ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24j09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479403.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1173 Score = 208 bits (105), Expect = 1e-50 Identities = 235/277 (84%), Gaps = 6/277 (2%) Strand = Plus / Minus Query: 238 ccaatacacagagaagcacgggacgtgagcgacggccatggcgaggtaccatagtggagc 297 |||||||| | ||||||| |||| ||| | | ||||||||||||||| ||| ||||| Sbjct: 1107 ccaatacagaaagaagcaagggatatgaacaatggccatggcgaggta---tagaggagc 1051 Query: 298 cccaggcgatgcaaggtcgagaaacgggtaaggccaccaggataaagctccagaagcatg 357 ||| | ||||| |||||| ||||| ||||| ||||| ||||| ||||||| ||||||| Sbjct: 1050 ccctgacgatgaaaggtcaagaaatgggtatggcca---ggatatagctccacaagcatg 994 Query: 358 aatgacccactggaaggttacataggagcaactccaaaatacgaagaatgcgatccggta 417 || |||||| |||||||||||||||||||| ||||||||||| ||||| || | ||||| Sbjct: 993 aaggacccattggaaggttacataggagcagctccaaaatacaaagaaagccaggcggta 934 Query: 418 ccaggggaaaggcatattgttgagaagtgtgtctatcagtagaagaacaagattaacaga 477 ||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||| ||| Sbjct: 933 ccaggggaagggcatattgttgagaaatgtgtctatcagtaaaagaacagcattaagaga 874 Query: 478 gtgcatgccatcagtgaccatggcaagcccaaactta 514 |||||||||||||||| || || ||| ||||||||| Sbjct: 873 atgcatgccatcagtgatcaaggaaagtccaaactta 837
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 333 accaggataaagctccagaagcatgaatgacccactggaaggttacataggagcaactcc 392 ||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||| |||| Sbjct: 27649138 accaggatatagctccacaagcatgaaggacccattggaaggttacataggagcagctcc 27649197 Query: 393 aaaatacgaagaatgcgatccggtaccaggggaa 426 ||||||| ||||| || | |||||||||||||| Sbjct: 27649198 aaaatacaaagaaagccaggcggtaccaggggaa 27649231 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 430 catattgttgagaagtgtgtctatcagtagaagaacaagattaacagagtgcatgccatc 489 |||||||||||||| |||||||||||||| ||||||| ||||| ||| ||||||||||| Sbjct: 27649311 catattgttgagaaatgtgtctatcagtaaaagaacagcattaagagaatgcatgccatc 27649370 Query: 490 agtga 494 ||||| Sbjct: 27649371 agtga 27649375
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 333 accaggataaagctccagaagcatgaatgacccactggaaggttacataggagcaactcc 392 ||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||| |||| Sbjct: 106131 accaggatatagctccacaagcatgaaggacccattggaaggttacataggagcagctcc 106190 Query: 393 aaaatacgaagaatgcgatccggtaccaggggaa 426 ||||||| ||||| || | |||||||||||||| Sbjct: 106191 aaaatacaaagaaagccaggcggtaccaggggaa 106224 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 430 catattgttgagaagtgtgtctatcagtagaagaacaagattaacagagtgcatgccatc 489 |||||||||||||| |||||||||||||| ||||||| ||||| ||| ||||||||||| Sbjct: 106304 catattgttgagaaatgtgtctatcagtaaaagaacagcattaagagaatgcatgccatc 106363 Query: 490 agtga 494 ||||| Sbjct: 106364 agtga 106368
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 333 accaggataaagctccagaagcatgaatgacccactggaaggttacataggagcaactcc 392 ||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||| |||| Sbjct: 28240 accaggatatagctccacaagcatgaaggacccattggaaggttacataggagcagctcc 28299 Query: 393 aaaatacgaagaatgcgatccggtaccaggggaa 426 ||||||| ||||| || | |||||||||||||| Sbjct: 28300 aaaatacaaagaaagccaggcggtaccaggggaa 28333 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 430 catattgttgagaagtgtgtctatcagtagaagaacaagattaacagagtgcatgccatc 489 |||||||||||||| |||||||||||||| ||||||| ||||| ||| ||||||||||| Sbjct: 28413 catattgttgagaaatgtgtctatcagtaaaagaacagcattaagagaatgcatgccatc 28472 Query: 490 agtga 494 ||||| Sbjct: 28473 agtga 28477
>ref|XM_753537.1| Ustilago maydis 521 hypothetical protein (UM02483.1) partial mRNA Length = 3201 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 aacatccttgggaaataagcac 218 |||||||||||||||||||||| Sbjct: 862 aacatccttgggaaataagcac 841
>ref|XM_417021.1| PREDICTED: Gallus gallus similar to protocadherin 17; protocadherin 68 (LOC418825), mRNA Length = 3279 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 tcagtgaccatggcaagccca 508 ||||||||||||||||||||| Sbjct: 1904 tcagtgaccatggcaagccca 1924
>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200540 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 gtgtctatcagtagaagaaca 466 ||||||||||||||||||||| Sbjct: 39945 gtgtctatcagtagaagaaca 39925
>emb|AL603907.12| Mouse DNA sequence from clone RP23-139D10 on chromosome 11 Contains a novel gene, complete sequence Length = 226006 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 gaaggcacttggagctatcaagtg 98 ||||||||||||||||||| |||| Sbjct: 41224 gaaggcacttggagctatccagtg 41247
>ref|NM_063840.1| Caenorhabditis elegans E04D5.2 (E04D5.2) mRNA, complete cds Length = 1215 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 catttaaaagggattgttga 57 |||||||||||||||||||| Sbjct: 56 catttaaaagggattgttga 37
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tatcagtagaagaacaagat 470 |||||||||||||||||||| Sbjct: 872458 tatcagtagaagaacaagat 872477 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tatcagtagaagaacaagat 470 |||||||||||||||||||| Sbjct: 843754 tatcagtagaagaacaagat 843773
>emb|Z66496.1|CEE04D5 Caenorhabditis elegans Cosmid E04D5, complete sequence Length = 31536 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 catttaaaagggattgttga 57 |||||||||||||||||||| Sbjct: 11602 catttaaaagggattgttga 11621
>emb|AL035464.20|HS1043E3 Human DNA sequence from clone RP5-1043E3 on chromosome 6p21.1-21.2, complete sequence Length = 126368 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 ccaggggaaaggcatattgt 437 |||||||||||||||||||| Sbjct: 125029 ccaggggaaaggcatattgt 125010
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 taccatagtggagccccagg 303 |||||||||||||||||||| Sbjct: 3513124 taccatagtggagccccagg 3513143 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,892,167 Number of Sequences: 3902068 Number of extensions: 3892167 Number of successful extensions: 58312 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58246 Number of HSP's gapped (non-prelim): 65 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
