| Clone Name | rbags24i12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence Length = 239046 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 ggacacctcatgcccacatca 209 ||||||||||||||||||||| Sbjct: 87920 ggacacctcatgcccacatca 87900
>ref|XM_473837.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1767 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 caacaaaaacaatgcttgtaa 61 ||||||||||||||||||||| Sbjct: 406 caacaaaaacaatgcttgtaa 386
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 caacaaaaacaatgcttgtaa 61 ||||||||||||||||||||| Sbjct: 156364 caacaaaaacaatgcttgtaa 156384
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 aggacacctcatgcccacatc 208 ||||||||||||||||||||| Sbjct: 19387 aggacacctcatgcccacatc 19367
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 caacaaaaacaatgcttgtaa 61 ||||||||||||||||||||| Sbjct: 30888843 caacaaaaacaatgcttgtaa 30888863
>dbj|AK103652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135D24, full insert sequence Length = 1952 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 caacaaaaacaatgcttgtaa 61 ||||||||||||||||||||| Sbjct: 588 caacaaaaacaatgcttgtaa 568
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 caacaaaaacaatgcttgtaa 61 ||||||||||||||||||||| Sbjct: 65418 caacaaaaacaatgcttgtaa 65438
>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence Length = 185710 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 ggacacctcatgcccacatca 209 ||||||||||||||||||||| Sbjct: 177285 ggacacctcatgcccacatca 177265
>gb|AY303511.1| Wedelia simsioides external transcribed spacer, partial sequence Length = 371 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gacacctcatgcccacatca 209 |||||||||||||||||||| Sbjct: 106 gacacctcatgcccacatca 125
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence Length = 175840 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 actggtacaacaaaaacaat 53 |||||||||||||||||||| Sbjct: 116164 actggtacaacaaaaacaat 116145
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agcaacacaccattattatg 31 |||||||||||||||||||| Sbjct: 12355946 agcaacacaccattattatg 12355927
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1168F12 Length = 141524 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agcaacacaccattattatg 31 |||||||||||||||||||| Sbjct: 139500 agcaacacaccattattatg 139481
>dbj|AP005867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0599F09 Length = 157415 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agcaacacaccattattatg 31 |||||||||||||||||||| Sbjct: 21530 agcaacacaccattattatg 21511
>emb|CR381658.11| Zebrafish DNA sequence from clone CH211-245M20 in linkage group 3, complete sequence Length = 159132 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 agcggtatggtacggtacag 91 |||||||||||||||||||| Sbjct: 51313 agcggtatggtacggtacag 51294 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,532,509 Number of Sequences: 3902068 Number of extensions: 2532509 Number of successful extensions: 38433 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38384 Number of HSP's gapped (non-prelim): 49 length of query: 324 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 302 effective length of database: 17,147,199,772 effective search space: 5178454331144 effective search space used: 5178454331144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)