ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome... 42 1.1
2ref|XM_473837.1| Oryza sativa (japonica cultivar-group), predic... 42 1.1
3emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
4emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chro... 42 1.1
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
6dbj|AK103652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
7emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.1
8gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome ... 42 1.1
9gb|AY303511.1| Wedelia simsioides external transcribed spacer, p... 40 4.3
10gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 40 4.3
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
12dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
13dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
14emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 ... 40 4.3

>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence
          Length = 239046

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   ggacacctcatgcccacatca 209
             |||||||||||||||||||||
Sbjct: 87920 ggacacctcatgcccacatca 87900



to top

>ref|XM_473837.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1767

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  caacaaaaacaatgcttgtaa 61
           |||||||||||||||||||||
Sbjct: 406 caacaaaaacaatgcttgtaa 386



to top

>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     caacaaaaacaatgcttgtaa 61
              |||||||||||||||||||||
Sbjct: 156364 caacaaaaacaatgcttgtaa 156384



to top

>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the
             5' end of the gene for a novel protein (330000P08Rik)
             (Luc7a), the gene for a novel protein (5530600A18Rik), the
             Abcc3 gene for ATP-binding cassette sub-family C
             (CFTR/MRP) member 3, the Cacna1g gene for calcium channel
             voltage-dependent T type alpha 1G subunit, the 3' end of
             the Tisp78 gene for transcript increased in spermiogenesis
             78 and one CpG island, complete sequence
          Length = 161978

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   aggacacctcatgcccacatc 208
             |||||||||||||||||||||
Sbjct: 19387 aggacacctcatgcccacatc 19367



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 41       caacaaaaacaatgcttgtaa 61
                |||||||||||||||||||||
Sbjct: 30888843 caacaaaaacaatgcttgtaa 30888863



to top

>dbj|AK103652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135D24, full
           insert sequence
          Length = 1952

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  caacaaaaacaatgcttgtaa 61
           |||||||||||||||||||||
Sbjct: 588 caacaaaaacaatgcttgtaa 568



to top

>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    caacaaaaacaatgcttgtaa 61
             |||||||||||||||||||||
Sbjct: 65418 caacaaaaacaatgcttgtaa 65438



to top

>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence
          Length = 185710

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 189    ggacacctcatgcccacatca 209
              |||||||||||||||||||||
Sbjct: 177285 ggacacctcatgcccacatca 177265



to top

>gb|AY303511.1| Wedelia simsioides external transcribed spacer, partial sequence
          Length = 371

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 gacacctcatgcccacatca 209
           ||||||||||||||||||||
Sbjct: 106 gacacctcatgcccacatca 125



to top

>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     actggtacaacaaaaacaat 53
              ||||||||||||||||||||
Sbjct: 116164 actggtacaacaaaaacaat 116145



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       agcaacacaccattattatg 31
                ||||||||||||||||||||
Sbjct: 12355946 agcaacacaccattattatg 12355927



to top

>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1168F12
          Length = 141524

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     agcaacacaccattattatg 31
              ||||||||||||||||||||
Sbjct: 139500 agcaacacaccattattatg 139481



to top

>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0599F09
          Length = 157415

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    agcaacacaccattattatg 31
             ||||||||||||||||||||
Sbjct: 21530 agcaacacaccattattatg 21511



to top

>emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 in linkage group 3,
             complete sequence
          Length = 159132

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    agcggtatggtacggtacag 91
             ||||||||||||||||||||
Sbjct: 51313 agcggtatggtacggtacag 51294


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,532,509
Number of Sequences: 3902068
Number of extensions: 2532509
Number of successful extensions: 38433
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38384
Number of HSP's gapped (non-prelim): 49
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top