| Clone Name | rbags24j23 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... | 103 | 5e-22 | 2 | RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... | 102 | 1e-21 | 3 | RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... | 95 | 1e-19 | 4 | PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.... | 30 | 6.4 | 5 | KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1) | 29 | 8.4 |
|---|
>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC| 1.1.1.-) Length = 669 Score = 103 bits (256), Expect = 5e-22 Identities = 49/64 (76%), Positives = 54/64 (84%) Frame = -2 Query: 575 EMYRDYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKP 396 EMYRDYI+P F W NF L+EQAKVIVAPRSNNE+D KLK EFPELLSIKESLIK + P Sbjct: 606 EMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGP 665 Query: 395 NQKT 384 N+KT Sbjct: 666 NKKT 669
>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC| 1.1.1.-) Length = 664 Score = 102 bits (253), Expect = 1e-21 Identities = 46/64 (71%), Positives = 56/64 (87%) Frame = -2 Query: 575 EMYRDYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKP 396 EMY+ YI+P+F W NFNL+EQAKVIVAPRSNNE+D KL EFPE+LSIK+SLIK VF+P Sbjct: 601 EMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEP 660 Query: 395 NQKT 384 N++T Sbjct: 661 NKRT 664
>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC| 1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose synthase MUM4) Length = 667 Score = 95.1 bits (235), Expect = 1e-19 Identities = 43/64 (67%), Positives = 54/64 (84%) Frame = -2 Query: 575 EMYRDYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKP 396 EMY++YI+P F W NF ++EQAKVIVA RSNNE+D KL EFPE+LSIKESL+K VF+P Sbjct: 604 EMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEP 663 Query: 395 NQKT 384 N++T Sbjct: 664 NKRT 667
>PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.7.9.2)| (Pyruvate, water dikinase) (PEP synthase) [Contains: Mja pep intein (Mja pepA intein)] Length = 1188 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = -2 Query: 563 DYIDPNFSWKNFNLKEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 384 D+I ++ + + + +A NNEL + K + P +L + E +IK K KT Sbjct: 1071 DFIKEGINFVSLGTNDLTQYTIAIDRNNELVSKYYKEDHPAVLKLVEHVIKTCKKHGIKT 1130 Query: 383 S 381 S Sbjct: 1131 S 1131
>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1097 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 206 IPCHYQIITQN-TTWCCYCIL*IRWEMDRVRNKVLCCIVLSH 84 IP ++ IT + T WCC+C + W VR K C V+ H Sbjct: 479 IPHRFEPITNHGTKWCCHCGYILPWGKKNVR-KCTECGVMCH 519 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,470,181 Number of Sequences: 219361 Number of extensions: 1877201 Number of successful extensions: 4018 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4018 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)