ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24i20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M36650.1|BLYGAPDH Barley glyceraldehyde-3-phosphate dehydroge... 262 3e-67
2ref|XM_506852.1| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.002
3ref|XM_466582.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
5dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
6dbj|AK099086.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
7dbj|AK062215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
8gb|DQ083193.1| Oryza sativa (indica cultivar-group) clone 8S4Eb0... 42 0.57
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.57
10dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.57
11gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete... 40 2.3
12gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosom... 40 2.3
13emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 40 2.3
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
15emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 2.3
16gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89... 40 2.3
17emb|BX284664.8| Zebrafish DNA sequence from clone DKEY-7I23 in l... 40 2.3
18ref|NM_191550.1| Oryza sativa (japonica cultivar-group), predic... 38 8.9
19gb|BT016420.1| Zea mays clone Contig253 mRNA sequence 38 8.9
20gb|AC099631.6| Mus musculus chromosome 1, clone RP24-93F22, comp... 38 8.9
21gb|AC164536.5| Mus musculus chromosome 18, clone RP23-425H1, com... 38 8.9
22gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 38 8.9
23gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosom... 38 8.9
24gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complet... 38 8.9
25gb|AC113043.7| Mus musculus chromosome 1, clone RP23-243C7, comp... 38 8.9
26emb|Z32531.1|SMCATHC S.mansoni (Liberian) mRNA for cathepsin C 38 8.9
27gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosom... 38 8.9
28gb|L13431.1|MZEGAPDA Zea mays glyceraldehyde-3-phosphate dehydro... 38 8.9
29dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
30dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
31emb|X73152.1|ZMGAPC4 Z.mays GapC4 gene 38 8.9
32gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete... 38 8.9
33gb|AC132376.4| Mus musculus BAC clone RP24-80J23 from 1, complet... 38 8.9
34emb|AL953906.6| Mouse DNA sequence from clone RP23-109E21 on chr... 38 8.9
35gb|U45857.1|ZMU45857 Zea mays glyceraldehyde-3-phosphate dehydro... 38 8.9
36gb|U45856.1|ZMU45856 Zea mays glyceraldehyde-3-phosphate dehydro... 38 8.9
37gb|AC138293.11| Mus musculus chromosome 18, clone RP23-33P24, co... 38 8.9 
>gb|M36650.1|BLYGAPDH Barley glyceraldehyde-3-phosphate dehydrogenase mRNA, 3' end
          Length = 1141

 Score =  262 bits (132), Expect = 3e-67
 Identities = 167/179 (93%), Gaps = 2/179 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tacataataccaccaaaatgtgagccgctaagctcaaccaaccatcaggatacatccaat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1094 tacataataccaccaaaatgtgagccgctaagctcaaccaaccatcaggat-catccaat 1036

                                                                        
Query: 61   aaaaggnnnnnnnnagttgccataattccatacaaaaatttattctcggaagaggttgta 120
            ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 aaaaggttttttttagttgccataattccatacaaaaatttattctcggaagaggttgta 976

                                                                       
Query: 121  cactcttctcttctctggggcaaaccacactcccctgtatntttatgctttggctcatt 179
            ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 975  cactcttctcttctctggggcaaaccacact-ccctgtatcttcatgctttggctcatt 918
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>ref|XM_506852.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.34 mRNA
          Length = 1460

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                        
Query: 95   aaaatttattctcggaagaggttgtacactcttctcttctctggggcaaaccac-actcc 153
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1323 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1267

                   
Query: 154  cctgtat 160
            |||||||
Sbjct: 1266 cctgtat 1260
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>ref|XM_466582.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1456

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                        
Query: 95   aaaatttattctcggaagaggttgtacactcttctcttctctggggcaaaccac-actcc 153
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1339 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1283

                   
Query: 154  cctgtat 160
            |||||||
Sbjct: 1282 cctgtat 1276
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                            
Query: 95       aaaatttattctcggaagaggttgtacactcttctcttctctggggcaaaccac-actcc 153
                ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 23549735 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 23549679

                       
Query: 154      cctgtat 160
                |||||||
Sbjct: 23549678 cctgtat 23549672
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>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1791_B03
          Length = 166214

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                          
Query: 95     aaaatttattctcggaagaggttgtacactcttctcttctctggggcaaaccac-actcc 153
              ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 115418 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 115362

                     
Query: 154    cctgtat 160
              |||||||
Sbjct: 115361 cctgtat 115355
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>dbj|AK099086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009G10, full
            insert sequence
          Length = 1460

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                        
Query: 95   aaaatttattctcggaagaggttgtacactcttctcttctctggggcaaaccac-actcc 153
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1323 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1267

                   
Query: 154  cctgtat 160
            |||||||
Sbjct: 1266 cctgtat 1260
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>dbj|AK062215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A09, full
            insert sequence
          Length = 1455

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 58/67 (86%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                        
Query: 95   aaaatttattctcggaagaggttgtacactcttctcttctctggggcaaaccac-actcc 153
            ||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||| |||||
Sbjct: 1338 aaaatttattctcggaagaggcttca---tctactcttctctggggcaaaacacaactcc 1282

                   
Query: 154  cctgtat 160
            |||||||
Sbjct: 1281 cctgtat 1275
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>gb|DQ083193.1| Oryza sativa (indica cultivar-group) clone 8S4Eb01 mRNA sequence
          Length = 206

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  aaaatttattctcggaagagg 115
           |||||||||||||||||||||
Sbjct: 38  aaaatttattctcggaagagg 18
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 123      ctcttctcttctctggggcaa 143
                |||||||||||||||||||||
Sbjct: 28719022 ctcttctcttctctggggcaa 28719042



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 121      cactcttctcttctctggg 139
                |||||||||||||||||||
Sbjct: 30578359 cactcttctcttctctggg 30578377
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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431H09
          Length = 166886

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    ctcttctcttctctggggcaa 143
              |||||||||||||||||||||
Sbjct: 102096 ctcttctcttctctggggcaa 102116
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>gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete sequence
          Length = 161996

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     ataattccatacaaaaattt 101
              ||||||||||||||||||||
Sbjct: 114326 ataattccatacaaaaattt 114307
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>gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosome 12, complete sequence
          Length = 177697

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    acactcttctcttctctggg 139
              ||||||||||||||||||||
Sbjct: 111397 acactcttctcttctctggg 111378
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     cataattccatacaaaaatt 100
              ||||||||||||||||||||
Sbjct: 151831 cataattccatacaaaaatt 151850
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 81       cataattccatacaaaaatt 100
                ||||||||||||||||||||
Sbjct: 30884310 cataattccatacaaaaatt 30884329
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    cataattccatacaaaaatt 100
             ||||||||||||||||||||
Sbjct: 60884 cataattccatacaaaaatt 60903
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>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete
              sequence
          Length = 307443

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     ataattccatacaaaaattt 101
              ||||||||||||||||||||
Sbjct: 248319 ataattccatacaaaaattt 248338
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>emb|BX284664.8| Zebrafish DNA sequence from clone DKEY-7I23 in linkage group 8,
             complete sequence
          Length = 228202

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aattccatacaaaaatttat 103
             ||||||||||||||||||||
Sbjct: 28677 aattccatacaaaaatttat 28658
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>ref|NM_191550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1125

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 121  cactcttctcttctctggg 139
            |||||||||||||||||||
Sbjct: 1051 cactcttctcttctctggg 1033
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>gb|BT016420.1| Zea mays clone Contig253 mRNA sequence
          Length = 1831

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 94   aaaaatttattctcggaag 112
            |||||||||||||||||||
Sbjct: 1169 aaaaatttattctcggaag 1151
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>gb|AC099631.6| Mus musculus chromosome 1, clone RP24-93F22, complete sequence
          Length = 185048

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 126  ttctcttctctggggcaaa 144
            |||||||||||||||||||
Sbjct: 2372 ttctcttctctggggcaaa 2354
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>gb|AC164536.5| Mus musculus chromosome 18, clone RP23-425H1, complete sequence
          Length = 188835

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   acactcttctcttctctgg 138
             |||||||||||||||||||
Sbjct: 48161 acactcttctcttctctgg 48179
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                          
Query: 78      tgccataatt-ccatacaaaaatttat 103
               |||||||||| ||||||||||||||||
Sbjct: 2683052 tgccataattgccatacaaaaatttat 2683078
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>gb|AC122519.4| Mus musculus BAC clone RP24-462C10 from chromosome 6, complete sequence
          Length = 138242

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 117   tgtacactcttctcttctc 135
             |||||||||||||||||||
Sbjct: 25759 tgtacactcttctcttctc 25741
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>gb|AC110378.4| Mus musculus BAC clone RP24-193H8 from 6, complete sequence
          Length = 166527

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 117    tgtacactcttctcttctc 135
              |||||||||||||||||||
Sbjct: 164748 tgtacactcttctcttctc 164766
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>gb|AC113043.7| Mus musculus chromosome 1, clone RP23-243C7, complete sequence
          Length = 191557

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     tacataataccaccaaaatgtga 23
             ||||||||||||||| |||||||
Sbjct: 15644 tacataataccaccacaatgtga 15622
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>emb|Z32531.1|SMCATHC S.mansoni (Liberian) mRNA for cathepsin C
          Length = 1659

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 90   atacaaaaatttattctcg 108
            |||||||||||||||||||
Sbjct: 1637 atacaaaaatttattctcg 1655
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>gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosome 1, complete sequence
          Length = 186662

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    ttctcttctctggggcaaa 144
              |||||||||||||||||||
Sbjct: 160699 ttctcttctctggggcaaa 160681
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>gb|L13431.1|MZEGAPDA Zea mays glyceraldehyde-3-phosphate dehydrogenase mRNA, partial cds
          Length = 899

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 94  aaaaatttattctcggaag 112
           |||||||||||||||||||
Sbjct: 799 aaaaatttattctcggaag 781
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>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   cactcttctcttctctggg 139
             |||||||||||||||||||
Sbjct: 60963 cactcttctcttctctggg 60981
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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1060H01
          Length = 157987

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   cactcttctcttctctggg 139
             |||||||||||||||||||
Sbjct: 20636 cactcttctcttctctggg 20654
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>emb|X73152.1|ZMGAPC4 Z.mays GapC4 gene
          Length = 4929

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 94   aaaaatttattctcggaag 112
            |||||||||||||||||||
Sbjct: 4570 aaaaatttattctcggaag 4552
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>gb|AC136008.5| Mus musculus BAC clone RP24-68J1 from 6, complete sequence
          Length = 181220

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 117    tgtacactcttctcttctc 135
              |||||||||||||||||||
Sbjct: 169603 tgtacactcttctcttctc 169585
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>gb|AC132376.4| Mus musculus BAC clone RP24-80J23 from 1, complete sequence
          Length = 191858

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   ttctcttctctggggcaaa 144
             |||||||||||||||||||
Sbjct: 61536 ttctcttctctggggcaaa 61518
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>emb|AL953906.6| Mouse DNA sequence from clone RP23-109E21 on chromosome 2, complete
              sequence
          Length = 172246

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     aattccatacaaaaattta 102
              |||||||||||||||||||
Sbjct: 135613 aattccatacaaaaattta 135631
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>gb|U45857.1|ZMU45857 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC4 (gpc4) mRNA,
            complete cds
          Length = 1232

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 94   aaaaatttattctcggaag 112
            |||||||||||||||||||
Sbjct: 1110 aaaaatttattctcggaag 1092
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>gb|U45856.1|ZMU45856 Zea mays glyceraldehyde-3-phosphate dehydrogenase GAPC3 (gpc3) mRNA,
            complete cds
          Length = 1281

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 94   aaaaatttattctcggaag 112
            |||||||||||||||||||
Sbjct: 1180 aaaaatttattctcggaag 1162
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>gb|AC138293.11| Mus musculus chromosome 18, clone RP23-33P24, complete sequence
          Length = 235495

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    tacactcttctcttctctg 137
              |||||||||||||||||||
Sbjct: 192350 tacactcttctcttctctg 192368


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,142,699
Number of Sequences: 3902068
Number of extensions: 2142699
Number of successful extensions: 206282
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 205977
Number of HSP's gapped (non-prelim): 306
length of query: 182
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 160
effective length of database: 17,147,199,772
effective search space: 2743551963520
effective search space used: 2743551963520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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