ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24k08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008979.1| Triticum aestivum clone wdk2c.pk005.k24:fis, full... 127 4e-26
2gb|AF472592.1| Lolium perenne cinnamyl alcohol dehydrogenase (CA... 92 2e-15
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AP005324.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6gb|AY110917.1| Zea mays CL4921_1 mRNA sequence 82 2e-12
7ref|NM_196623.1| Oryza sativa (japonica cultivar-group) putative... 74 6e-10
8gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome... 74 6e-10
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
10dbj|AK104047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
11dbj|AK099176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
12dbj|AK069040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 74 6e-10
14ref|XM_473865.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
15emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 66 1e-07
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
17dbj|AK102452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
18gb|AY107698.1| Zea mays PCO143419 mRNA sequence 58 3e-05
19gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 56 1e-04
20gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 56 1e-04
21gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 56 1e-04
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
24dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
25dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
26dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
27emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.13
28ref|XM_483661.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.51
29emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 i... 44 0.51
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
31dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
32dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
33dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
34dbj|AK070951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
35emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chr... 44 0.51
36emb|BX511145.13| Zebrafish DNA sequence from clone DKEY-34N18 in... 42 2.0
37gb|AC160827.2| Xenopus tropicalis clone ISB1-217F24, complete se... 42 2.0
38gb|AC145448.3| Dasypus novemcinctus clone VMRC5-267J9, complete ... 40 8.0
39gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 40 8.0
40gb|AC147104.2| Mus musculus BAC clone RP23-466J20 from chromosom... 40 8.0
41gb|AC131665.4| Mus musculus BAC clone RP23-275B16 from chromosom... 40 8.0
42gb|AC090443.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 8.0
43ref|NM_027777.1| Mus musculus peroxisome biogenesis factor 1 (Pe... 40 8.0
44emb|AL831769.8| Human DNA sequence from clone RP11-343H22 on chr... 40 8.0
45emb|AL358791.24| Human DNA sequence from clone RP11-42B19 on chr... 40 8.0
46gb|AC121333.5| Homo sapiens 3 BAC RP11-691G17 (Roswell Park Canc... 40 8.0
47gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, co... 40 8.0
48gb|AC079766.7| Homo sapiens BAC clone RP11-188P17 from 4, comple... 40 8.0
49dbj|AK136495.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 8.0
50dbj|AK143775.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 40 8.0
51dbj|AK149599.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 40 8.0
52gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, comple... 40 8.0
53gb|AC090686.4| Homo sapiens chromosome 8, clone RP11-771F20, com... 40 8.0
54ref|NM_013462.2| Mus musculus adrenergic receptor, beta 3 (Adrb3... 40 8.0
55gb|AC009710.6|AC009710 Homo sapiens chromosome 8, clone RP11-328... 40 8.0
56gb|AC022456.5|AC022456 Arabidopsis thaliana chromosome 1 BAC T4I... 40 8.0
57dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
58emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in... 40 8.0
59gb|AE004693.1| Pseudomonas aeruginosa PAO1, section 254 of 529 o... 40 8.0
60gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, co... 40 8.0
61gb|BC090845.1| Mus musculus peroxisome biogenesis factor 1, mRNA... 40 8.0
62dbj|AB062093.1| Arabidopsis thaliana DNA, chromosome 1 centromer... 40 8.0
63emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in ... 40 8.0
64dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clo... 40 8.0
65dbj|AP006264.1| Homo sapiens genomic DNA, chromosome 8q22.3, clo... 40 8.0
66emb|X72862.1|MMB3A M.musculus gene for beta-3-adrenergic receptor 40 8.0
67dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0 
>gb|BT008979.1| Triticum aestivum clone wdk2c.pk005.k24:fis, full insert mRNA
            sequence
          Length = 1418

 Score =  127 bits (64), Expect = 4e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                        
Query: 512  ggcggcggccttgtcgagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgc 571
            ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct: 1204 ggcggcggccttgtcgagggtgttggcgatgtcgatgacgaatcgatacctgacgtcggc 1145

                            
Query: 572  cttggcaaggcgctcc 587
            ||||||||||||||||
Sbjct: 1144 cttggcaaggcgctcc 1129



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                          
Query: 431  aatagcagagaaccagagaccaacgtggaccgtgagcagtgctgag 476
            |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1279 aatagcagagaaccagagaccaacgtggaccgtgagtagtgctgag 1234
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>gb|AF472592.1| Lolium perenne cinnamyl alcohol dehydrogenase (CAD2) mRNA, complete
            cds
          Length = 1378

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                        
Query: 522  ttgtcgagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaagg 581
            ||||||||||||||||| |||||||||||||| ||||||||||||||   ||||||||||
Sbjct: 1192 ttgtcgagggtgttgccgatgtcgatgacgaagcgatacctgacgtcgttcttggcaagg 1133

                  
Query: 582  cgctcc 587
            ||||||
Sbjct: 1132 cgctcc 1127
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 527      gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
                |||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 10349079 gagggtgttgccgatgtcgatgacgaagcggtacctgacgtcggccttggcgaggcgctc 10349138

                 
Query: 587      c 587
                |
Sbjct: 10349139 c 10349139



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 527     gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
               |||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 7353144 gagggtgttgccgatgtcgatgacgaagcggtacctgacgtcggccttggcgaggcgctc 7353085

                
Query: 587     c 587
               |
Sbjct: 7353084 c 7353084



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 234      atcctccaaaattcctttgacaatcct 260
                |||||||||||||||| ||||||||||
Sbjct: 21145868 atcctccaaaattcctatgacaatcct 21145894



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 510      agggcggcggccttgtcgaggg 531
                ||||||||||||||||||||||
Sbjct: 27504384 agggcggcggccttgtcgaggg 27504363
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>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091D16
          Length = 174222

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 527   gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
             |||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 50037 gagggtgttgccgatgtcgatgacgaagcggtacctgacgtcggccttggcgaggcgctc 50096

              
Query: 587   c 587
             |
Sbjct: 50097 c 50097
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>dbj|AP005324.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0691F12
          Length = 139482

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 527   gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
             |||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 92573 gagggtgttgccgatgtcgatgacgaagcggtacctgacgtcggccttggcgaggcgctc 92514

              
Query: 587   c 587
             |
Sbjct: 92513 c 92513
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>gb|AY110917.1| Zea mays CL4921_1 mRNA sequence
          Length = 1136

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 527 gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
           |||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct: 567 gagggtgttgccgatgtcgatgacgaagcggtacctgacgtcagccttggccaggcgctc 508

            
Query: 587 c 587
           |
Sbjct: 507 c 507
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>ref|NM_196623.1| Oryza sativa (japonica cultivar-group) putative cinnamyl alcohol
            dehydrogenase (OSJNBa0073D04.1), mRNA
          Length = 1491

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
            ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 1242 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 1183

             
Query: 587  c 587
            |
Sbjct: 1182 c 1182
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>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04,
              complete sequence
          Length = 155372

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 527    gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
              ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 115164 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 115223

               
Query: 587    c 587
              |
Sbjct: 115224 c 115224
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 527      gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
                ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 14790015 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 14790074

                 
Query: 587      c 587
                |
Sbjct: 14790075 c 14790075
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>dbj|AK104047.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H02, full
            insert sequence
          Length = 1416

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
            ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 1195 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 1136

             
Query: 587  c 587
            |
Sbjct: 1135 c 1135
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>dbj|AK099176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090E20, full
            insert sequence
          Length = 1394

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
            ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 1159 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 1100

             
Query: 587  c 587
            |
Sbjct: 1099 c 1099
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>dbj|AK069040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003B20, full
            insert sequence
          Length = 1565

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
            ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 1281 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 1222

             
Query: 587  c 587
            |
Sbjct: 1221 c 1221
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 527      gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
                ||||||||| || | |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 14798256 gagggtgttcccgacgtcgatgacgaagcgatacctgacatccgccttggcgaggcgctc 14798315

                 
Query: 587      c 587
                |
Sbjct: 14798316 c 14798316
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>ref|XM_473865.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1233

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
            |||||||||||| ||||||| |||||| || |||||||||||  ||||||| ||||||||
Sbjct: 1221 gagggtgttgccgatgtcgacgacgaagcggtacctgacgtcgcccttggcgaggcgctc 1162

             
Query: 587  c 587
            |
Sbjct: 1161 c 1161
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 527   gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
             |||||||||||| ||||||| |||||| || |||||||||||  ||||||| ||||||||
Sbjct: 89567 gagggtgttgccgatgtcgacgacgaagcggtacctgacgtcgcccttggcgaggcgctc 89508

              
Query: 587   c 587
             |
Sbjct: 89507 c 89507
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 527      gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
                |||||||||||| ||||||| |||||| || |||||||||||  ||||||| ||||||||
Sbjct: 31107486 gagggtgttgccgatgtcgacgacgaagcggtacctgacgtcgcccttggcgaggcgctc 31107427

                 
Query: 587      c 587
                |
Sbjct: 31107426 c 31107426
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>dbj|AK102452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093P08, full
            insert sequence
          Length = 1329

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcgctc 586
            |||||||||||| ||||||| |||||| || |||||||||||  ||||||| ||||||||
Sbjct: 1174 gagggtgttgccgatgtcgacgacgaagcggtacctgacgtcgcccttggcgaggcgctc 1115

             
Query: 587  c 587
            |
Sbjct: 1114 c 1114
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>gb|AY107698.1| Zea mays PCO143419 mRNA sequence
          Length = 1374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 527  gagggtgttgccaatgtcgatgacgaatcgatacctgacgtccgccttggcaaggcg 583
            |||||||||||| |||||||||||||| || |||||||| ||  ||||||| |||||
Sbjct: 1206 gagggtgttgccgatgtcgatgacgaagcggtacctgacctcgcccttggcgaggcg 1150
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>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 234   atcctccaaaattcctttgacaatcctttgaa 265
             |||||||||||||||||||| |||||||||||
Sbjct: 96842 atcctccaaaattcctttgagaatcctttgaa 96873
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>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative
             chromosome condensation factor (CCF), putative resistance
             protein (RGA-2), putative resistance protein (RGA2) and
             putative nodulin-like-like protein (NLL) gene, complete
             cds; and retrotransposons Josephine, Angela-2, Angela-4,
             Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6,
             Angela-5, Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 234   atcctccaaaattcctttgacaatcctttgaa 265
             |||||||||||||||||||| |||||||||||
Sbjct: 57153 atcctccaaaattcctttgagaatcctttgaa 57184
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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence
          Length = 187012

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 234   atcctccaaaattcctttgacaatcctttgaa 265
             |||||||||||||||||||| |||||||||||
Sbjct: 77301 atcctccaaaattcctttgagaatcctttgaa 77332
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 234      atcctccaaaattcctttgacaatcct 260
                |||||||||||||||| ||||||||||
Sbjct: 25397929 atcctccaaaattcctatgacaatcct 25397903
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 234      atcctccaaaattcctttgacaatcct 260
                |||||||||||||||| ||||||||||
Sbjct: 24094551 atcctccaaaattcctatgacaatcct 24094577



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      atcctccaaaattcctttga 253
                ||||||||||||||||||||
Sbjct: 32029744 atcctccaaaattcctttga 32029763
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>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0410E03
          Length = 164839

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 234   atcctccaaaattcctttgacaatcct 260
             |||||||||||||||| ||||||||||
Sbjct: 70373 atcctccaaaattcctatgacaatcct 70399
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>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019I19
          Length = 164483

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 234   atcctccaaaattcctttgacaatcct 260
             |||||||||||||||| ||||||||||
Sbjct: 71938 atcctccaaaattcctatgacaatcct 71912
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0413H11
          Length = 147655

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 234    atcctccaaaattcctttgacaatcct 260
              |||||||||||||||| ||||||||||
Sbjct: 117078 atcctccaaaattcctatgacaatcct 117104
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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 234   atcctccaaaattcctttgacaatcct 260
             |||||||||||||||| ||||||||||
Sbjct: 67614 atcctccaaaattcctatgacaatcct 67640
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>ref|XM_483661.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2364

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 510 agggcggcggccttgtcgaggg 531
           ||||||||||||||||||||||
Sbjct: 435 agggcggcggccttgtcgaggg 414
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>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11,
              complete sequence
          Length = 198600

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 397    gaactttagattcttcattgttacca 422
              ||||||||||||||||||||| ||||
Sbjct: 118175 gaactttagattcttcattgtcacca 118150
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 195      gagtggatgaaaatttcctatg 216
                ||||||||||||||||||||||
Sbjct: 28201792 gagtggatgaaaatttcctatg 28201813
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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0544G09
          Length = 137481

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 510    agggcggcggccttgtcgaggg 531
              ||||||||||||||||||||||
Sbjct: 131179 agggcggcggccttgtcgaggg 131158
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>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_E06
          Length = 95069

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 510   agggcggcggccttgtcgaggg 531
             ||||||||||||||||||||||
Sbjct: 67633 agggcggcggccttgtcgaggg 67612
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>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1717_A09
          Length = 203132

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 195    gagtggatgaaaatttcctatg 216
              ||||||||||||||||||||||
Sbjct: 191439 gagtggatgaaaatttcctatg 191460
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>dbj|AK070951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G04, full
           insert sequence
          Length = 2364

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 510 agggcggcggccttgtcgaggg 531
           ||||||||||||||||||||||
Sbjct: 435 agggcggcggccttgtcgaggg 414
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>emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chromosome 2, complete
             sequence
          Length = 149273

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 192   atggagtggatgaaaatttcct 213
             ||||||||||||||||||||||
Sbjct: 67487 atggagtggatgaaaatttcct 67466
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>emb|BX511145.13| Zebrafish DNA sequence from clone DKEY-34N18 in linkage group 17,
            complete sequence
          Length = 102544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 87   ggaattctaaagcacatgaat 107
            |||||||||||||||||||||
Sbjct: 9513 ggaattctaaagcacatgaat 9533
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>gb|AC160827.2| Xenopus tropicalis clone ISB1-217F24, complete sequence
          Length = 29754

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 465   agcagtgctgagttatgtttg 485
             |||||||||||||||||||||
Sbjct: 13812 agcagtgctgagttatgtttg 13792
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>gb|AC145448.3| Dasypus novemcinctus clone VMRC5-267J9, complete sequence
          Length = 149428

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  catacatcagtgacaagaac 400
            ||||||||||||||||||||
Sbjct: 5669 catacatcagtgacaagaac 5688
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>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
             sequence
          Length = 271546

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    taaagcacatgaatataaca 113
             ||||||||||||||||||||
Sbjct: 48481 taaagcacatgaatataaca 48462
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>gb|AC147104.2| Mus musculus BAC clone RP23-466J20 from chromosome 14, complete
             sequence
          Length = 168370

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    agcatcctcagtgcacacaa 50
             ||||||||||||||||||||
Sbjct: 71659 agcatcctcagtgcacacaa 71678
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>gb|AC131665.4| Mus musculus BAC clone RP23-275B16 from chromosome 3, complete sequence
          Length = 180421

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   ctttagattcttcattgtta 419
             ||||||||||||||||||||
Sbjct: 83285 ctttagattcttcattgtta 83304
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>gb|AC090443.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-434H17, complete
             sequence
          Length = 161421

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   aattcctttgacaatccttt 262
             ||||||||||||||||||||
Sbjct: 54105 aattcctttgacaatccttt 54124
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>ref|NM_027777.1| Mus musculus peroxisome biogenesis factor 1 (Pex1), mRNA
          Length = 4323

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 aattcctttgacaatccttt 262
           ||||||||||||||||||||
Sbjct: 961 aattcctttgacaatccttt 942
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>emb|AL831769.8| Human DNA sequence from clone RP11-343H22 on chromosome 10, complete
            sequence
          Length = 44151

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  tggaggatggagtggatgaa 205
            ||||||||||||||||||||
Sbjct: 8711 tggaggatggagtggatgaa 8730
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>emb|AL358791.24| Human DNA sequence from clone RP11-42B19 on chromosome 10 Contains the
             3' end of a novel gene, complete sequence
          Length = 197389

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   tggaggatggagtggatgaa 205
             ||||||||||||||||||||
Sbjct: 79622 tggaggatggagtggatgaa 79641
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>gb|AC121333.5| Homo sapiens 3 BAC RP11-691G17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 142378

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    taggaaagcagtaggaagaa 306
              ||||||||||||||||||||
Sbjct: 128630 taggaaagcagtaggaagaa 128649
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>gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, complete sequence
          Length = 189559

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 340   tccatcctccaaacgcagttttct 363
             |||||||||||||||||| |||||
Sbjct: 27939 tccatcctccaaacgcaggtttct 27916
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>gb|AC079766.7| Homo sapiens BAC clone RP11-188P17 from 4, complete sequence
          Length = 129874

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     tttgatttgcaggaattcta 95
              ||||||||||||||||||||
Sbjct: 110911 tttgatttgcaggaattcta 110930
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>dbj|AK136495.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
            library, clone:9130002F08 product:adrenergic receptor,
            beta 3, full insert sequence
          Length = 2795

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  taggaaagcagtaggaagaa 306
            ||||||||||||||||||||
Sbjct: 2489 taggaaagcagtaggaagaa 2470
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>dbj|AK143775.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430106H21 product:adrenergic receptor,
            beta 3, full insert sequence
          Length = 1864

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  taggaaagcagtaggaagaa 306
            ||||||||||||||||||||
Sbjct: 1783 taggaaagcagtaggaagaa 1764
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>dbj|AK149599.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730049K03 product:similar to
           Pex1pR633Ter [Homo sapiens], full insert sequence
          Length = 1541

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 aattcctttgacaatccttt 262
           ||||||||||||||||||||
Sbjct: 663 aattcctttgacaatccttt 644
to top
>gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, complete sequence
          Length = 129572

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   ccaaaattcctttgacaatc 258
             ||||||||||||||||||||
Sbjct: 57145 ccaaaattcctttgacaatc 57164
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>gb|AC090686.4| Homo sapiens chromosome 8, clone RP11-771F20, complete sequence
          Length = 197065

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aatgtttggatgtttaattg 157
             ||||||||||||||||||||
Sbjct: 65137 aatgtttggatgtttaattg 65156
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>ref|NM_013462.2| Mus musculus adrenergic receptor, beta 3 (Adrb3), mRNA
          Length = 2795

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  taggaaagcagtaggaagaa 306
            ||||||||||||||||||||
Sbjct: 2489 taggaaagcagtaggaagaa 2470
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>gb|AC009710.6|AC009710 Homo sapiens chromosome 8, clone RP11-328M16, complete sequence
          Length = 44603

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aatgtttggatgtttaattg 157
             ||||||||||||||||||||
Sbjct: 24319 aatgtttggatgtttaattg 24338
to top
>gb|AC022456.5|AC022456 Arabidopsis thaliana chromosome 1 BAC T4I21 genomic sequence, complete
             sequence
          Length = 91413

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gtccatccatcctccaaacg 354
             ||||||||||||||||||||
Sbjct: 52849 gtccatccatcctccaaacg 52830
to top
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   atcctccaaaattcctttga 253
             ||||||||||||||||||||
Sbjct: 71558 atcctccaaaattcctttga 71577
to top
>emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in linkage group 22,
             complete sequence
          Length = 256437

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   tgtccatccatcctccaaac 353
             ||||||||||||||||||||
Sbjct: 49412 tgtccatccatcctccaaac 49431
to top
>gb|AE004693.1| Pseudomonas aeruginosa PAO1, section 254 of 529 of the complete
            genome
          Length = 10188

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 508  gcagggcggcggccttgtcgaggg 531
            ||||||||||||||| ||||||||
Sbjct: 1006 gcagggcggcggcctggtcgaggg 983
to top
>gb|AC102544.14| Mus musculus chromosome 8, clone RP23-118B13, complete sequence
          Length = 224946

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   taggaaagcagtaggaagaa 306
             ||||||||||||||||||||
Sbjct: 32417 taggaaagcagtaggaagaa 32436
to top
>gb|BC090845.1| Mus musculus peroxisome biogenesis factor 1, mRNA (cDNA clone
           MGC:102188 IMAGE:6400629), complete cds
          Length = 4323

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 aattcctttgacaatccttt 262
           ||||||||||||||||||||
Sbjct: 961 aattcctttgacaatccttt 942
to top
>dbj|AB062093.1| Arabidopsis thaliana DNA, chromosome 1 centromere region, BAC
             clone:T4M7
          Length = 83530

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gtccatccatcctccaaacg 354
             ||||||||||||||||||||
Sbjct: 40416 gtccatccatcctccaaacg 40397
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>emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in linkage group 22,
             complete sequence
          Length = 149941

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   tgtccatccatcctccaaac 353
             ||||||||||||||||||||
Sbjct: 34966 tgtccatccatcctccaaac 34947
to top
>dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1575F09, complete
              sequence
          Length = 126600

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    aatgtttggatgtttaattg 157
              ||||||||||||||||||||
Sbjct: 118656 aatgtttggatgtttaattg 118675
to top
>dbj|AP006264.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1334D10,
            complete sequence
          Length = 164084

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  aatgtttggatgtttaattg 157
            ||||||||||||||||||||
Sbjct: 5825 aatgtttggatgtttaattg 5844
to top
>emb|X72862.1|MMB3A M.musculus gene for beta-3-adrenergic receptor
          Length = 3438

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  taggaaagcagtaggaagaa 306
            ||||||||||||||||||||
Sbjct: 2906 taggaaagcagtaggaagaa 2887
to top
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    atcctccaaaattcctttga 253
              ||||||||||||||||||||
Sbjct: 126471 atcctccaaaattcctttga 126490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,507,805
Number of Sequences: 3902068
Number of extensions: 5507805
Number of successful extensions: 100727
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100214
Number of HSP's gapped (non-prelim): 513
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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