ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24k12 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 69.3 bits (168), Expect(2) = 2e-21 Identities = 35/46 (76%), Positives = 39/46 (84%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + L +KFIP VIGKEIEKATSSIFPLQNV+VRKVKILK P+ GK Sbjct: 181 KELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGK 226 Score = 51.2 bits (121), Expect(2) = 2e-21 Identities = 24/30 (80%), Positives = 26/30 (86%), Gaps = 1/30 (3%) Frame = -3 Query: 100 PKFDLGKLMEVHGNY-KEDVGVKLDRPDVD 14 PKFDLGKLMEVHG+Y KED+G KLDRP D Sbjct: 220 PKFDLGKLMEVHGDYAKEDIGTKLDRPAED 249
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 63.5 bits (153), Expect(2) = 1e-20 Identities = 31/46 (67%), Positives = 37/46 (80%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + L KFIP IG+EIEKATSSI+PLQNV++RKVKILK P+ GK Sbjct: 181 KELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGK 226 Score = 54.3 bits (129), Expect(2) = 1e-20 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYKEDVGVKLDRP 23 PKFD+GKLMEVHG+Y EDVGVKLDRP Sbjct: 220 PKFDIGKLMEVHGDYSEDVGVKLDRP 245
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 63.5 bits (153), Expect(2) = 1e-20 Identities = 31/46 (67%), Positives = 37/46 (80%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + L KFIP IG+EIEKATSSI+PLQNV++RKVKILK P+ GK Sbjct: 181 KDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGK 226 Score = 53.9 bits (128), Expect(2) = 1e-20 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYKEDVGVKLDRPDVDGV 8 PKFDLGKLMEVHG+Y ED+G KLDRP + V Sbjct: 220 PKFDLGKLMEVHGDYNEDIGTKLDRPAEEAV 250
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 61.6 bits (148), Expect(2) = 1e-18 Identities = 29/46 (63%), Positives = 35/46 (76%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + L KFIP IG+EIEKAT I+PLQNV++RKVKILK P+ GK Sbjct: 181 KELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGK 226 Score = 48.9 bits (115), Expect(2) = 1e-18 Identities = 23/27 (85%), Positives = 25/27 (92%), Gaps = 1/27 (3%) Frame = -3 Query: 100 PKFDLGKLMEVHGNY-KEDVGVKLDRP 23 PKFDLGKLMEVHG+Y EDVGVK+DRP Sbjct: 220 PKFDLGKLMEVHGDYTAEDVGVKVDRP 246
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 59.7 bits (143), Expect(2) = 4e-17 Identities = 27/41 (65%), Positives = 33/41 (80%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 + L KFIP IGK+IEKAT I+PLQNV++RKVKILK P+ Sbjct: 182 KELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPK 222 Score = 45.8 bits (107), Expect(2) = 4e-17 Identities = 22/27 (81%), Positives = 24/27 (88%), Gaps = 1/27 (3%) Frame = -3 Query: 100 PKFDLGKLMEVHGNY-KEDVGVKLDRP 23 PKFDL KLMEVHG+Y EDVGVK+DRP Sbjct: 221 PKFDLRKLMEVHGDYTAEDVGVKVDRP 247
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 48.9 bits (115), Expect(2) = 2e-12 Identities = 24/42 (57%), Positives = 32/42 (76%), Gaps = 1/42 (2%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSS-IFPLQNVYVRKVKILKGPE 96 + L KFIP VIGKEI++ S I+PLQ+ ++RKVKILK P+ Sbjct: 178 KELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPK 219 Score = 40.8 bits (94), Expect(2) = 2e-12 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYKEDVGVKL 32 PKFDL KLMEVHG+Y E+VG K+ Sbjct: 218 PKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 60.8 bits (146), Expect(2) = 1e-11 Identities = 30/41 (73%), Positives = 33/41 (80%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 R L K IP VIG+EIE+AT SIFPLQNV VRKVKILK P+ Sbjct: 181 RELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPK 221 Score = 26.6 bits (57), Expect(2) = 1e-11 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYKEDVGVKL 32 PK D KL+E+HG +DVG K+ Sbjct: 220 PKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 52.8 bits (125), Expect(2) = 5e-11 Identities = 26/46 (56%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 32.3 bits (72), Expect(2) = 5e-11 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 9/36 (25%) Frame = -3 Query: 100 PKFDLGKLMEVHGN---------YKEDVGVKLDRPD 20 PKF+LGKLME+HG +D G K++R D Sbjct: 220 PKFELGKLMELHGEGGAGTAAKATGDDTGAKVERAD 255
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 52.4 bits (124), Expect(2) = 6e-11 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP +GK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 32.3 bits (72), Expect(2) = 6e-11 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 9/36 (25%) Frame = -3 Query: 100 PKFDLGKLMEVHGN---------YKEDVGVKLDRPD 20 PKF+LGKLME+HG +D G K++R D Sbjct: 220 PKFELGKLMELHGEGGAGGAAKASGDDTGAKVERAD 255
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 52.8 bits (125), Expect(2) = 8e-11 Identities = 26/46 (56%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 8e-11 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGN-------YKEDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGGGAGKPAGDETGAKVERAD 253
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 52.8 bits (125), Expect(2) = 8e-11 Identities = 26/46 (56%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 8e-11 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGN-------YKEDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGGGTGKPAGDETGAKVERAD 253
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 52.8 bits (125), Expect(2) = 8e-11 Identities = 26/46 (56%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 8e-11 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGN-------YKEDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGGGSGKPSGDETGAKVERAD 253
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 52.8 bits (125), Expect(2) = 8e-11 Identities = 26/46 (56%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 8e-11 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGN-------YKEDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGGGAGKPSGDEAGAKVERAD 253
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 52.4 bits (124), Expect(2) = 1e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP +GK+IEKA SI+PL +VYVRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 1e-10 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 10/37 (27%) Frame = -3 Query: 100 PKFDLGKLMEVHGN----------YKEDVGVKLDRPD 20 PKF+LGKLME+HG + D G K++R D Sbjct: 220 PKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERAD 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 58.2 bits (139), Expect(2) = 1e-10 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 + L K IP VIG+ IEKAT++I+PLQNV+VRKVKILK P+ Sbjct: 181 KELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPK 221 Score = 25.8 bits (55), Expect(2) = 1e-10 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYKEDVGVKL 32 PK D KL+E+HG +DVG K+ Sbjct: 220 PKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 51.2 bits (121), Expect(2) = 2e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK 226 Score = 32.0 bits (71), Expect(2) = 2e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYK-------EDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 51.2 bits (121), Expect(2) = 2e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK 226 Score = 32.0 bits (71), Expect(2) = 2e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYK-------EDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 51.2 bits (121), Expect(2) = 2e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK 226 Score = 32.0 bits (71), Expect(2) = 2e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYK-------EDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 51.2 bits (121), Expect(2) = 2e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 178 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK 223 Score = 32.0 bits (71), Expect(2) = 2e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYK-------EDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 217 PKFELGKLMELHGEGSSSGKATGDETGAKVERAD 250
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 55.8 bits (133), Expect(2) = 2e-10 Identities = 25/48 (52%), Positives = 35/48 (72%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGKAH 75 + + +K IP IGK+IEK S ++PLQ VY+RKVKI+K P+V G+ H Sbjct: 179 KEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLH 226 Score = 27.3 bits (59), Expect(2) = 2e-10 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = -3 Query: 100 PKFDLGKLMEVHGN--YKEDVGVKLDRPD 20 PK DLG+L ++HG+ G K+DRPD Sbjct: 218 PKVDLGRLHDLHGDSITVGADGEKVDRPD 246
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 51.2 bits (121), Expect(2) = 2e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 2e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHG-------NYKEDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGGSSGKTTGDETGAKVERAD 253
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 51.2 bits (121), Expect(2) = 2e-10 Identities = 25/46 (54%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK 226 Score = 31.6 bits (70), Expect(2) = 2e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGN-------YKEDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGGSSGKAAGDETGAKVERAD 253
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 50.1 bits (118), Expect(2) = 4e-10 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK++EKA SI+PL +V+VRKVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGK 226 Score = 32.0 bits (71), Expect(2) = 4e-10 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%) Frame = -3 Query: 100 PKFDLGKLMEVHGNYK-------EDVGVKLDRPD 20 PKF+LGKLME+HG ++ G K++R D Sbjct: 220 PKFELGKLMELHGEGSSSGKATGDETGAKVERAD 253
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 58.2 bits (139), Expect(2) = 5e-10 Identities = 26/39 (66%), Positives = 34/39 (87%) Frame = -2 Query: 212 LXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 L +K IP VIG+EIEK+T +IFPLQNV++RKVK+LK P+ Sbjct: 183 LTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPK 221 Score = 23.5 bits (49), Expect(2) = 5e-10 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -3 Query: 100 PKFDLGKLMEVHG-NYKEDVGVKLDRPDVDGVI 5 PKFD G L+ +HG E+ G K+ D V+ Sbjct: 220 PKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 55.8 bits (133), Expect(2) = 8e-10 Identities = 26/39 (66%), Positives = 31/39 (79%) Frame = -2 Query: 212 LXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 L +K IP VI KEIE AT IFPLQN++VRKVK+LK P+ Sbjct: 183 LTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPK 221 Score = 25.0 bits (53), Expect(2) = 8e-10 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 100 PKFDLGKLMEVHG 62 PKFD+G LM +HG Sbjct: 220 PKFDVGALMALHG 232
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 55.8 bits (133), Expect(2) = 8e-10 Identities = 26/39 (66%), Positives = 31/39 (79%) Frame = -2 Query: 212 LXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 L +K IP VI KEIE AT IFPLQN++VRKVK+LK P+ Sbjct: 183 LTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPK 221 Score = 25.0 bits (53), Expect(2) = 8e-10 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 100 PKFDLGKLMEVHG 62 PKFD+G LM +HG Sbjct: 220 PKFDVGALMALHG 232
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 45.8 bits (107), Expect(2) = 9e-09 Identities = 21/46 (45%), Positives = 30/46 (65%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGPEV*PGK 81 + + K IP IGK+IEK+ I+PL +V + KVK+LK P+ GK Sbjct: 181 KEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGK 226 Score = 31.6 bits (70), Expect(2) = 9e-09 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 8/41 (19%) Frame = -3 Query: 100 PKFDLGKLMEVHG--------NYKEDVGVKLDRPDVDGVIP 2 PKFD+GKLME+HG + G K+DR VDG P Sbjct: 220 PKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDR--VDGYEP 258
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 45.4 bits (106), Expect(2) = 5e-07 Identities = 19/40 (47%), Positives = 28/40 (70%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGP 99 + + K +P I K+IEKA ++PL +VY+RKVK+LK P Sbjct: 184 KGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKP 223 Score = 25.8 bits (55), Expect(2) = 5e-07 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -3 Query: 100 PKFDLGKLMEVHGN 59 P+FDL LME+HG+ Sbjct: 223 PRFDLSSLMELHGD 236
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 41.6 bits (96), Expect(2) = 6e-06 Identities = 19/40 (47%), Positives = 26/40 (65%) Frame = -2 Query: 218 RSLXTKFIPXVIGKEIEKATSSIFPLQNVYVRKVKILKGP 99 + L K I K+IEK+ I+PL +VY+RKVK+LK P Sbjct: 184 KQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKP 223 Score = 26.2 bits (56), Expect(2) = 6e-06 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 8/35 (22%) Frame = -3 Query: 100 PKFDLGKLMEVHGN--------YKEDVGVKLDRPD 20 P+FD+ KL+E+HG+ G +DRP+ Sbjct: 223 PRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPE 257
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 32.3 bits (72), Expect = 0.34 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 185 IGKEIEKATSSIFPLQNVYVRKVKILKGPEV 93 I EI K I+PL+ +RK+K+L PEV Sbjct: 167 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPEV 197
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 32.3 bits (72), Expect = 0.34 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 185 IGKEIEKATSSIFPLQNVYVRKVKILKGPEV 93 I EI K I+PL+ +RK+K+L+ P+V Sbjct: 166 IAAEIAKEAKKIYPLRKAEIRKIKVLEEPQV 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 185 IGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 I EI K I+PL+ +RK+K+L PE Sbjct: 168 IAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 185 IGKEIEKATSSIFPLQNVYVRKVKILKGPE 96 + EI +A I+PL+ + K K+LK PE Sbjct: 165 LANEIFEAAKKIYPLRKAEIEKTKVLKVPE 194
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 28.9 bits (63), Expect = 3.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 185 IGKEIEKATSSIFPLQNVYVRKVKILKGP 99 I EI K I+P++ VRK+K+L P Sbjct: 170 IASEIAKEARKIYPIKRAEVRKIKVLAEP 198
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -2 Query: 185 IGKEIEKATSSIFPLQNVYVRKVKILKGPEV 93 + +I + I+PL+ V + K K+LK P+V Sbjct: 167 LSNDIFQEAKKIYPLRKVEIEKTKLLKAPKV 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,737,980 Number of Sequences: 219361 Number of extensions: 530234 Number of successful extensions: 1717 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1712 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
