ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24k16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110901.1| Zea mays CL7341_1 mRNA sequence Length = 746 Score = 200 bits (101), Expect = 3e-48 Identities = 125/133 (93%) Strand = Plus / Minus Query: 293 cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttgaaggtgatcttgg 352 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct: 446 cgaaggcggagacggggtaggtcctgccgagcccggtgggcgtcttgaaggtgatcttgg 387 Query: 353 aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgaggagctccttgc 412 ||||||||||| |||||| |||||||||| |||| |||| ||||||||||||||||||| Sbjct: 386 aggggtcgtccctgtcgacgaacatgtcggagagggtgacccagatgaggagctccttgg 327 Query: 413 tcttgaccccggt 425 ||||||||||||| Sbjct: 326 tcttgaccccggt 314
>dbj|AK060099.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H01, full insert sequence Length = 957 Score = 178 bits (90), Expect = 1e-41 Identities = 132/146 (90%) Strand = Plus / Minus Query: 280 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttg 339 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| |||||| Sbjct: 518 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 459 Query: 340 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 399 |||||||||||||||||||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 458 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcggagagggagacccagatg 399 Query: 400 aggagctccttgctcttgaccccggt 425 |||||||||||| ||||| ||||||| Sbjct: 398 aggagctccttggtcttggccccggt 373
>ref|NM_188391.1| Oryza sativa (japonica cultivar-group), Ozsa8117 predicted mRNA Length = 504 Score = 170 bits (86), Expect = 2e-39 Identities = 131/146 (89%) Strand = Plus / Minus Query: 280 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttg 339 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| |||||| Sbjct: 428 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 369 Query: 340 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 399 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 368 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 309 Query: 400 aggagctccttgctcttgaccccggt 425 |||||||||||| ||||| ||||||| Sbjct: 308 aggagctccttggtcttggccccggt 283
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 170 bits (86), Expect = 2e-39 Identities = 131/146 (89%) Strand = Plus / Plus Query: 280 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttg 339 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| |||||| Sbjct: 6010301 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 6010360 Query: 340 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 399 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 6010361 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 6010420 Query: 400 aggagctccttgctcttgaccccggt 425 |||||||||||| ||||| ||||||| Sbjct: 6010421 aggagctccttggtcttggccccggt 6010446
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 170 bits (86), Expect = 2e-39 Identities = 131/146 (89%) Strand = Plus / Plus Query: 280 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttg 339 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| |||||| Sbjct: 78189 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 78248 Query: 340 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 399 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 78249 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 78308 Query: 400 aggagctccttgctcttgaccccggt 425 |||||||||||| ||||| ||||||| Sbjct: 78309 aggagctccttggtcttggccccggt 78334
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 170 bits (86), Expect = 2e-39 Identities = 131/146 (89%) Strand = Plus / Plus Query: 280 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttg 339 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| |||||| Sbjct: 34658 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 34717 Query: 340 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 399 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 34718 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 34777 Query: 400 aggagctccttgctcttgaccccggt 425 |||||||||||| ||||| ||||||| Sbjct: 34778 aggagctccttggtcttggccccggt 34803
>dbj|AK119774.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F06, full insert sequence Length = 787 Score = 170 bits (86), Expect = 2e-39 Identities = 131/146 (89%) Strand = Plus / Minus Query: 280 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtcttg 339 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| |||||| Sbjct: 520 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 461 Query: 340 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 399 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 460 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 401 Query: 400 aggagctccttgctcttgaccccggt 425 |||||||||||| ||||| ||||||| Sbjct: 400 aggagctccttggtcttggccccggt 375
>gb|BT009174.1| Triticum aestivum clone wl1n.pk0107.h1:fis, full insert mRNA sequence Length = 862 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccgg 424 |||| |||||||||||||||||||||||| ||||||| Sbjct: 407 gtgacccagatgaggagctccttgctcttcaccccgg 371
>gb|AY105303.1| Zea mays PCO075489 mRNA sequence Length = 894 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccgg 424 |||| |||||||||||||||||||||||| ||||||| Sbjct: 429 gtgacccagatgaggagctccttgctcttcaccccgg 393
>gb|AF466285.1| Oryza sativa susceptibility homeodomain transciption factor (HDTF) mRNA, partial cds Length = 580 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 393 ccagatgaggagctccttgctcttgaccccgg 424 |||||||||||||||||||||||| ||||||| Sbjct: 188 ccagatgaggagctccttgctcttcaccccgg 157
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 393 ccagatgaggagctccttgctcttgaccccgg 424 |||||||||||||||||||||||| ||||||| Sbjct: 19876477 ccagatgaggagctccttgctcttcaccccgg 19876508
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 393 ccagatgaggagctccttgctcttgaccccgg 424 |||||||||||||||||||||||| ||||||| Sbjct: 143522 ccagatgaggagctccttgctcttcaccccgg 143553
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 393 ccagatgaggagctccttgctcttgaccccgg 424 |||||||||||||||||||||||| ||||||| Sbjct: 14817 ccagatgaggagctccttgctcttcaccccgg 14848
>dbj|AK122046.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114A14, full insert sequence Length = 779 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 393 ccagatgaggagctccttgctcttgaccccgg 424 |||||||||||||||||||||||| ||||||| Sbjct: 398 ccagatgaggagctccttgctcttcaccccgg 367
>dbj|AK063825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A08, full insert sequence Length = 784 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 393 ccagatgaggagctccttgctcttgaccccgg 424 |||||||||||||||||||||||| ||||||| Sbjct: 392 ccagatgaggagctccttgctcttcaccccgg 361
>ref|XM_953549.1| Neurospora crassa OR74A hypothetical protein (NCU09875.1) partial mRNA Length = 1563 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Minus Query: 272 ccttggcgtcgtccttcttctcg 294 ||||||||||||||||||||||| Sbjct: 1432 ccttggcgtcgtccttcttctcg 1410
>ref|XM_330796.1| Neurospora crassa OR74A hypothetical protein (NCU09875.1) partial mRNA Length = 1563 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Minus Query: 272 ccttggcgtcgtccttcttctcg 294 ||||||||||||||||||||||| Sbjct: 1432 ccttggcgtcgtccttcttctcg 1410
>gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4, complete sequence Length = 138187 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 168 ggactcgagaactcttcatccaatccaaac 197 ||||| ||||||||||||||| |||||||| Sbjct: 64167 ggactggagaactcttcatccgatccaaac 64196 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 168 ggactcgagaactcttcatccaatccaaac 197 ||||| ||||||||||||||| |||||||| Sbjct: 58033 ggactggagaactcttcatccgatccaaac 58062
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 168 ggactcgagaactcttcatccaatccaaac 197 ||||| ||||||||||||||| |||||||| Sbjct: 381620 ggactggagaactcttcatccgatccaaac 381649 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 168 ggactcgagaactcttcatccaatccaaac 197 ||||| ||||||||||||||| |||||||| Sbjct: 375486 ggactggagaactcttcatccgatccaaac 375515
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 gataataaaactatataaacat 44 |||||||||||||||||||||| Sbjct: 630581 gataataaaactatataaacat 630602
>gb|AF507073.2| Trypanosoma brucei vacuolar-type Ca2+-ATPase gene, complete cds Length = 15626 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 168 ggactcgagaactcttcatccaatccaaac 197 ||||| ||||||||||||||| |||||||| Sbjct: 15561 ggactggagaactcttcatccgatccaaac 15532
>gb|AF359561.1| Trypanosoma brucei vacuolar-type Ca2+-ATPase (TbA1) gene, complete cds Length = 5430 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 168 ggactcgagaactcttcatccaatccaaac 197 ||||| ||||||||||||||| |||||||| Sbjct: 5365 ggactggagaactcttcatccgatccaaac 5336
>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence Length = 338007 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 gcagctgcggccgtagccttgg 277 |||||||||||||||||||||| Sbjct: 102309 gcagctgcggccgtagccttgg 102330
>gb|AE014219.1| Streptococcus agalactiae 2603V/R section 29 of 100 of the complete genome Length = 22690 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 gataataaaactatataaacat 44 |||||||||||||||||||||| Sbjct: 1747 gataataaaactatataaacat 1768
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 cgacggcctccttgccgccggc 257 |||||||||||||||||||||| Sbjct: 293549 cgacggcctccttgccgccggc 293528
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 cgacggcctccttgccgccggc 257 |||||||||||||||||||||| Sbjct: 212435 cgacggcctccttgccgccggc 212414
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 cgacggcctccttgccgccggc 257 |||||||||||||||||||||| Sbjct: 36268 cgacggcctccttgccgccggc 36289
>emb|AL766846.1|SAG766846 Streptococcus agalactiae NEM316 complete genome, segment 4 Length = 224050 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 gataataaaactatataaacat 44 |||||||||||||||||||||| Sbjct: 54568 gataataaaactatataaacat 54589
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 23149543 gtgacccagatgaggagctccttggccttgacgccggt 23149506
>dbj|AK109434.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G11, full insert sequence Length = 960 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 410 gtgacccagatgaggagctccttggccttgacgccggt 373
>dbj|AK105895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E12, full insert sequence Length = 1044 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 405 gtgacccagatgaggagctccttggccttgacgccggt 368
>dbj|AK069514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020B07, full insert sequence Length = 1046 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 411 gtgacccagatgaggagctccttggccttgacgccggt 374
>dbj|AK060891.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C01, full insert sequence Length = 1001 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 412 gtgacccagatgaggagctccttggccttgacgccggt 375
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 23077734 gtgacccagatgaggagctccttggccttgacgccggt 23077697
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Plus Query: 388 gtgatccagatgaggagctccttgctcttgaccccggt 425 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 28854 gtgacccagatgaggagctccttggccttgacgccggt 28891
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ataataaaactatataaacat 44 ||||||||||||||||||||| Sbjct: 1692825 ataataaaactatataaacat 1692805
>ref|XM_653802.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1290.2), mRNA Length = 2652 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 gccttggcgtcgtccttcttc 291 ||||||||||||||||||||| Sbjct: 829 gccttggcgtcgtccttcttc 849
>gb|AC016687.5| Homo sapiens BAC clone RP11-79E3 from 4, complete sequence Length = 162371 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ataataaaactatataaacat 44 ||||||||||||||||||||| Sbjct: 19704 ataataaaactatataaacat 19684
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 18259 aaaactatataaaaatcatatgaa 18236
>ref|XM_417082.1| PREDICTED: Gallus gallus similar to Conserved oligomeric Golgi complex component 6 (LOC418888), mRNA Length = 4757 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gaaagagcagataataaaac 33 |||||||||||||||||||| Sbjct: 3330 gaaagagcagataataaaac 3349
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 73913 aaaactatataaaaatcatatgaa 73936
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tggactcgagaactcttcat 186 |||||||||||||||||||| Sbjct: 112329 tggactcgagaactcttcat 112310
>ref|XM_724269.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01580) partial mRNA Length = 4593 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 aaacagattatagaagatagtaat 151 ||||||| |||||||||||||||| Sbjct: 4243 aaacagaatatagaagatagtaat 4266
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 50336 aaaactatataaaaatcatatgaa 50313
>emb|AL034373.13|HS424L16 Human DNA sequence from clone RP3-424L16 on chromosome 6q12-13 Contains part of the RAB3IP2 gene for RAB3 interacting protein 2, complete sequence Length = 107484 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 atgaggagctccttgctctt 416 |||||||||||||||||||| Sbjct: 75436 atgaggagctccttgctctt 75417
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 27929 aaaactatataaaaatcatatgaa 27906
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 86230 aaaactatataaaaatcatatgaa 86207
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 gccttggcgtcgtccttcttctcg 294 |||| ||||||||||||||||||| Sbjct: 143293 gcctcggcgtcgtccttcttctcg 143270
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08, complete sequence Length = 157734 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 150805 aaaactatataaaaatcatatgaa 150782
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 44392 aaaactatataaaaatcatatgaa 44369
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 29241346 aaaactatataaaaatcatatgaa 29241323
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 20743275 aaaactatataaaaatcatatgaa 20743252
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 20080261 aaaactatataaaaatcatatgaa 20080284
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 8666753 aaaactatataaaaatcatatgaa 8666730
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 26472091 aaaactatataaaaatcatatgaa 26472114 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 8491279 aaaactatataaaaatcatatgaa 8491256
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 14289473 aaaactatataaaaatcatatgaa 14289450 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 2398313 aaaactatataaaaatcatatgaa 2398336
>gb|AY833361.1| Cottus poecilopus volki cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1073 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ttggcgtcgtccttcttctc 293 |||||||||||||||||||| Sbjct: 277 ttggcgtcgtccttcttctc 296
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 17362 aaaactatataaaaatcatatgaa 17385
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 96549 aaaactatataaaaatcatatgaa 96526
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0669H03 Length = 167878 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 23747 aaaactatataaaaatcatatgaa 23724
>dbj|AK119742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G05, full insert sequence Length = 3764 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ccttgtcgatgaacatgtcg 381 |||||||||||||||||||| Sbjct: 408 ccttgtcgatgaacatgtcg 389
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 122872 aaaactatataaaaatcatatgaa 122849
>gb|AF034101.2|AF034101 Streptomyces coelicolor ribosomal protein S2 (rpsB) and elongation factor Ts (tsf) genes, complete cds Length = 2162 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 gccttggcgtcgtccttcttctcg 294 |||| ||||||||||||||||||| Sbjct: 991 gcctcggcgtcgtccttcttctcg 968
>emb|BX957244.15| Zebrafish DNA sequence from clone CH211-13C6 in linkage group 19, complete sequence Length = 162321 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 taaaactatataaacatcat 47 |||||||||||||||||||| Sbjct: 137781 taaaactatataaacatcat 137800
>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence Length = 181287 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 taataaaactatataaacat 44 |||||||||||||||||||| Sbjct: 40305 taataaaactatataaacat 40324
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 20091537 aaaactatataaaaatcatatgaa 20091560
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 aaaactatataaacatcatatgaa 52 ||||||||||||| |||||||||| Sbjct: 21053510 aaaactatataaaaatcatatgaa 21053487
>emb|BX005329.9| Zebrafish DNA sequence from clone DKEY-222F2, complete sequence Length = 186928 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 aataaaactatataaacatc 45 |||||||||||||||||||| Sbjct: 14563 aataaaactatataaacatc 14582
>emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chromosome 2, complete sequence Length = 200364 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 taaaactatataaacatcat 47 |||||||||||||||||||| Sbjct: 51887 taaaactatataaacatcat 51906 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,082,492 Number of Sequences: 3902068 Number of extensions: 3082492 Number of successful extensions: 60623 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60101 Number of HSP's gapped (non-prelim): 522 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
