ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24j23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
2dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
3dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
5gb|AF359122.1| Pinus sylvestris isolate plus tree E1101 putative... 54 5e-04
6gb|AF359121.1| Pinus sylvestris isolate plus tree E635C putative... 54 5e-04
7gb|AY103981.1| Zea mays PCO118173 mRNA sequence 50 0.008
8gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete s... 46 0.13
9gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50)... 46 0.13
10gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 ch... 44 0.50
11emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on ch... 44 0.50
12ref|NM_196493.1| Oryza sativa (japonica cultivar-group) contains... 42 2.0
13emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chr... 42 2.0
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
15gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 42 2.0
16dbj|AK111779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
17gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
18gb|AC133514.4| Mus musculus BAC clone RP23-212F6 from chromosome... 40 7.8
19gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosom... 40 7.8
20gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, comple... 40 7.8
21emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, ... 40 7.8
22gb|AY279847.1| Pteragogus cryptus Tmo-4C4 (Tmo-4C4) gene, partia... 40 7.8
23gb|AC069141.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 7.8
24gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome ... 40 7.8
25gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.8
26emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chro... 40 7.8
27dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
28gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chrom... 40 7.8
29gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete... 40 7.8
30gb|AY509272.1| Uncultured Flavobacteriales bacterium clone LiUU-... 40 7.8
31gb|AC127693.4| Mus musculus BAC clone RP23-135G19 from 17, compl... 40 7.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 4e-20
 Identities = 165/202 (81%)
 Strand = Plus / Minus

                                                                            
Query: 371      gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 430
                ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 27731238 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 27731179

                                                                            
Query: 431      ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 490
                |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 27731178 ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 27731119

                                                                            
Query: 491      tcggtgctactatgaccttggcttgctccttcaagttgaagttcttccaggagaagtttg 550
                ||||||| |||||||||||||||||||||| || | | ||||||||||| || || || |
Sbjct: 27731118 tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 27731059

                                      
Query: 551      gatcgatgtaatccctgtacat 572
                |||| ||||||||||| |||||
Sbjct: 27731058 gatcaatgtaatccctatacat 27731037



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 148      aggatacaatagcaacacca 167
                ||||||||||||||||||||
Sbjct: 18542704 aggatacaatagcaacacca 18542723
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score =  107 bits (54), Expect = 4e-20
 Identities = 165/202 (81%)
 Strand = Plus / Minus

                                                                         
Query: 371   gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 430
             ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 16571 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 16512

                                                                         
Query: 431   ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 490
             |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 16511 ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 16452

                                                                         
Query: 491   tcggtgctactatgaccttggcttgctccttcaagttgaagttcttccaggagaagtttg 550
             ||||||| |||||||||||||||||||||| || | | ||||||||||| || || || |
Sbjct: 16451 tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 16392

                                   
Query: 551   gatcgatgtaatccctgtacat 572
             |||| ||||||||||| |||||
Sbjct: 16391 gatcaatgtaatccctatacat 16370
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>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0005A04
          Length = 140723

 Score =  107 bits (54), Expect = 4e-20
 Identities = 165/202 (81%)
 Strand = Plus / Minus

                                                                          
Query: 371    gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 430
              ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 117104 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 117045

                                                                          
Query: 431    ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 490
              |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 117044 ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 116985

                                                                          
Query: 491    tcggtgctactatgaccttggcttgctccttcaagttgaagttcttccaggagaagtttg 550
              ||||||| |||||||||||||||||||||| || | | ||||||||||| || || || |
Sbjct: 116984 tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 116925

                                    
Query: 551    gatcgatgtaatccctgtacat 572
              |||| ||||||||||| |||||
Sbjct: 116924 gatcaatgtaatccctatacat 116903
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>dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H09, full
            insert sequence
          Length = 1447

 Score =  107 bits (54), Expect = 4e-20
 Identities = 165/202 (81%)
 Strand = Plus / Minus

                                                                        
Query: 371  gtcaagccttggatgtcttctgatttggtttgaaaacgtttttgatcagcgactccttga 430
            ||||||||||||| |||||||||||||| |||||||| |   | | ||| || |||||||
Sbjct: 1051 gtcaagccttggacgtcttctgatttggcttgaaaacataccttaccagagaatccttga 992

                                                                        
Query: 431  ttgacagaagttctgggaactccgttttcaatttaacagtgtcaagttcattgttgctcc 490
            |||||| ||||||||| || ||||  ||||  ||   |   ||||| ||||| ||||| |
Sbjct: 991  ttgacaaaagttctggaaattccgccttcagcttggtacaatcaagctcattattgcttc 932

                                                                        
Query: 491  tcggtgctactatgaccttggcttgctccttcaagttgaagttcttccaggagaagtttg 550
            ||||||| |||||||||||||||||||||| || | | ||||||||||| || || || |
Sbjct: 931  tcggtgcaactatgaccttggcttgctcctccagggtaaagttcttccaagaaaaattcg 872

                                  
Query: 551  gatcgatgtaatccctgtacat 572
            |||| ||||||||||| |||||
Sbjct: 871  gatcaatgtaatccctatacat 850
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>gb|AF359122.1| Pinus sylvestris isolate plus tree E1101 putative dTDP-glucose
           4,6-dehydratase gene, partial cds
          Length = 212

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 502 atgaccttggcttgctccttcaagttgaagttcttccaggagaagtttggatcgatgtaa 561
           ||||||||||| ||||||| || | |||| |||||||| |   || | ||||||||||| 
Sbjct: 143 atgaccttggcctgctcctccagggtgaaattcttccaagtatagctcggatcgatgtag 84

                          
Query: 562 tccctgtacatctcc 576
           |||||||||||||||
Sbjct: 83  tccctgtacatctcc 69
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>gb|AF359121.1| Pinus sylvestris isolate plus tree E635C putative dTDP-glucose
           4,6-dehydratase gene, partial cds
          Length = 212

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 502 atgaccttggcttgctccttcaagttgaagttcttccaggagaagtttggatcgatgtaa 561
           ||||||||||| ||||||| || | |||| |||||||| |   || | ||||||||||| 
Sbjct: 143 atgaccttggcctgctcctccagggtgaaattcttccaagtatagctcggatcgatgtag 84

                          
Query: 562 tccctgtacatctcc 576
           |||||||||||||||
Sbjct: 83  tccctgtacatctcc 69
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>gb|AY103981.1| Zea mays PCO118173 mRNA sequence
          Length = 1418

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 478  tcattgttgctcctcggtgctactatgaccttggcttgctc 518
            ||||||||||| || ||||| ||||||||||||| ||||||
Sbjct: 1095 tcattgttgcttctaggtgcgactatgaccttggattgctc 1055
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>gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete sequence
          Length = 75970

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 478   tcattgttgctcctcggtgctactatgaccttggcttgctcct 520
             |||||||||||||  || || ||||| ||||||||||||||||
Sbjct: 28721 tcattgttgctccggggggcaactatcaccttggcttgctcct 28679
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>gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50) mRNA, partial cds
          Length = 1139

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                       
Query: 502 atgaccttggcttgctccttcaagttgaagttcttccaggagaagtttggatcgatgtaa 561
           ||||||||||| ||||||| || | |||| ||| |||| |   || | ||||||||||| 
Sbjct: 688 atgaccttggcctgctcctccagggtgaaattcctccaagtatagctcggatcgatgtag 629

                          
Query: 562 tccctgtacatctcc 576
           |||||||||||||||
Sbjct: 628 tccctgtacatctcc 614
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>gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid
             47B4, complete sequence
          Length = 37265

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 393   atttggtttgaaaacgtttttg 414
             ||||||||||||||||||||||
Sbjct: 14651 atttggtttgaaaacgtttttg 14672
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>emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on chromosome 2, complete
             sequence
          Length = 202001

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 384   tgtcttctgatttggtttgaaa 405
             ||||||||||||||||||||||
Sbjct: 28867 tgtcttctgatttggtttgaaa 28888
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>ref|NM_196493.1| Oryza sativa (japonica cultivar-group) contains similarity to histone
            acetyltransferase GCN5 (OSJNBa0032I20.6), mRNA
          Length = 1752

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 372  tcaagccttggatgtcttctg 392
            |||||||||||||||||||||
Sbjct: 1120 tcaagccttggatgtcttctg 1100
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>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a
             novel gene and a novel pseudogene, complete sequence
          Length = 119343

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    actttataaaaaatgatgcactcca 80
             |||||| ||||||||||||||||||
Sbjct: 46627 actttaaaaaaaatgatgcactcca 46651
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 372      tcaagccttggatgtcttctg 392
                |||||||||||||||||||||
Sbjct: 14038040 tcaagccttggatgtcttctg 14038060
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 372   tcaagccttggatgtcttctg 392
             |||||||||||||||||||||
Sbjct: 54169 tcaagccttggatgtcttctg 54189
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>dbj|AK111779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078H10, full
            insert sequence
          Length = 1691

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 372  tcaagccttggatgtcttctg 392
            |||||||||||||||||||||
Sbjct: 1235 tcaagccttggatgtcttctg 1215
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 372      tcaagccttggatgtcttctg 392
                |||||||||||||||||||||
Sbjct: 14046282 tcaagccttggatgtcttctg 14046302
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>gb|AC133514.4| Mus musculus BAC clone RP23-212F6 from chromosome 5, complete sequence
          Length = 208083

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ccagttatgtgatagtacaa 97
              ||||||||||||||||||||
Sbjct: 151512 ccagttatgtgatagtacaa 151531
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>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gacaagggatggtgacttcc 216
             ||||||||||||||||||||
Sbjct: 48446 gacaagggatggtgacttcc 48465
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>gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, complete sequence
          Length = 140476

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gacaagggatggtgacttcc 216
             ||||||||||||||||||||
Sbjct: 95685 gacaagggatggtgacttcc 95704
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>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12
          Length = 199759

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 394    tttggtttgaaaacgtttttgatc 417
              |||||| |||||||||||||||||
Sbjct: 147969 tttggtatgaaaacgtttttgatc 147992
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>gb|AY279847.1| Pteragogus cryptus Tmo-4C4 (Tmo-4C4) gene, partial cds
          Length = 475

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 193 taatgacaagggatggtgac 212
           ||||||||||||||||||||
Sbjct: 114 taatgacaagggatggtgac 133
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>gb|AC069141.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-23G24, complete
             sequence
          Length = 197264

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   accttggcttgctccttcaa 524
             ||||||||||||||||||||
Sbjct: 36760 accttggcttgctccttcaa 36741
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>gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome unknown, complete
              sequence
          Length = 211960

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    tataagaaactatctcctgc 236
              ||||||||||||||||||||
Sbjct: 157626 tataagaaactatctcctgc 157645
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>gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OABb-263A1, complete
             sequence
          Length = 150582

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    gatagtacaatacaacagag 107
             ||||||||||||||||||||
Sbjct: 55765 gatagtacaatacaacagag 55746
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>emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chromosome X, complete
             sequence
          Length = 88938

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   tataagaaactatctcctgc 236
             ||||||||||||||||||||
Sbjct: 76626 tataagaaactatctcctgc 76607
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>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1789_D08
          Length = 128673

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   aggatacaatagcaacacca 167
             ||||||||||||||||||||
Sbjct: 83843 aggatacaatagcaacacca 83862
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>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
             sequence
          Length = 99384

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   tttggtttgaaaacgtttttgatc 417
             |||||| |||||||||||||||||
Sbjct: 47623 tttggtatgaaaacgtttttgatc 47646
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>gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete sequence
          Length = 153337

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   ctccatttggtcaagccttg 381
             ||||||||||||||||||||
Sbjct: 46501 ctccatttggtcaagccttg 46520
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>gb|AY509272.1| Uncultured Flavobacteriales bacterium clone LiUU-3-244 16S
           ribosomal RNA gene, partial sequence
          Length = 724

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 ggtgttctgtgtaataatct 190
           ||||||||||||||||||||
Sbjct: 680 ggtgttctgtgtaataatct 661
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>gb|AC127693.4| Mus musculus BAC clone RP23-135G19 from 17, complete sequence
          Length = 223894

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    ttgacagaagttctgggaac 450
              ||||||||||||||||||||
Sbjct: 125189 ttgacagaagttctgggaac 125208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,164,061
Number of Sequences: 3902068
Number of extensions: 5164061
Number of successful extensions: 89491
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89263
Number of HSP's gapped (non-prelim): 226
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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