ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24j14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X94973.1|TAH2A274 T.aestivum histone H2A gene (clone TH274) 94 1e-16
2gb|L75802.1|WHTHIH2A Triticum aestivum histone H2A gene, complet... 94 1e-16
3emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chro... 42 0.40
4gb|AF493985.1| Triticum aestivum H2A-1 gene, partial sequence 40 1.6
5dbj|D38087.1|WHTPH2AA Triticum aestivum mRNA for protein H2A, co... 40 1.6
6emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 1.6
7gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 38 6.3
8gb|DP000008.1| Bos taurus target 1 genomic scaffold 38 6.3
9emb|AL365276.9| Human DNA sequence from clone RP11-274C15 on chr... 38 6.3
10gb|AC148038.3| Ovis aries clone CH243-361I2, complete sequence 38 6.3
11gb|AC156366.3| Bos taurus clone RP42-304J18, complete sequence 38 6.3
12gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete s... 38 6.3
13gb|AC136896.6| Homo sapiens chromosome 15, clone RP11-860O1, com... 38 6.3
14dbj|AP006201.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 38 6.3
15dbj|AP006200.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 38 6.3
16dbj|AP002528.1| Homo sapiens genomic DNA, chromosome 6q21, anti-... 38 6.3
17dbj|AB042234.1| Homo sapiens genomic DNA, chromosome 6q21, clone... 38 6.3 
>emb|X94973.1|TAH2A274 T.aestivum histone H2A gene (clone TH274)
          Length = 2546

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 104/120 (86%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                        
Query: 4    cgattgcatatttagcc-tccctacagtaaatcacaggatacaatgtcacccttgcngcg 62
            ||||||||||||||||| | ||||||| ||||||||| | |||||| |||||||||   |
Sbjct: 2486 cgattgcatatttagccattcctacag-aaatcacag-acacaatgccacccttgctcag 2429

                                                                        
Query: 63   ccaatctaagaacagaagcactgctcatctaactaaccaaaannctgctcatcttgtcca 122
            | |||||||| ||||||  ||| |||||||||||||||||||  ||||||||||||||||
Sbjct: 2428 cgaatctaaggacagaacgactactcatctaactaaccaaaagactgctcatcttgtcca 2369
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>gb|L75802.1|WHTHIH2A Triticum aestivum histone H2A gene, complete cds
          Length = 2546

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 104/120 (86%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                        
Query: 4    cgattgcatatttagcc-tccctacagtaaatcacaggatacaatgtcacccttgcngcg 62
            ||||||||||||||||| | ||||||| ||||||||| | |||||| |||||||||   |
Sbjct: 2486 cgattgcatatttagccattcctacag-aaatcacag-acacaatgccacccttgctcag 2429

                                                                        
Query: 63   ccaatctaagaacagaagcactgctcatctaactaaccaaaannctgctcatcttgtcca 122
            | |||||||| ||||||  ||| |||||||||||||||||||  ||||||||||||||||
Sbjct: 2428 cgaatctaaggacagaacgactactcatctaactaaccaaaagactgctcatcttgtcca 2369
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>emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chromosome 4, complete
             sequence
          Length = 189029

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    atctaagaacagaagcactgc 86
             |||||||||||||||||||||
Sbjct: 70282 atctaagaacagaagcactgc 70302
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>gb|AF493985.1| Triticum aestivum H2A-1 gene, partial sequence
          Length = 538

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                      
Query: 31 aaatcacaggatacaatgtcacccttgc 58
          |||||||||| |||||||||||||||||
Sbjct: 35 aaatcacagg-tacaatgtcacccttgc 61
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>dbj|D38087.1|WHTPH2AA Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-2
          Length = 717

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 ctgctcatcttgtccatgag 126
           ||||||||||||||||||||
Sbjct: 591 ctgctcatcttgtccatgag 572
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 3       acgattgcatatttagcctc 22
               ||||||||||||||||||||
Sbjct: 2937966 acgattgcatatttagcctc 2937947
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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      atcacaggatacaatgtca 51
               |||||||||||||||||||
Sbjct: 1586139 atcacaggatacaatgtca 1586157
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      atcacaggatacaatgtca 51
               |||||||||||||||||||
Sbjct: 1719095 atcacaggatacaatgtca 1719113
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>emb|AL365276.9| Human DNA sequence from clone RP11-274C15 on chromosome 6, complete
              sequence
          Length = 158737

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     agtaaatcacaggatacaa 46
              |||||||||||||||||||
Sbjct: 157601 agtaaatcacaggatacaa 157583
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>gb|AC148038.3| Ovis aries clone CH243-361I2, complete sequence
          Length = 198973

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     atcacaggatacaatgtca 51
              |||||||||||||||||||
Sbjct: 117535 atcacaggatacaatgtca 117553
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>gb|AC156366.3| Bos taurus clone RP42-304J18, complete sequence
          Length = 91721

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    atcacaggatacaatgtca 51
             |||||||||||||||||||
Sbjct: 34832 atcacaggatacaatgtca 34850
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>gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete sequence
          Length = 197659

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    atcacaggatacaatgtca 51
             |||||||||||||||||||
Sbjct: 40708 atcacaggatacaatgtca 40726
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>gb|AC136896.6| Homo sapiens chromosome 15, clone RP11-860O1, complete sequence
          Length = 214946

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     agtaaatcacaggatacaa 46
              |||||||||||||||||||
Sbjct: 191342 agtaaatcacaggatacaa 191360
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>dbj|AP006201.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-79K22, complete
              sequence
          Length = 172172

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     agtaaatcacaggatacaa 46
              |||||||||||||||||||
Sbjct: 125821 agtaaatcacaggatacaa 125803
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>dbj|AP006200.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-688E1, complete
             sequence
          Length = 159019

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    agtaaatcacaggatacaa 46
             |||||||||||||||||||
Sbjct: 22169 agtaaatcacaggatacaa 22151
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>dbj|AP002528.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region,
             section 1/4
          Length = 300000

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    agtaaatcacaggatacaa 46
             |||||||||||||||||||
Sbjct: 78706 agtaaatcacaggatacaa 78688
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>dbj|AB042234.1| Homo sapiens genomic DNA, chromosome 6q21, clone:353I20, complete
             sequence
          Length = 143320

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    agtaaatcacaggatacaa 46
             |||||||||||||||||||
Sbjct: 78706 agtaaatcacaggatacaa 78688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 761,207
Number of Sequences: 3902068
Number of extensions: 761207
Number of successful extensions: 49877
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49824
Number of HSP's gapped (non-prelim): 52
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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