ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MPP10_HUMAN (O00566) U3 small nucleolar ribonucleoprotein protei... 46 7e-05
2MPP10_MOUSE (Q810V0) U3 small nucleolar ribonucleoprotein protei... 40 0.003
3MPP10_SCHPO (O13910) U3 small nucleolar ribonucleoprotein protei... 30 3.9
4GTR8_RAT (Q9JJZ1) Solute carrier family 2, facilitated glucose t... 30 5.1
5GTR8_MOUSE (Q9JIF3) Solute carrier family 2, facilitated glucose... 30 5.1

>MPP10_HUMAN (O00566) U3 small nucleolar ribonucleoprotein protein MPP10 (M|
           phase phosphoprotein 10)
          Length = 681

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = -3

Query: 514 EVAPVAVSDAAMLAPEEVFEGK--GDIKEDAELTQAEXXXXXXXXXXRYAESHKERPAKL 341
           EVAPV+VSDAA+LAPEE+ E    GDIK  AE T  +          +     KE+  + 
Sbjct: 537 EVAPVSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRR 596

Query: 340 RKEETSNI*EAAAYMLCIAN 281
           +  E S++ +A  Y   +A+
Sbjct: 597 KLLEKSSVDQAGKYSKTVAS 616



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>MPP10_MOUSE (Q810V0) U3 small nucleolar ribonucleoprotein protein MPP10 (M|
           phase phosphoprotein 10)
          Length = 681

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = -3

Query: 514 EVAPVAVSDAAMLAPEEVFEGK--GDIKEDAELTQAE 410
           EVAPV+VSDAA+LAPEE+ E    GD+K  AE T  +
Sbjct: 538 EVAPVSVSDAALLAPEEIKEKNKAGDLKTAAEKTATD 574



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>MPP10_SCHPO (O13910) U3 small nucleolar ribonucleoprotein protein mpp10|
          Length = 598

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = -3

Query: 514 EVAPVAVSDAAMLAPEEVFEGKGDIKEDAELTQAEXXXXXXXXXXRYAESHKERPAKLRK 335
           +V P A SD   LAP+EV++   + +E   +T++           +  ++ + R  +   
Sbjct: 482 DVQPTAASDTMALAPQEVYKPSNENREGETITRSGIAISSTEMDHQQKQARRRRVRRKHA 541

Query: 334 EETSNI*E 311
           E+   + E
Sbjct: 542 EKRKQMAE 549



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>GTR8_RAT (Q9JJZ1) Solute carrier family 2, facilitated glucose transporter|
           member 8 (Glucose transporter type 8) (Glucose
           transporter type X1)
          Length = 478

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 278 LELEGGPPPTVQLLLTCYVLQTFRNLMPGLQFQ 180
           L + G  PPT+ LLL CY+ +T R L+   Q+Q
Sbjct: 184 LAVLGCVPPTLMLLLMCYMPETPRFLLTQHQYQ 216



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>GTR8_MOUSE (Q9JIF3) Solute carrier family 2, facilitated glucose transporter|
           member 8 (Glucose transporter type 8) (Glucose
           transporter type X1)
          Length = 477

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 278 LELEGGPPPTVQLLLTCYVLQTFRNLMPGLQFQ 180
           L + G  PPT+ LLL CY+ +T R L+   Q+Q
Sbjct: 184 LAVLGCVPPTLMLLLMCYMPETPRFLLTQHQYQ 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,919,687
Number of Sequences: 219361
Number of extensions: 1256124
Number of successful extensions: 3189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3189
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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