ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24l01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110091.1| Zea mays CL19870_1 mRNA sequence 242 1e-60
2ref|XM_482823.1| Oryza sativa (japonica cultivar-group), mRNA 234 3e-58
3ref|XM_507261.1| PREDICTED Oryza sativa (japonica cultivar-group... 234 3e-58
4dbj|AK102612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
5dbj|AK059195.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 3e-58
6gb|BT018957.1| Zea mays clone Contig188.F mRNA sequence 226 6e-56
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
8dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
9dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
10ref|NM_180235.1| Arabidopsis thaliana unknown protein AT3G12050 ... 60 8e-06
11ref|NM_112039.2| Arabidopsis thaliana unknown protein AT3G12050 ... 60 8e-06
12gb|BT000045.1| Arabidopsis thaliana unknown protein (At3g12050) ... 60 8e-06
13gb|AY120721.1| Arabidopsis thaliana unknown protein (At3g12050) ... 60 8e-06
14gb|AC069473.4|AC069473 Arabidopsis thaliana chromosome 3 BAC T21... 60 8e-06
15gb|AY087796.1| Arabidopsis thaliana clone 38478 mRNA, complete s... 60 8e-06
16dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 60 8e-06
17emb|AJ719134.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT2-31-39... 46 0.12
18gb|AC114901.8| Mus musculus chromosome 3, clone RP23-33I24, comp... 42 1.9
19gb|BC077605.1| Xenopus laevis MGC84524 protein, mRNA (cDNA clone... 42 1.9
20gb|AC159970.4| Mus musculus chromosome 3, clone RP23-301J11, com... 42 1.9
21emb|AL954675.7| Mouse DNA sequence from clone RP24-468P16 on chr... 42 1.9
22gb|BC077988.1| Xenopus laevis achalasia, adrenocortical insuffic... 40 7.7
23gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, com... 40 7.7
24gb|AC121611.3| Mus musculus BAC clone RP23-330I2 from chromosome... 40 7.7
25emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chr... 40 7.7
26emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chr... 40 7.7
27gb|AC156982.8| Mus musculus chromosome 19, clone RP23-183N3, com... 40 7.7
28emb|BX957342.5| Zebrafish DNA sequence from clone CH211-120P12 i... 40 7.7
29gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, compl... 40 7.7
30gb|AC099519.2| Homo sapiens chromosome 5 clone RP11-695O10, comp... 40 7.7
31gb|AC008911.6| Homo sapiens chromosome 5 clone CTD-2268J5, compl... 40 7.7
32gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, comp... 40 7.7
33gb|BC097686.1| Xenopus laevis cDNA clone MGC:115218 IMAGE:340364... 40 7.7
34gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosom... 40 7.7
35emb|AL928661.10| Mouse DNA sequence from clone RP23-3E2 on chrom... 40 7.7
36emb|CT025528.10| Mouse DNA sequence from clone RP23-205O23 on ch... 40 7.7
37emb|AL807773.7| Mouse DNA sequence from clone RP23-228L24 on chr... 40 7.7 
>gb|AY110091.1| Zea mays CL19870_1 mRNA sequence
          Length = 639

 Score =  242 bits (122), Expect = 1e-60
 Identities = 236/274 (86%)
 Strand = Plus / Plus

                                                                       
Query: 293 cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
           |||||||||||||||| | ||||||| |||||| ||||| ||| ||||||||||||||||
Sbjct: 257 cccaaaaccgaacactccgcgtatccgctggaatatgagttctctccagcctctctcggt 316

                                                                       
Query: 353 gttctccaccacagttgagttcccatacctgtcttcttctggcacatcagtttgtttgag 412
           |||||| ||||||||||| || |||||| ||||||| |||||||||||||||||||||||
Sbjct: 317 gttctctaccacagttgaatttccatacttgtcttcctctggcacatcagtttgtttgag 376

                                                                       
Query: 413 ctttattattgtcactcctgactcaggctcatcaaacaccaacctgactgtagaatggac 472
           |||||| ||||| ||||| ||||| ||||||||||||||||||| ||| |  || |  | 
Sbjct: 377 ctttatgattgtaactccagactcgggctcatcaaacaccaaccggaccgaggagtacaa 436

                                                                       
Query: 473 accatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctc 532
            || |||| |||||| ||||||||||| || ||  ||| |||||||||||||||||||||
Sbjct: 437 gccgtcaggccagcttccaaaccgccacttttgtgcaatcagcttcccttcctgcagctc 496

                                             
Query: 533 ctcattaacacctgtgatggacccatcaaagagg 566
           ||| || || || ||||||||||| || ||||||
Sbjct: 497 ctcgttgacgccagtgatggacccgtcgaagagg 530
to top
>ref|XM_482823.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1296

 Score =  234 bits (118), Expect = 3e-58
 Identities = 235/274 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
            ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 1134 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 1075

                                                                        
Query: 353  gttctccaccacagttgagttcccatacctgtcttcttctggcacatcagtttgtttgag 412
            |||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 1074 gttctccaccacagttgaatttccatatctgtcttcctctggcacatcagtttgtttgag 1015

                                                                        
Query: 413  ctttattattgtcactcctgactcaggctcatcaaacaccaacctgactgtagaatggac 472
              |||| | ||| ||||| ||||||||||||||||| |||||||| || || || || ||
Sbjct: 1014 gcttatgactgtaactcccgactcaggctcatcaaataccaacctaaccgtcgagtgcac 955

                                                                        
Query: 473  accatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctc 532
             || || | |||||| || |||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 954  gccgtctggccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactc 895

                                              
Query: 533  ctcattaacacctgtgatggacccatcaaagagg 566
            |||||| || ||  |||| |||||||| ||||||
Sbjct: 894  ctcattgacgccgctgattgacccatcgaagagg 861
to top
>ref|XM_507261.1| PREDICTED Oryza sativa (japonica cultivar-group), B1111C03.37 mRNA
          Length = 1462

 Score =  234 bits (118), Expect = 3e-58
 Identities = 235/274 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
            ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 1243 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 1184

                                                                        
Query: 353  gttctccaccacagttgagttcccatacctgtcttcttctggcacatcagtttgtttgag 412
            |||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 1183 gttctccaccacagttgaatttccatatctgtcttcctctggcacatcagtttgtttgag 1124

                                                                        
Query: 413  ctttattattgtcactcctgactcaggctcatcaaacaccaacctgactgtagaatggac 472
              |||| | ||| ||||| ||||||||||||||||| |||||||| || || || || ||
Sbjct: 1123 gcttatgactgtaactcccgactcaggctcatcaaataccaacctaaccgtcgagtgcac 1064

                                                                        
Query: 473  accatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctc 532
             || || | |||||| || |||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 1063 gccgtctggccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactc 1004

                                              
Query: 533  ctcattaacacctgtgatggacccatcaaagagg 566
            |||||| || ||  |||| |||||||| ||||||
Sbjct: 1003 ctcattgacgccgctgattgacccatcgaagagg 970
to top
>dbj|AK102612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099D06, full
            insert sequence
          Length = 1296

 Score =  234 bits (118), Expect = 3e-58
 Identities = 235/274 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
            ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 1134 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 1075

                                                                        
Query: 353  gttctccaccacagttgagttcccatacctgtcttcttctggcacatcagtttgtttgag 412
            |||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 1074 gttctccaccacagttgaatttccatatctgtcttcctctggcacatcagtttgtttgag 1015

                                                                        
Query: 413  ctttattattgtcactcctgactcaggctcatcaaacaccaacctgactgtagaatggac 472
              |||| | ||| ||||| ||||||||||||||||| |||||||| || || || || ||
Sbjct: 1014 gcttatgactgtaactcccgactcaggctcatcaaataccaacctaaccgtcgagtgcac 955

                                                                        
Query: 473  accatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctc 532
             || || | |||||| || |||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 954  gccgtctggccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactc 895

                                              
Query: 533  ctcattaacacctgtgatggacccatcaaagagg 566
            |||||| || ||  |||| |||||||| ||||||
Sbjct: 894  ctcattgacgccgctgattgacccatcgaagagg 861
to top
>dbj|AK059195.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A01, full
            insert sequence
          Length = 1462

 Score =  234 bits (118), Expect = 3e-58
 Identities = 235/274 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
            ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 1243 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 1184

                                                                        
Query: 353  gttctccaccacagttgagttcccatacctgtcttcttctggcacatcagtttgtttgag 412
            |||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 1183 gttctccaccacagttgaatttccatatctgtcttcctctggcacatcagtttgtttgag 1124

                                                                        
Query: 413  ctttattattgtcactcctgactcaggctcatcaaacaccaacctgactgtagaatggac 472
              |||| | ||| ||||| ||||||||||||||||| |||||||| || || || || ||
Sbjct: 1123 gcttatgactgtaactcccgactcaggctcatcaaataccaacctaaccgtcgagtgcac 1064

                                                                        
Query: 473  accatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctc 532
             || || | |||||| || |||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 1063 gccgtctggccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactc 1004

                                              
Query: 533  ctcattaacacctgtgatggacccatcaaagagg 566
            |||||| || ||  |||| |||||||| ||||||
Sbjct: 1003 ctcattgacgccgctgattgacccatcgaagagg 970
to top
>gb|BT018957.1| Zea mays clone Contig188.F mRNA sequence
          Length = 1329

 Score =  226 bits (114), Expect = 6e-56
 Identities = 234/274 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
            |||||||||||||||| | ||||||| |||||| ||||| ||| ||| ||||||||||||
Sbjct: 1136 cccaaaaccgaacactccgcgtatccgctggaatatgagttctctcccgcctctctcggt 1077

                                                                        
Query: 353  gttctccaccacagttgagttcccatacctgtcttcttctggcacatcagtttgtttgag 412
            |||||| ||||||||||| || |||||| ||||||| |||||| ||||||||||||||||
Sbjct: 1076 gttctctaccacagttgaatttccatacttgtcttcctctggcccatcagtttgtttgag 1017

                                                                        
Query: 413  ctttattattgtcactcctgactcaggctcatcaaacaccaacctgactgtagaatggac 472
            |||||| ||||| ||||| ||||| ||||||||||||||||||| ||| |  || |  | 
Sbjct: 1016 ctttatgattgtaactccagactcgggctcatcaaacaccaaccggaccgaggagtacaa 957

                                                                        
Query: 473  accatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctc 532
             || |||| |||||| ||||||||||| || ||  ||| |||||||||||||||||||||
Sbjct: 956  gccgtcaggccagcttccaaaccgccacttttgtgcaatcagcttcccttcctgcagctc 897

                                              
Query: 533  ctcattaacacctgtgatggacccatcaaagagg 566
            ||| || || || ||||||||||| || ||||||
Sbjct: 896  ctcgttgacgccagtgatggacccgtcgaagagg 863
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                            
Query: 293      cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
                ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 22770119 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 22770178

                                           
Query: 353      gttctccaccacagttgagttcccata 379
                |||||||||||||||||| || |||||
Sbjct: 22770179 gttctccaccacagttgaatttccata 22770205



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                            
Query: 377      atacctgtcttcttctggcacatcagtttgtttgagctttattattgtcactcctgactc 436
                |||||||||||| |||||||||||||||||||||||  |||| | ||| ||||| |||||
Sbjct: 22770297 atacctgtcttcctctggcacatcagtttgtttgaggcttatgactgtaactcccgactc 22770356

                                     
Query: 437      aggctcatcaaacaccaacct 457
                |||||||||||| ||||||||
Sbjct: 22770357 aggctcatcaaataccaacct 22770377



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                            
Query: 482      ccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctcctcattaac 541
                |||||| || |||||||| |||||||| | ||||||||||||||||| ||||||||| ||
Sbjct: 22772972 ccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactcctcattgac 22773031

                                         
Query: 542      acctgtgatggacccatcaaagagg 566
                 ||  |||| |||||||| ||||||
Sbjct: 22773032 gccgctgattgacccatcgaagagg 22773056
to top
>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1116H04
          Length = 140142

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                         
Query: 293   cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
             ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 96761 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 96820

                                        
Query: 353   gttctccaccacagttgagttcccata 379
             |||||||||||||||||| || |||||
Sbjct: 96821 gttctccaccacagttgaatttccata 96847



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                         
Query: 377   atacctgtcttcttctggcacatcagtttgtttgagctttattattgtcactcctgactc 436
             |||||||||||| |||||||||||||||||||||||  |||| | ||| ||||| |||||
Sbjct: 96939 atacctgtcttcctctggcacatcagtttgtttgaggcttatgactgtaactcccgactc 96998

                                  
Query: 437   aggctcatcaaacaccaacct 457
             |||||||||||| ||||||||
Sbjct: 96999 aggctcatcaaataccaacct 97019



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                         
Query: 482   ccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctcctcattaac 541
             |||||| || |||||||| |||||||| | ||||||||||||||||| ||||||||| ||
Sbjct: 99614 ccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactcctcattgac 99673

                                      
Query: 542   acctgtgatggacccatcaaagagg 566
              ||  |||| |||||||| ||||||
Sbjct: 99674 gccgctgattgacccatcgaagagg 99698
to top
>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1111C03
          Length = 144879

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                          
Query: 293    cccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggt 352
              ||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct: 138913 cccaaaaccaaacactccgcgtatcctctggaagatgagttctctccagcctcgctccgt 138972

                                         
Query: 353    gttctccaccacagttgagttcccata 379
              |||||||||||||||||| || |||||
Sbjct: 138973 gttctccaccacagttgaatttccata 138999



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                          
Query: 377    atacctgtcttcttctggcacatcagtttgtttgagctttattattgtcactcctgactc 436
              |||||||||||| |||||||||||||||||||||||  |||| | ||| ||||| |||||
Sbjct: 139091 atacctgtcttcctctggcacatcagtttgtttgaggcttatgactgtaactcccgactc 139150

                                   
Query: 437    aggctcatcaaacaccaacct 457
              |||||||||||| ||||||||
Sbjct: 139151 aggctcatcaaataccaacct 139171



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                          
Query: 482    ccagctcccaaaccgccatttctgcacaaccagcttcccttcctgcagctcctcattaac 541
              |||||| || |||||||| |||||||| | ||||||||||||||||| ||||||||| ||
Sbjct: 141766 ccagctaccgaaccgccacttctgcacgatcagcttcccttcctgcaactcctcattgac 141825

                                       
Query: 542    acctgtgatggacccatcaaagagg 566
               ||  |||| |||||||| ||||||
Sbjct: 141826 gccgctgattgacccatcgaagagg 141850
to top
>ref|NM_180235.1| Arabidopsis thaliana unknown protein AT3G12050 transcript variant
            AT3G12050.2 mRNA, complete cds
          Length = 1316

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
            ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 1146 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 1087

                          
Query: 354  ttctccaccacagt 367
            || |||||||||||
Sbjct: 1086 ttttccaccacagt 1073
to top
>ref|NM_112039.2| Arabidopsis thaliana unknown protein AT3G12050 transcript variant
            AT3G12050.1 mRNA, complete cds
          Length = 1433

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
            ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 1263 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 1204

                          
Query: 354  ttctccaccacagt 367
            || |||||||||||
Sbjct: 1203 ttttccaccacagt 1190
to top
>gb|BT000045.1| Arabidopsis thaliana unknown protein (At3g12050) mRNA, complete cds
          Length = 1143

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
            ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 1076 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 1017

                          
Query: 354  ttctccaccacagt 367
            || |||||||||||
Sbjct: 1016 ttttccaccacagt 1003
to top
>gb|AY120721.1| Arabidopsis thaliana unknown protein (At3g12050) mRNA, complete cds
          Length = 1348

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
            ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 1263 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 1204

                          
Query: 354  ttctccaccacagt 367
            || |||||||||||
Sbjct: 1203 ttttccaccacagt 1190
to top
>gb|AC069473.4|AC069473 Arabidopsis thaliana chromosome 3 BAC T21B14 genomic sequence, complete
             sequence
          Length = 85657

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 294   ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
             ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 40836 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 40895

                           
Query: 354   ttctccaccacagt 367
             || |||||||||||
Sbjct: 40896 ttttccaccacagt 40909
to top
>gb|AY087796.1| Arabidopsis thaliana clone 38478 mRNA, complete sequence
          Length = 1284

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
            ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 1171 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 1112

                          
Query: 354  ttctccaccacagt 367
            || |||||||||||
Sbjct: 1111 ttttccaccacagt 1098
to top
>dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18
          Length = 80099

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                         
Query: 294   ccaaaaccgaacactgcacgtatcctctggaagatgagctctttccagcctctctcggtg 353
             ||||| ||||| |||||||| ||||| ||||| || || ||| |||| |||||||| |||
Sbjct: 75232 ccaaatccgaaaactgcacggatcctatggaatataagatctctccatcctctctcagtg 75173

                           
Query: 354   ttctccaccacagt 367
             || |||||||||||
Sbjct: 75172 ttttccaccacagt 75159
to top
>emb|AJ719134.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT2-31-390, cultivar Bright
           Yellow 2
          Length = 336

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 474 ccatcagcccagctcccaaaccgccatttctgcacaaccagcttcccttcctgca 528
           ||||||| |||||| ||||||||||| ||||| |||| ||  || ||||||||||
Sbjct: 112 ccatcaggccagctaccaaaccgccaattctgtacaatcaattttccttcctgca 166
to top
>gb|AC114901.8| Mus musculus chromosome 3, clone RP23-33I24, complete sequence
          Length = 168654

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 305    cactgcacgtatcctctggaagatgagct 333
              ||||||||||| ||||||||||| |||||
Sbjct: 129879 cactgcacgtagcctctggaagaggagct 129851
to top
>gb|BC077605.1| Xenopus laevis MGC84524 protein, mRNA (cDNA clone MGC:84524
            IMAGE:5079355), complete cds
          Length = 3827

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 287  tcagaccccaaaaccgaacac 307
            |||||||||||||||||||||
Sbjct: 3008 tcagaccccaaaaccgaacac 2988
to top
>gb|AC159970.4| Mus musculus chromosome 3, clone RP23-301J11, complete sequence
          Length = 191207

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 305    cactgcacgtatcctctggaagatgagct 333
              ||||||||||| ||||||||||| |||||
Sbjct: 114703 cactgcacgtagcctctggaagaggagct 114731
to top
>emb|AL954675.7| Mouse DNA sequence from clone RP24-468P16 on chromosome 4 Contains an
             RNA and export factor binding protein 1 (Refbp1)
             pseudogene and part of the Ptprd gene for receptor type
             protein tyrosine phosphatase D, complete sequence
          Length = 139452

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   ctatcagcatcaaataaacta 220
             |||||||||||||||||||||
Sbjct: 61565 ctatcagcatcaaataaacta 61545
to top
>gb|BC077988.1| Xenopus laevis achalasia, adrenocortical insufficiency, alacrimia
            (Allgrove, triple-A), mRNA (cDNA clone MGC:81674
            IMAGE:6864633), complete cds
          Length = 3343

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  cagaccccaaaaccgaacac 307
            ||||||||||||||||||||
Sbjct: 2266 cagaccccaaaaccgaacac 2247
to top
>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence
          Length = 191823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    agttcccatacctgtcttct 389
              ||||||||||||||||||||
Sbjct: 120696 agttcccatacctgtcttct 120677
to top
>gb|AC121611.3| Mus musculus BAC clone RP23-330I2 from chromosome 6, complete sequence
          Length = 197889

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    attgtcactcctgactcagg 439
              ||||||||||||||||||||
Sbjct: 170681 attgtcactcctgactcagg 170700
to top
>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a
             novel gene,  the FOXP4 gene for forkhead box P4 and five
             CpG islands, complete sequence
          Length = 180547

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   cttcccttcctgcagctcct 534
             ||||||||||||||||||||
Sbjct: 91721 cttcccttcctgcagctcct 91702
to top
>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part
              of the Abca13 gene for ATP-binding cassette sub-family A
              (ABC1) member 13, complete sequence
          Length = 205759

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    gtgttctccaccacagttga 370
              ||||||||||||||||||||
Sbjct: 153545 gtgttctccaccacagttga 153564
to top
>gb|AC156982.8| Mus musculus chromosome 19, clone RP23-183N3, complete sequence
          Length = 216311

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 509    aaccagcttcccttcctgcagctcctca 536
              ||||||||||||||||| ||||| ||||
Sbjct: 119705 aaccagcttcccttcctccagcttctca 119678
to top
>emb|BX957342.5| Zebrafish DNA sequence from clone CH211-120P12 in linkage group 13,
             complete sequence
          Length = 182888

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tctatcagcatcaaataaac 218
             ||||||||||||||||||||
Sbjct: 14287 tctatcagcatcaaataaac 14268
to top
>gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, complete sequence
          Length = 137632

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   cagcatcaaataaactaaga 223
             ||||||||||||||||||||
Sbjct: 98000 cagcatcaaataaactaaga 98019
to top
>gb|AC099519.2| Homo sapiens chromosome 5 clone RP11-695O10, complete sequence
          Length = 206163

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ctataaccttcaatacaact 45
             ||||||||||||||||||||
Sbjct: 41582 ctataaccttcaatacaact 41601
to top
>gb|AC008911.6| Homo sapiens chromosome 5 clone CTD-2268J5, complete sequence
          Length = 154963

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    ctataaccttcaatacaact 45
             ||||||||||||||||||||
Sbjct: 43753 ctataaccttcaatacaact 43734
to top
>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence
          Length = 165675

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ctataaccttcaatacaact 45
              ||||||||||||||||||||
Sbjct: 160959 ctataaccttcaatacaact 160978
to top
>gb|BC097686.1| Xenopus laevis cDNA clone MGC:115218 IMAGE:3403640, complete cds
          Length = 2197

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  tcagaccccaaaaccgaaca 306
            ||||||||||||||||||||
Sbjct: 1247 tcagaccccaaaaccgaaca 1228
to top
>gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosome 14, complete
             sequence
          Length = 180476

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 514   gcttcccttcctgcagctcctcat 537
             |||||||||||| |||||||||||
Sbjct: 53831 gcttcccttccttcagctcctcat 53808
to top
>emb|AL928661.10| Mouse DNA sequence from clone RP23-3E2 on chromosome 4, complete sequence
          Length = 221208

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    atgagctctttccagcctct 346
              ||||||||||||||||||||
Sbjct: 102247 atgagctctttccagcctct 102266
to top
>emb|CT025528.10| Mouse DNA sequence from clone RP23-205O23 on chromosome 14, complete
              sequence
          Length = 224168

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 514    gcttcccttcctgcagctcctcat 537
              |||||||||||| |||||||||||
Sbjct: 197159 gcttcccttccttcagctcctcat 197136
to top
>emb|AL807773.7| Mouse DNA sequence from clone RP23-228L24 on chromosome X, complete
              sequence
          Length = 186645

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 520    cttcctgcagctcctcatta 539
              ||||||||||||||||||||
Sbjct: 172173 cttcctgcagctcctcatta 172154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,079,737
Number of Sequences: 3902068
Number of extensions: 5079737
Number of successful extensions: 97233
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97133
Number of HSP's gapped (non-prelim): 96
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top