ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... 103 5e-22
2RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... 102 1e-21
3RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... 95 1e-19
4PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.... 30 6.4
5KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1) 29 8.4

>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score =  103 bits (256), Expect = 5e-22
 Identities = 49/64 (76%), Positives = 54/64 (84%)
 Frame = -2

Query: 575 EMYRDYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKP 396
           EMYRDYI+P F W NF L+EQAKVIVAPRSNNE+D  KLK EFPELLSIKESLIK  + P
Sbjct: 606 EMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGP 665

Query: 395 NQKT 384
           N+KT
Sbjct: 666 NKKT 669



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>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score =  102 bits (253), Expect = 1e-21
 Identities = 46/64 (71%), Positives = 56/64 (87%)
 Frame = -2

Query: 575 EMYRDYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKP 396
           EMY+ YI+P+F W NFNL+EQAKVIVAPRSNNE+D  KL  EFPE+LSIK+SLIK VF+P
Sbjct: 601 EMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEP 660

Query: 395 NQKT 384
           N++T
Sbjct: 661 NKRT 664



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>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 43/64 (67%), Positives = 54/64 (84%)
 Frame = -2

Query: 575 EMYRDYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKP 396
           EMY++YI+P F W NF ++EQAKVIVA RSNNE+D  KL  EFPE+LSIKESL+K VF+P
Sbjct: 604 EMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEP 663

Query: 395 NQKT 384
           N++T
Sbjct: 664 NKRT 667



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>PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.7.9.2)|
            (Pyruvate, water dikinase) (PEP synthase) [Contains: Mja
            pep intein (Mja pepA intein)]
          Length = 1188

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 563  DYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 384
            D+I    ++ +    +  +  +A   NNEL +   K + P +L + E +IK   K   KT
Sbjct: 1071 DFIKEGINFVSLGTNDLTQYTIAIDRNNELVSKYYKEDHPAVLKLVEHVIKTCKKHGIKT 1130

Query: 383  S 381
            S
Sbjct: 1131 S 1131



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>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)|
          Length = 1097

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 206 IPCHYQIITQN-TTWCCYCIL*IRWEMDRVRNKVLCCIVLSH 84
           IP  ++ IT + T WCC+C   + W    VR K   C V+ H
Sbjct: 479 IPHRFEPITNHGTKWCCHCGYILPWGKKNVR-KCTECGVMCH 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,470,181
Number of Sequences: 219361
Number of extensions: 1877201
Number of successful extensions: 4018
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4018
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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