ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24j10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-16... 42 0.95
2gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, r... 42 0.95
3gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94... 42 0.95
4gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete s... 40 3.8
5gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete s... 40 3.8
6emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3... 40 3.8
7emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22,... 40 3.8
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
10emb|BX672566.2|CNS09SC4 Oryza sativa chromosome 12, . Partial se... 40 3.8

>gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-162I7, complete sequence
          Length = 156542

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  gtgctgaagcccactcggcag 220
            |||||||||||||||||||||
Sbjct: 9122 gtgctgaagcccactcggcag 9142



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>gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, region 97A-97B, BAC clone
             BACR19L21, complete sequence
          Length = 162876

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   ccttccctcggttttttatgg 184
             |||||||||||||||||||||
Sbjct: 48462 ccttccctcggttttttatgg 48442



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>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the
             complete sequence
          Length = 322332

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   ccttccctcggttttttatgg 184
             |||||||||||||||||||||
Sbjct: 22309 ccttccctcggttttttatgg 22289



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>gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete sequence
          Length = 132267

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    agataacatacaacaactcatgat 159
              ||||||||||||||| ||||||||
Sbjct: 109896 agataacatacaacatctcatgat 109919



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>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence
          Length = 113836

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 136   agataacatacaacaactcatgat 159
             ||||||||||||||| ||||||||
Sbjct: 35372 agataacatacaacatctcatgat 35349



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>emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3, COMPLETE SEQUENCE
          Length = 136080

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    agataacatacaacaactcatgat 159
              ||||||||||||||| ||||||||
Sbjct: 114721 agataacatacaacatctcatgat 114744



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>emb|BX950854.12| Zebrafish DNA sequence from clone CH211-125M22, complete sequence
          Length = 171896

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    tgccagagcatttctacaat 284
              ||||||||||||||||||||
Sbjct: 171049 tgccagagcatttctacaat 171030



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 132      aggcagataacatacaacaa 151
                ||||||||||||||||||||
Sbjct: 16244252 aggcagataacatacaacaa 16244271



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 132      aggcagataacatacaacaa 151
                ||||||||||||||||||||
Sbjct: 16197485 aggcagataacatacaacaa 16197504



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>emb|BX672566.2|CNS09SC4 Oryza sativa chromosome 12, . Partial sequence from BAC B1004E12 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 24190

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   aggcagataacatacaacaa 151
             ||||||||||||||||||||
Sbjct: 14107 aggcagataacatacaacaa 14126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,279,803
Number of Sequences: 3902068
Number of extensions: 2279803
Number of successful extensions: 35164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35130
Number of HSP's gapped (non-prelim): 34
length of query: 288
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 266
effective length of database: 17,147,199,772
effective search space: 4561155139352
effective search space used: 4561155139352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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