ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24k09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ581660.1|HVU581660 Hordeum vulgare chloroplast partial mRN... 743 0.0
2emb|AJ250662.1|HVU250662 Hordeum vulgare partial mRNA for putati... 561 e-157
3gb|DQ428850.1| Sorghum bicolor voucher PI585454 locus pSB0108 ge... 244 2e-61
4gb|DQ428849.1| Sorghum bicolor voucher PI267408 locus pSB0108 ge... 244 2e-61
5gb|DQ428848.1| Sorghum bicolor voucher PI221607 locus pSB0108 ge... 244 2e-61
6gb|DQ428847.1| Sorghum bicolor voucher PI152702 locus pSB0108 ge... 244 2e-61
7gb|DQ428846.1| Sorghum bicolor voucher NSL92371 locus pSB0108 ge... 244 2e-61
8gb|DQ428845.1| Sorghum bicolor voucher NSL87666 locus pSB0108 ge... 244 2e-61
9gb|DQ428844.1| Sorghum bicolor voucher NSL77217 locus pSB0108 ge... 244 2e-61
10gb|DQ428843.1| Sorghum bicolor voucher NSL77034 locus pSB0108 ge... 244 2e-61
11gb|DQ428842.1| Sorghum bicolor voucher NSL56174 locus pSB0108 ge... 244 2e-61
12gb|DQ428841.1| Sorghum bicolor voucher NSL56003 locus pSB0108 ge... 244 2e-61
13gb|DQ428840.1| Sorghum bicolor voucher NSL55243 locus pSB0108 ge... 244 2e-61
14gb|DQ428839.1| Sorghum bicolor voucher NSL51365 locus pSB0108 ge... 244 2e-61
15gb|DQ428838.1| Sorghum bicolor voucher NSL51030 locus pSB0108 ge... 244 2e-61
16gb|DQ428837.1| Sorghum bicolor voucher NSL50875 locus pSB0108 ge... 244 2e-61
17gb|DQ428836.1| Sorghum bicolor voucher BTx623 locus pSB0108 geno... 244 2e-61
18gb|DQ428851.1| Sorghum propinquum locus pSB0108 genomic sequence 236 4e-59
19ref|XM_483478.1| Oryza sativa (japonica cultivar-group), mRNA 212 6e-52
20dbj|AK061879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 6e-52
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 212 6e-52
22dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic D... 212 6e-52
23dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 212 6e-52
24dbj|AK072408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 6e-52
25gb|AY107847.1| Zea mays PCO116807 mRNA sequence 212 6e-52
26gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ... 64 4e-07
27gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
28dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
29dbj|AK106533.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
30dbj|AK102346.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
31dbj|AK073291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
32gb|BT014518.1| Lycopersicon esculentum clone 133908F, mRNA sequence 52 0.001
33gb|AC158193.2| Selaginella moellendorffii clone JGIASXY-5P19, co... 48 0.022
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
35emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in... 42 1.4
36gb|AC092048.2| Homo sapiens chromosome 3 clone RP11-241P3, compl... 42 1.4
37gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
38gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
40gb|AC006060.1| Homo sapiens 3 PAC RPCI4-736H12 (Roswell Park Can... 42 1.4
41dbj|AK101976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
42dbj|AK063756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
43gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.4
44ref|NM_124422.2| Arabidopsis thaliana hydrolase/ protein serine/... 40 5.4
45gb|AY842027.1| Arabidopsis thaliana putative purple acid phospha... 40 5.4
46ref|XM_592083.2| PREDICTED: Bos taurus similar to COP9 signaloso... 40 5.4
47ref|XM_611709.2| PREDICTED: Bos taurus similar to COP9 signaloso... 40 5.4
48gb|AC008951.6| Homo sapiens chromosome 5 clone CTD-2337A12, comp... 40 5.4
49dbj|AK159352.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 5.4
50gb|AC151472.2| Mus musculus BAC clone RP23-407N2 from chromosome... 40 5.4
51dbj|AB012248.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.4
52emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 40 5.4 
>emb|AJ581660.1|HVU581660 Hordeum vulgare chloroplast partial mRNA for nucleotide
            pyrophosphatase/phosphodiesterase (npp gene)
          Length = 1268

 Score =  743 bits (375), Expect = 0.0
 Identities = 391/394 (99%), Gaps = 2/394 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    aacccataataatatgacatgnaggcagttacaaagncatatataacgagcatacaccca 67
            ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct: 1243 aacccataataatatgacatgaagg-agttacaaag-catatataacgagcatacaccca 1186

                                                                        
Query: 68   cctcttgcatgatctttttactagcacatataaattgtgcagctgaccaattttattact 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 cctcttgcatgatctttttactagcacatataaattgtgcagctgaccaattttattact 1126

                                                                        
Query: 128  caacacatgcccacaattttattggatggatgaccctccattacattgacatgacggccg 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 caacacatgcccacaattttattggatggatgaccctccattacattgacatgacggccg 1066

                                                                        
Query: 188  gacgatatgagctagctagcgagcgtggtggggaagcagctgtcgtgcacgcagctgagc 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 gacgatatgagctagctagcgagcgtggtggggaagcagctgtcgtgcacgcagctgagc 1006

                                                                        
Query: 248  acgtcgcggtaatccctgtggatggtgaaggagtcgtagaccttgccgtcgctgctcttc 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 acgtcgcggtaatccctgtggatggtgaaggagtcgtagaccttgccgtcgctgctcttc 946

                                                                        
Query: 308  atgtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtca 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  atgtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtca 886

                                              
Query: 368  tggtccctgaatatgctccacttggggatggcgg 401
            ||||||||||||||||||||||||||||||||||
Sbjct: 885  tggtccctgaatatgctccacttggggatggcgg 852
to top
>emb|AJ250662.1|HVU250662 Hordeum vulgare partial mRNA for putative protein (bci-6 gene)
          Length = 321

 Score =  561 bits (283), Expect = e-157
 Identities = 300/304 (98%), Gaps = 2/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   aacccataataatatgacatgnaggcagttacaaagncatatataacgagcatacaccca 67
           ||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct: 302 aacccataawaatatgacatgaagg-agttacaaag-catatataacgagcatacaccca 245

                                                                       
Query: 68  cctcttgcatgatctttttactagcacatataaattgtgcagctgaccaattttattact 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cctcttgcatgatctttttactagcacatataaattgtgcagctgaccaattttattact 185

                                                                       
Query: 128 caacacatgcccacaattttattggatggatgaccctccattacattgacatgacggccg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caacacatgcccacaattttattggatggatgaccctccattacattgacatgacggccg 125

                                                                       
Query: 188 gacgatatgagctagctagcgagcgtggtggggaagcagctgtcgtgcacgcagctgagc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gacgatatgagctagctagcgagcgtggtggggaagcagctgtcgtgcacgcagctgagc 65

                                                                       
Query: 248 acgtcgcggtaatccctgtggatggtgaaggagtcgtagaccttgccgtcgctgctcttc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  acgtcgcggtaatccctgtggatggtgaaggagtcgtagaccttgccgtcgctgctcttc 5

               
Query: 308 atgt 311
           ||||
Sbjct: 4   atgt 1
to top
>gb|DQ428850.1| Sorghum bicolor voucher PI585454 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428849.1| Sorghum bicolor voucher PI267408 locus pSB0108 genomic sequence
          Length = 560

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 464 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 405

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 404 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 345

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 344 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 285

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 284 cacttggggat 274
to top
>gb|DQ428848.1| Sorghum bicolor voucher PI221607 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428847.1| Sorghum bicolor voucher PI152702 locus pSB0108 genomic sequence
          Length = 545

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 449 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 390

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 389 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 330

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 329 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 270

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 269 cacttggggat 259
to top
>gb|DQ428846.1| Sorghum bicolor voucher NSL92371 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428845.1| Sorghum bicolor voucher NSL87666 locus pSB0108 genomic sequence
          Length = 554

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 458 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 399

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 398 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 339

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 338 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 279

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 278 cacttggggat 268
to top
>gb|DQ428844.1| Sorghum bicolor voucher NSL77217 locus pSB0108 genomic sequence
          Length = 545

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 449 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 390

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 389 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 330

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 329 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 270

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 269 cacttggggat 259
to top
>gb|DQ428843.1| Sorghum bicolor voucher NSL77034 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428842.1| Sorghum bicolor voucher NSL56174 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428841.1| Sorghum bicolor voucher NSL56003 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428840.1| Sorghum bicolor voucher NSL55243 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428839.1| Sorghum bicolor voucher NSL51365 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428838.1| Sorghum bicolor voucher NSL51030 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428837.1| Sorghum bicolor voucher NSL50875 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428836.1| Sorghum bicolor voucher BTx623 locus pSB0108 genomic sequence
          Length = 541

 Score =  244 bits (123), Expect = 2e-61
 Identities = 174/191 (91%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 445 gcgagcgttgtcgggaagcagctgtcgtgcacgcaccggagcacgtcgcggtagtccctg 386

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 326

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 325 gacgagtggttgaacgccgtgagcttcgtgaagccgaagtcatggtcgcggtagatgctc 266

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 265 cacttggggat 255
to top
>gb|DQ428851.1| Sorghum propinquum locus pSB0108 genomic sequence
          Length = 704

 Score =  236 bits (119), Expect = 4e-59
 Identities = 173/191 (90%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           |||||||| || ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 480 gcgagcgttgtcgggaagcagctgtcgtgcacgcatcggagcacgtcgcggtagtccctg 421

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 420 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaacagcagc 361

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || || ||||| ||||| ||| |||||||||| | | | ||||||
Sbjct: 360 gacgagtggttgaacgccgtcagcttcgtgaagccgaagtcatggtcgcggtagatgctc 301

                      
Query: 386 cacttggggat 396
           |||||||||||
Sbjct: 300 cacttggggat 290
to top
>ref|XM_483478.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2234

 Score =  212 bits (107), Expect = 6e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                        
Query: 206  gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1903 gcgagcgtggtggggaggcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctc 1844

                                                                        
Query: 266  tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
            |  | |||||||||||| || ||||| || |||||||||||| |||||||||| || |||
Sbjct: 1843 tccacggtgaaggagtcatacaccttcccatcgctgctcttcttgtactcgaacagcagc 1784

                                                                        
Query: 326  gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
            || ||||||||||| ||||||||||||  ||||||| ||||  |||||||||| | ||||
Sbjct: 1783 gacgagtggttgaacgcggtgagcttgacgaacccgaagtcccggtccctgaaaacgctc 1724

                       
Query: 386  cacttggggat 396
            |||||||||||
Sbjct: 1723 cacttggggat 1713
to top
>dbj|AK061879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E10, full
            insert sequence
          Length = 1355

 Score =  212 bits (107), Expect = 6e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                        
Query: 206  gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1074 gcgagcgtggtggggaggcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctc 1015

                                                                        
Query: 266  tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
            |  | |||||||||||| || ||||| || |||||||||||| |||||||||| || |||
Sbjct: 1014 tccacggtgaaggagtcatacaccttcccatcgctgctcttcttgtactcgaacagcagc 955

                                                                        
Query: 326  gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
            || ||||||||||| ||||||||||||  ||||||| ||||  |||||||||| | ||||
Sbjct: 954  gacgagtggttgaacgcggtgagcttgacgaacccgaagtcccggtccctgaaaacgctc 895

                       
Query: 386  cacttggggat 396
            |||||||||||
Sbjct: 894  cacttggggat 884
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  212 bits (107), Expect = 6e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                            
Query: 206      gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
                |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 26437900 gcgagcgtggtggggaggcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctc 26437841

                                                                            
Query: 266      tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
                |  | |||||||||||| || ||||| || |||||||||||| |||||||||| || |||
Sbjct: 26437840 tccacggtgaaggagtcatacaccttcccatcgctgctcttcttgtactcgaacagcagc 26437781

                                                                            
Query: 326      gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
                || ||||||||||| ||||||||||||  ||||||| ||||  |||||||||| | ||||
Sbjct: 26437780 gacgagtggttgaacgcggtgagcttgacgaacccgaagtcccggtccctgaaaacgctc 26437721

                           
Query: 386      cacttggggat 396
                |||||||||||
Sbjct: 26437720 cacttggggat 26437710
to top
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1789_C07
          Length = 138944

 Score =  212 bits (107), Expect = 6e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                         
Query: 206   gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 87452 gcgagcgtggtggggaggcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctc 87393

                                                                         
Query: 266   tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
             |  | |||||||||||| || ||||| || |||||||||||| |||||||||| || |||
Sbjct: 87392 tccacggtgaaggagtcatacaccttcccatcgctgctcttcttgtactcgaacagcagc 87333

                                                                         
Query: 326   gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
             || ||||||||||| ||||||||||||  ||||||| ||||  |||||||||| | ||||
Sbjct: 87332 gacgagtggttgaacgcggtgagcttgacgaacccgaagtcccggtccctgaaaacgctc 87273

                        
Query: 386   cacttggggat 396
             |||||||||||
Sbjct: 87272 cacttggggat 87262
to top
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1770_H02
          Length = 170648

 Score =  212 bits (107), Expect = 6e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                          
Query: 206    gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
              |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 167481 gcgagcgtggtggggaggcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctc 167422

                                                                          
Query: 266    tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
              |  | |||||||||||| || ||||| || |||||||||||| |||||||||| || |||
Sbjct: 167421 tccacggtgaaggagtcatacaccttcccatcgctgctcttcttgtactcgaacagcagc 167362

                                                                          
Query: 326    gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
              || ||||||||||| ||||||||||||  ||||||| ||||  |||||||||| | ||||
Sbjct: 167361 gacgagtggttgaacgcggtgagcttgacgaacccgaagtcccggtccctgaaaacgctc 167302

                         
Query: 386    cacttggggat 396
              |||||||||||
Sbjct: 167301 cacttggggat 167291
to top
>dbj|AK072408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083H19, full
            insert sequence
          Length = 2233

 Score =  212 bits (107), Expect = 6e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                        
Query: 206  gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1902 gcgagcgtggtggggaggcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctc 1843

                                                                        
Query: 266  tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
            |  | |||||||||||| || ||||| || |||||||||||| |||||||||| || |||
Sbjct: 1842 tccacggtgaaggagtcatacaccttcccatcgctgctcttcttgtactcgaacagcagc 1783

                                                                        
Query: 326  gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
            || ||||||||||| ||||||||||||  ||||||| ||||  |||||||||| | ||||
Sbjct: 1782 gacgagtggttgaacgcggtgagcttgacgaacccgaagtcccggtccctgaaaacgctc 1723

                       
Query: 386  cacttggggat 396
            |||||||||||
Sbjct: 1722 cacttggggat 1712
to top
>gb|AY107847.1| Zea mays PCO116807 mRNA sequence
          Length = 1174

 Score =  212 bits (107), Expect = 6e-52
 Identities = 174/195 (89%), Gaps = 1/195 (0%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcgagcgtggtggggaagcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctg 265
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 883 gcgagcgtggtggggaagcagctgtcgtgcacgcatctgagcacgtcgcggtagtccctg 824

                                                                       
Query: 266 tggatggtgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaagagaagc 325
           | |||||||||||||||||||||||||| ||||||||||||| |||||||||| || |||
Sbjct: 823 tcgatggtgaaggagtcgtagaccttgctgtcgctgctcttcttgtactcgaacagcagc 764

                                                                       
Query: 326 gaggagtggttgaatgcggtgagcttggtgaacccgtagtcatggtccctgaatatgctc 385
           || ||||||||||| || |||||||||  ||| ||| |||| | ||| | | | ||||||
Sbjct: 763 gacgagtggttgaaggccgtgagcttgacgaagccgaagtcgtagtcgcggtagatgctc 704

                          
Query: 386 c-acttggggatggc 399
           | |||||||||||||
Sbjct: 703 ccacttggggatggc 689
to top
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
            OSJNBa0072P02, complete sequence
          Length = 157488

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                        
Query: 223  gcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctgtggatggtgaaggagtc 282
            ||||||||||   ||||||  ||||||||||||||| |||| ||||| |||||||  |||
Sbjct: 5906 gcagctgtcggcgacgcaggcgagcacgtcgcggtactcccggtggacggtgaagctgtc 5965

                                                                        
Query: 283  gtagaccttgccgtcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgc 342
            ||  |||| ||||||||||  |  | |||||||| |||| ||||| | || |||||| ||
Sbjct: 5966 gtgcacctcgccgtcgctggaccgcctgtactcgtagagcagcgacgtgtagttgaacgc 6025

                                    
Query: 343  ggtgagcttggtgaacccgtagtc 366
             |||||||||  ||| ||||||||
Sbjct: 6026 cgtgagcttgacgaagccgtagtc 6049
to top
>gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0010B06, complete sequence
          Length = 129310

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                         
Query: 223   gcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctgtggatggtgaaggagtc 282
             ||||||||||   ||||||  ||||||||||||||| |||| ||||| |||||||  |||
Sbjct: 69896 gcagctgtcggcgacgcaggcgagcacgtcgcggtactcccggtggacggtgaagctgtc 69955

                                                                         
Query: 283   gtagaccttgccgtcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgc 342
             ||  |||| ||||||||||  |  | |||||||| |||| ||||| | || |||||| ||
Sbjct: 69956 gtgcacctcgccgtcgctggaccgcctgtactcgtagagcagcgacgtgtagttgaacgc 70015

                                     
Query: 343   ggtgagcttggtgaacccgtagtc 366
              |||||||||  ||| ||||||||
Sbjct: 70016 cgtgagcttgacgaagccgtagtc 70039
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                            
Query: 223      gcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctgtggatggtgaaggagtc 282
                ||||||||||   ||||||  ||||||||||||||| |||| ||||| |||||||  |||
Sbjct: 19286680 gcagctgtcggcgacgcaggcgagcacgtcgcggtactcccggtggacggtgaagctgtc 19286739

                                                                            
Query: 283      gtagaccttgccgtcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgc 342
                ||  |||| ||||||||||  |  | |||||||| |||| ||||| | || |||||| ||
Sbjct: 19286740 gtgcacctcgccgtcgctggaccgcctgtactcgtagagcagcgacgtgtagttgaacgc 19286799

                                        
Query: 343      ggtgagcttggtgaacccgtagtc 366
                 |||||||||  ||| ||||||||
Sbjct: 19286800 cgtgagcttgacgaagccgtagtc 19286823
to top
>dbj|AK106533.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A11, full
            insert sequence
          Length = 2322

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 116/144 (80%)
 Strand = Plus / Minus

                                                                        
Query: 223  gcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctgtggatggtgaaggagtc 282
            ||||||||||   ||||||  ||||||||||||||| |||| ||||| |||||||  |||
Sbjct: 2138 gcagctgtcggcgacgcaggcgagcacgtcgcggtactcccggtggacggtgaagctgtc 2079

                                                                        
Query: 283  gtagaccttgccgtcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgc 342
            ||  |||| ||||||||||  |  | |||||||| |||| ||||| | || |||||| ||
Sbjct: 2078 gtgcacctcgccgtcgctggaccgcctgtactcgtagagcagcgacgtgtagttgaacgc 2019

                                    
Query: 343  ggtgagcttggtgaacccgtagtc 366
             |||||||||  ||| ||||||||
Sbjct: 2018 cgtgagcttgacgaagccgtagtc 1995
to top
>dbj|AK102346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091C10, full
            insert sequence
          Length = 2294

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 116/144 (80%)
 Strand = Plus / Minus

                                                                        
Query: 223  gcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctgtggatggtgaaggagtc 282
            ||||||||||   ||||||  ||||||||||||||| |||| ||||| |||||||  |||
Sbjct: 2112 gcagctgtcggcgacgcaggcgagcacgtcgcggtactcccggtggacggtgaagctgtc 2053

                                                                        
Query: 283  gtagaccttgccgtcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgc 342
            ||  |||| ||||||||||  |  | |||||||| |||| ||||| | || |||||| ||
Sbjct: 2052 gtgcacctcgccgtcgctggaccgcctgtactcgtagagcagcgacgtgtagttgaacgc 1993

                                    
Query: 343  ggtgagcttggtgaacccgtagtc 366
             |||||||||  ||| ||||||||
Sbjct: 1992 cgtgagcttgacgaagccgtagtc 1969
to top
>dbj|AK073291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024B14, full
            insert sequence
          Length = 1832

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 116/144 (80%)
 Strand = Plus / Minus

                                                                        
Query: 223  gcagctgtcgtgcacgcagctgagcacgtcgcggtaatccctgtggatggtgaaggagtc 282
            ||||||||||   ||||||  ||||||||||||||| |||| ||||| |||||||  |||
Sbjct: 1650 gcagctgtcggcgacgcaggcgagcacgtcgcggtactcccggtggacggtgaagctgtc 1591

                                                                        
Query: 283  gtagaccttgccgtcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgc 342
            ||  |||| ||||||||||  |  | |||||||| |||| ||||| | || |||||| ||
Sbjct: 1590 gtgcacctcgccgtcgctggaccgcctgtactcgtagagcagcgacgtgtagttgaacgc 1531

                                    
Query: 343  ggtgagcttggtgaacccgtagtc 366
             |||||||||  ||| ||||||||
Sbjct: 1530 cgtgagcttgacgaagccgtagtc 1507
to top
>gb|BT014518.1| Lycopersicon esculentum clone 133908F, mRNA sequence
          Length = 2371

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 273  tgaaggagtcgtagaccttgccgtcgctgctcttcatgtactcgaa 318
            |||| |||||||| || ||||| |||||||||||| ||||||||||
Sbjct: 1977 tgaaagagtcgtacactttgccatcgctgctcttcttgtactcgaa 1932
to top
>gb|AC158193.2| Selaginella moellendorffii clone JGIASXY-5P19, complete sequence
          Length = 29585

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                        
Query: 296  tcgctgctcttcatgtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtg 355
            |||| ||||||| |||||||||| || ||||| ||| | ||||| | |||||||||||||
Sbjct: 5127 tcgcggctcttcttgtactcgaacagcagcgacgagcgattgaacgaggtgagcttggtg 5186
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                        
Query: 310     gtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtc 366
               ||||||||| || ||||  | ||||||||| || || ||||||| ||||||||||||
Sbjct: 5947132 gtactcgaacagcagcgccgtgtggttgaaggccgtcagcttggcgaacccgtagtc 5947076
to top
>emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in linkage group 3,
             complete sequence
          Length = 151079

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    tttttactagcacatataaat 102
             |||||||||||||||||||||
Sbjct: 12435 tttttactagcacatataaat 12415
to top
>gb|AC092048.2| Homo sapiens chromosome 3 clone RP11-241P3, complete sequence
          Length = 155663

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 131    cacatgcccacaattttattggatg 155
              ||||||||||||||||| |||||||
Sbjct: 148874 cacatgcccacaatttttttggatg 148898
to top
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0085F02, complete sequence
          Length = 128535

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 310   gtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtc 366
             ||||||||| || ||||  | ||||||||| || || ||||||| ||||||||||||
Sbjct: 96754 gtactcgaacagcagcgccgtgtggttgaaggccgtcagcttggcgaacccgtagtc 96698
to top
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
            complete sequence
          Length = 111961

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 310  gtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtc 366
            ||||||||| || ||||  | ||||||||| || || ||||||| ||||||||||||
Sbjct: 5667 gtactcgaacagcagcgccgtgtggttgaaggccgtcagcttggcgaacccgtagtc 5611
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                        
Query: 310     gtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtc 366
               ||||||||| || ||||  | ||||||||| || || ||||||| ||||||||||||
Sbjct: 5946345 gtactcgaacagcagcgccgtgtggttgaaggccgtcagcttggcgaacccgtagtc 5946289
to top
>gb|AC006060.1| Homo sapiens 3 PAC RPCI4-736H12 (Roswell Park Cancer Institute Human PAC
              Library) complete sequence
          Length = 135039

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 131    cacatgcccacaattttattggatg 155
              ||||||||||||||||| |||||||
Sbjct: 108064 cacatgcccacaatttttttggatg 108088
to top
>dbj|AK101976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076O10, full
            insert sequence
          Length = 2093

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 310  gtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtc 366
            ||||||||| || ||||  | ||||||||| || || ||||||| ||||||||||||
Sbjct: 1885 gtactcgaacagcagcgccgtgtggttgaaggccgtcagcttggcgaacccgtagtc 1829
to top
>dbj|AK063756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A07, full
            insert sequence
          Length = 1617

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 310  gtactcgaagagaagcgaggagtggttgaatgcggtgagcttggtgaacccgtagtc 366
            ||||||||| || ||||  | ||||||||| || || ||||||| ||||||||||||
Sbjct: 1392 gtactcgaacagcagcgccgtgtggttgaaggccgtcagcttggcgaacccgtagtc 1336
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 241     gctgagcacgtcgcggtaatc 261
               |||||||||||||||||||||
Sbjct: 2184693 gctgagcacgtcgcggtaatc 2184673
to top
>ref|NM_124422.2| Arabidopsis thaliana hydrolase/ protein serine/threonine phosphatase
            AT5G50400 mRNA, complete cds
          Length = 1836

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 298  gctgctcttcatgtactcgaagagaagcgaggagtg 333
            |||||| ||| |||| ||||||||||| ||||||||
Sbjct: 1737 gctgcttttcttgtattcgaagagaagagaggagtg 1702
to top
>gb|AY842027.1| Arabidopsis thaliana putative purple acid phosphatase (PAP27) mRNA,
            complete cds
          Length = 1836

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 298  gctgctcttcatgtactcgaagagaagcgaggagtg 333
            |||||| ||| |||| ||||||||||| ||||||||
Sbjct: 1737 gctgcttttcttgtattcgaagagaagagaggagtg 1702
to top
>ref|XM_592083.2| PREDICTED: Bos taurus similar to COP9 signalosome complex subunit 8
           (Signalosome subunit 8) (SGN8) (JAB1-containing
           signalosome subunit 8) (COP9 homolog) (hCOP9),
           transcript variant 1 (LOC540180), mRNA
          Length = 1598

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 caattttattggatggatga 160
           ||||||||||||||||||||
Sbjct: 744 caattttattggatggatga 763
to top
>ref|XM_611709.2| PREDICTED: Bos taurus similar to COP9 signalosome complex subunit 8
           (Signalosome subunit 8) (SGN8) (JAB1-containing
           signalosome subunit 8) (COP9 homolog) (hCOP9)
           (LOC540493), mRNA
          Length = 1927

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 caattttattggatggatga 160
           ||||||||||||||||||||
Sbjct: 949 caattttattggatggatga 968
to top
>gb|AC008951.6| Homo sapiens chromosome 5 clone CTD-2337A12, complete sequence
          Length = 124151

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   tggtccctgaatatgctcca 387
             ||||||||||||||||||||
Sbjct: 30314 tggtccctgaatatgctcca 30295
to top
>dbj|AK159352.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420017N16 product:amyloid beta (A4)
            precursor protein, full insert sequence
          Length = 2206

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   tttttactagcacatataaa 101
            ||||||||||||||||||||
Sbjct: 2118 tttttactagcacatataaa 2099
to top
>gb|AC151472.2| Mus musculus BAC clone RP23-407N2 from chromosome 7, complete sequence
          Length = 196583

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    atatgacatgnaggcagttacaa 41
             |||||||||| ||||||||||||
Sbjct: 78731 atatgacatgtaggcagttacaa 78709
to top
>dbj|AB012248.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXI22
          Length = 80115

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 298   gctgctcttcatgtactcgaagagaagcgaggagtg 333
             |||||| ||| |||| ||||||||||| ||||||||
Sbjct: 54259 gctgcttttcttgtattcgaagagaagagaggagtg 54294
to top
>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
              sequence
          Length = 229346

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tttttactagcacatataaa 101
              ||||||||||||||||||||
Sbjct: 136496 tttttactagcacatataaa 136515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,929,594
Number of Sequences: 3902068
Number of extensions: 2929594
Number of successful extensions: 49262
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49072
Number of HSP's gapped (non-prelim): 188
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top