ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24h15 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 86.3 bits (212), Expect(2) = 2e-33 Identities = 39/43 (90%), Positives = 42/43 (97%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 309 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351 Score = 75.5 bits (184), Expect(2) = 2e-33 Identities = 35/43 (81%), Positives = 40/43 (93%) Frame = -3 Query: 525 RGVMEKYPPXQXIFAKISYGESQMLDKAFYEEKVKRLRLSFEQ 397 RGVMEKYPP Q IF+K+SYGESQMLDKAFYEE+V+RL L+FEQ Sbjct: 265 RGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQ 307
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 86.3 bits (212), Expect(2) = 2e-33 Identities = 39/43 (90%), Positives = 42/43 (97%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 309 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351 Score = 75.5 bits (184), Expect(2) = 2e-33 Identities = 35/43 (81%), Positives = 40/43 (93%) Frame = -3 Query: 525 RGVMEKYPPXQXIFAKISYGESQMLDKAFYEEKVKRLRLSFEQ 397 RGVMEKYPP Q IF+K+SYGESQMLDKAFYEE+V+RL L+FEQ Sbjct: 265 RGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQ 307
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 57.8 bits (138), Expect = 2e-08 Identities = 22/39 (56%), Positives = 34/39 (87%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 276 F YA+ +A+++LREQEIRN+ WI+EC+AQNQK R+++ + Sbjct: 323 FTYAIVYAWVKLREQEIRNITWIAECIAQNQKERINNYI 361
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 57.4 bits (137), Expect = 2e-08 Identities = 21/34 (61%), Positives = 31/34 (91%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 291 FHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 302 FHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 55.8 bits (133), Expect = 7e-08 Identities = 22/43 (51%), Positives = 35/43 (81%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FH+ VF++Y++L+EQE RN++WISECVAQ + ++ D+ + IF Sbjct: 307 FHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 348
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 55.8 bits (133), Expect = 7e-08 Identities = 22/43 (51%), Positives = 35/43 (81%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FH+ VF+AY++L+EQE RN++WI+ECVAQ + ++ D+ + IF Sbjct: 309 FHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKI-DNYIPIF 350
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 55.5 bits (132), Expect = 9e-08 Identities = 20/39 (51%), Positives = 33/39 (84%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 276 + Y VF+AY++LREQEIRN++WI+EC++QN K +++ + Sbjct: 315 YGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYI 353
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 53.5 bits (127), Expect = 3e-07 Identities = 20/43 (46%), Positives = 35/43 (81%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 310 FHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 53.5 bits (127), Expect = 3e-07 Identities = 20/43 (46%), Positives = 35/43 (81%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 310 FHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 53.5 bits (127), Expect = 3e-07 Identities = 20/43 (46%), Positives = 35/43 (81%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 310 FHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 53.5 bits (127), Expect = 3e-07 Identities = 20/43 (46%), Positives = 35/43 (81%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 264 FH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 310 FHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 50.8 bits (120), Expect = 2e-06 Identities = 15/36 (41%), Positives = 32/36 (88%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 285 +H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 307 YHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 48.1 bits (113), Expect = 1e-05 Identities = 17/39 (43%), Positives = 31/39 (79%) Frame = -1 Query: 392 FHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 276 F + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R+++ + Sbjct: 304 FAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYI 342
>CAPP2_MESCR (P16097) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEPCase 2)| (PEPC 2) Length = 960 Score = 29.3 bits (64), Expect = 7.0 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = -3 Query: 495 QXIFAKISYGESQMLDKAFYEEKV----KRLRLSFEQXVPLCCFLCVHEATRAGDKELDV 328 + +FAK G + + DK E++ +RLR FE+ L + H+ GD L Sbjct: 817 EMVFAKGDPGIAALYDKLLVSEELWPFGERLRADFEETKGLILKIAGHKDLLEGDPYLRQ 876 Query: 327 DLRMR 313 LR+R Sbjct: 877 RLRLR 881
>Y215_ADE02 (P03291) Hypothetical protein F-215| Length = 215 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +2 Query: 287 GPCSSGSGQRIRRST-SSSLSPALVASCTQRKQHSGTCC 400 GP SS G R RRST +SS SPA A T + C Sbjct: 91 GPSSSRRGARFRRSTAASSRSPATSARSTSSCPRAAPTC 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,468,836 Number of Sequences: 219361 Number of extensions: 1545237 Number of successful extensions: 3820 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3819 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
