||| | || |||||| Sbjct: 3846984 acaaggatcttgtactgaaggggatgagggagcttataaccagcaaagaggacgtttggg 3847043 Query: 492 tccctgtg 499 |||||||| Sbjct: 3847044 tccctgtg 3847051 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 596 cttctttgtgccctcaggcacgacgaagcgctcatagcggtcaggggcattcatctc 652 |||||| || ||||||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 3849037 cttcttggttccctcaggcaccacaaagcgttcgtagcggtcgggagcattcatctc 3849093
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 506 catgcggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcagcatt 565 |||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||| Sbjct: 86255 catgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcatt 86314 Query: 566 catgatctttgtatcc 581 || |||||||||||| Sbjct: 86315 cacaatctttgtatcc 86330 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Plus Query: 331 cctcaaaagcttgcttcaggttctcgagctccttgtctagatcattgattgcttgggtat 390 |||||||||||||||| || ||||| ||||||||||||| |||||||||||| || || | Sbjct: 85915 cctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtgtgt 85974 Query: 391 acgcctgcgttggggaggattggcttgcagtatgga 426 |||| || || |||| ||| ||| |||||||||||| Sbjct: 85975 acgcttgagtaggggtggactggtttgcagtatgga 86010 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 432 acaatgatcttgtactgaagggggtgaggcagcttatagccagcaaagtgaacatttggg 491 |||| |||||||||||||||||| ||||| |||||||| ||||||||| | || |||||| Sbjct: 86096 acaaggatcttgtactgaaggggatgagggagcttataaccagcaaagaggacgtttggg 86155 Query: 492 tccctgtg 499 |||||||| Sbjct: 86156 tccctgtg 86163 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 596 cttctttgtgccctcaggcacgacgaagcgctcatagcggtcaggggcattcatctc 652 |||||| || ||||||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 88149 cttcttggttccctcaggcaccacaaagcgttcgtagcggtcgggagcattcatctc 88205
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261, complete sequence Length = 121882 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 510 cggaggatgttgccgatggtgtggtcttcacgttcaattgtgaaagatgcagcattcatg 569 ||||||||||| ||||||||||| || || || || || ||||| ||||| ||||| ||| Sbjct: 40428 cggaggatgtttccgatggtgtgatcctctcgctctatggtgaacgatgccgcattgatg 40369 Query: 570 atctttgtatccttctcg 587 ||||| || ||| ||||| Sbjct: 40368 atcttggtgtccctctcg 40351
>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete sequence Length = 209911 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 224 aggagttcagagactcatcgactagc 249 |||||||||||||||||| ||||||| Sbjct: 57811 aggagttcagagactcatagactagc 57836
>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence Length = 181442 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 592 acaccttctttgtgccctcag 612 ||||||||||||||||||||| Sbjct: 170532 acaccttctttgtgccctcag 170512
>emb|AL157409.16| Human DNA sequence from clone RP5-823D19 on chromosome 1q42.11-43 Contains the 5' end of the SIPA1L2 gene for signal-induced proliferation-associated 1 like 2, complete sequence Length = 143798 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 gggtccctgtgcaactgcatg 509 ||||||||||||||||||||| Sbjct: 22867 gggtccctgtgcaactgcatg 22887
>gb|AC132516.4| Homo sapiens 3 BAC RP11-264A3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 66262 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 488 tgggtccctgtgcaactgcat 508 ||||||||||||||||||||| Sbjct: 57078 tgggtccctgtgcaactgcat 57058
>gb|AC116301.8| Homo sapiens 3 BAC RP11-625D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62190 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 488 tgggtccctgtgcaactgcat 508 ||||||||||||||||||||| Sbjct: 53007 tgggtccctgtgcaactgcat 52987
>ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus similar to anaphase-promoting complex subunit 7 (LOC576029), mRNA Length = 738 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 418 cagtatggatcctaacaatga 438 ||||||||||||||||||||| Sbjct: 483 cagtatggatcctaacaatga 503
>dbj|AB223866.1| Aspergillus oryzae cDNA, contig sequence: AoEST0707 Length = 1154 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 627 tcatagcggtcaggggcattcatct 651 ||||| ||||||||||||||||||| Sbjct: 414 tcataacggtcaggggcattcatct 390
>gb|AF477990.1| Mus musculus CDT1 protein gene, complete cds Length = 7485 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 592 acaccttctttgtgccctcag 612 ||||||||||||||||||||| Sbjct: 5709 acaccttctttgtgccctcag 5689
>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence Length = 229414 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 592 acaccttctttgtgccctcag 612 ||||||||||||||||||||| Sbjct: 99715 acaccttctttgtgccctcag 99695
>emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on chromosome 4, complete sequence Length = 182520 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 gaaagatgcagcattcatgatcttt 575 |||| |||||||||||||||||||| Sbjct: 115113 gaaaaatgcagcattcatgatcttt 115137
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttatagagatttacaatctc 34 |||||||||||||||||||| Sbjct: 1158386 ttatagagatttacaatctc 1158367
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttatagagatttacaatctc 34 |||||||||||||||||||| Sbjct: 1147713 ttatagagatttacaatctc 1147694
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttatagagatttacaatctc 34 |||||||||||||||||||| Sbjct: 1180007 ttatagagatttacaatctc 1179988
>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181207 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 ttcatgatctttgtatcctt 583 |||||||||||||||||||| Sbjct: 23174 ttcatgatctttgtatcctt 23155 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,120,476 Number of Sequences: 3902068 Number of extensions: 4120476 Number of successful extensions: 68910 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68841 Number of HSP's gapped (non-prelim): 66 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
