ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24h15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192544.1| Oryza sativa (japonica cultivar-group), predic... 246 6e-62
2dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 6e-62
3gb|AY104603.1| Zea mays PCO113315 mRNA sequence 188 1e-44
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
5dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP ... 88 3e-14
7gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosph... 88 3e-14
8gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosph... 88 3e-14
9gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 88 3e-14
10gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 88 3e-14
11gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710... 88 3e-14
12gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete s... 88 3e-14
13dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 88 3e-14
14ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP ... 82 2e-12
15gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) ... 82 2e-12
16gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, comple... 82 2e-12
17gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 m... 82 2e-12
18gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induc... 78 3e-11
19gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 74 5e-10
20gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence 62 2e-06
21gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 60 8e-06
22gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 60 8e-06
23gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome... 44 0.46
24gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complet... 44 0.46
25emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chrom... 44 0.46
26emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 i... 44 0.46
27emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O... 42 1.8
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
30emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial se... 42 1.8
31dbj|D00313.1|YS2PEP1 Saccharomycopsis fibuligera PEP1 gene for p... 42 1.8
32ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 7.1
33gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete s... 40 7.1
34gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete se... 40 7.1
35gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 40 7.1
36ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 40 7.1
37ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 7.1
38ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 7.1
39gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.1
40gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome 40 7.1
41gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome... 40 7.1
42gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Can... 40 7.1
43gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome... 40 7.1
44ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 7.1
45emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on ... 40 7.1
46gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chrom... 40 7.1
47emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 7.1
48emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 ... 40 7.1
49emb|BX936428.10| Zebrafish DNA sequence from clone RP71-19F19 in... 40 7.1
50gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Can... 40 7.1
51emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 i... 40 7.1
52gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, compl... 40 7.1
53gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, comple... 40 7.1
54gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 7.1
55gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome... 40 7.1
56gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, compl... 40 7.1
57dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
58dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
59gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
60gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H... 40 7.1
61gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D... 40 7.1
62gb|AC069151.6| Homo sapiens BAC clone RP11-236I9 from 2, complet... 40 7.1
63dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
64dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
65dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.1
66emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 40 7.1
67emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in... 40 7.1
68gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-... 40 7.1
69gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short ... 40 7.1
70emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 40 7.1
71gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, comple... 40 7.1
72emb|BX276099.7| Zebrafish DNA sequence from clone CH211-204C21 i... 40 7.1 
>ref|NM_192544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  246 bits (124), Expect = 6e-62
 Identities = 218/249 (87%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                        
Query: 277  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 336
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1040 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 981

                                                                        
Query: 337  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaacntg 396
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||
Sbjct: 980  ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaac-tg 922

                                                                        
Query: 397  ctgttcgaatgacaggcgcagcctctttactttctcctcatagaaggccttgtccaacat 456
            |||||| ||||||| || |||||||   |||| |||||||||||||||||| ||||||||
Sbjct: 921  ctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaacat 862

                                                                        
Query: 457  ctgactttccccatatgatatctttgcaaaaatanactggnntggggggtacttctccat 516
             || ||||||||||| || || || |||||||||  ||||  ||| ||||||||||||||
Sbjct: 861  ttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccat 802

                     
Query: 517  tacaccacg 525
            |||||||||
Sbjct: 801  tacaccacg 793
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>dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full
            insert sequence
          Length = 1556

 Score =  246 bits (124), Expect = 6e-62
 Identities = 218/249 (87%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                        
Query: 277  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 336
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1156 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 1097

                                                                        
Query: 337  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaacntg 396
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||
Sbjct: 1096 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaac-tg 1038

                                                                        
Query: 397  ctgttcgaatgacaggcgcagcctctttactttctcctcatagaaggccttgtccaacat 456
            |||||| ||||||| || |||||||   |||| |||||||||||||||||| ||||||||
Sbjct: 1037 ctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaacat 978

                                                                        
Query: 457  ctgactttccccatatgatatctttgcaaaaatanactggnntggggggtacttctccat 516
             || ||||||||||| || || || |||||||||  ||||  ||| ||||||||||||||
Sbjct: 977  ttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccat 918

                     
Query: 517  tacaccacg 525
            |||||||||
Sbjct: 917  tacaccacg 909



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 200  cgattgtgccatcatcaaagcgggccttttgtacagccat 239
            ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 1233 cgattgtgccatcatcaaacctggcattttgtacaaccat 1194
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>gb|AY104603.1| Zea mays PCO113315 mRNA sequence
          Length = 1601

 Score =  188 bits (95), Expect = 1e-44
 Identities = 213/252 (84%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||||||||||| |  |||||||||||| || || ||||| ||||||||||||
Sbjct: 1259 acgacactgtcatggacccgggacttctggttctgagcgacacattcagagatccacatc 1200

                                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 393
            | |||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 1199 aggttcctgatctcctgctcgcggagcctgatgtaagcgaagaaaacagcgtagtggaac 1140

                                                                        
Query: 394  ntgctgttcgaatgacaggcgcagcctctttactttctcctcatagaaggccttgtccaa 453
             ||||| || || |||| ||  |||||||| |||| ||||||||| || ||||| |||||
Sbjct: 1139 -tgctgctcaaaggacaagcatagcctcttgacttcctcctcataaaatgccttatccaa 1081

                                                                        
Query: 454  catctgactttccccatatgatatctttgcaaaaatanactggnntggggggtacttctc 513
            |||||||||||| |||||||| ||| | | ||| ||| |||||  ||| |||||||||||
Sbjct: 1080 catctgactttctccatatgaaatcctggaaaatatagactggtatggtgggtacttctc 1021

                        
Query: 514  cattacaccacg 525
            |||| |||||||
Sbjct: 1020 cattgcaccacg 1009



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 200  cgattgtgccatcatcaaagcgggccttttgtaca 234
            ||||||||||||||||||||| ||| |||||||||
Sbjct: 1330 cgattgtgccatcatcaaagcaggcattttgtaca 1296
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 2e-31
 Identities = 106/117 (90%)
 Strand = Plus / Plus

                                                                            
Query: 277      acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 336
                |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 22852025 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 22852084

                                                                         
Query: 337      ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 393
                ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 22852085 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaac 22852141



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/131 (85%)
 Strand = Plus / Plus

                                                                            
Query: 395      tgctgttcgaatgacaggcgcagcctctttactttctcctcatagaaggccttgtccaac 454
                |||||||| ||||||| || |||||||   |||| |||||||||||||||||| ||||||
Sbjct: 22852687 tgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaac 22852746

                                                                            
Query: 455      atctgactttccccatatgatatctttgcaaaaatanactggnntggggggtacttctcc 514
                || || ||||||||||| || || || |||||||||  ||||  ||| ||||||||||||
Sbjct: 22852747 atttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctcc 22852806

                           
Query: 515      attacaccacg 525
                |||||||||||
Sbjct: 22852807 attacaccacg 22852817



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 200      cgattgtgccatcatcaaagcgggccttttgtacagccat 239
                ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 22851948 cgattgtgccatcatcaaacctggcattttgtacaaccat 22851987
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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score =  145 bits (73), Expect = 2e-31
 Identities = 106/117 (90%)
 Strand = Plus / Plus

                                                                         
Query: 277   acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 336
             |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 55582 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 55641

                                                                      
Query: 337   ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 393
             ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 55642 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaac 55698



 Score =  115 bits (58), Expect = 2e-22
 Identities = 112/131 (85%)
 Strand = Plus / Plus

                                                                         
Query: 395   tgctgttcgaatgacaggcgcagcctctttactttctcctcatagaaggccttgtccaac 454
             |||||||| ||||||| || |||||||   |||| |||||||||||||||||| ||||||
Sbjct: 56244 tgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaac 56303

                                                                         
Query: 455   atctgactttccccatatgatatctttgcaaaaatanactggnntggggggtacttctcc 514
             || || ||||||||||| || || || |||||||||  ||||  ||| ||||||||||||
Sbjct: 56304 atttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctcc 56363

                        
Query: 515   attacaccacg 525
             |||||||||||
Sbjct: 56364 attacaccacg 56374



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 200   cgattgtgccatcatcaaagcgggccttttgtacagccat 239
             ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 55505 cgattgtgccatcatcaaacctggcattttgtacaaccat 55544
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>ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28710 mRNA, complete cds
          Length = 1429

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 1073
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>gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1087

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 940
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>gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1421

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 1056
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>gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1056

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 940
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>gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1429

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 1073
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>gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710/MZN14_20) mRNA, complete
            cds
          Length = 1400

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 1056
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>gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete sequence
          Length = 1363

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1122 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1063

                                                        
Query: 334  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
            | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 1062 aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 1019
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>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14
          Length = 82890

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                         
Query: 274   acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 333
             ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 75724 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 75783

                                                         
Query: 334   aagttccttatctcctgctctcgtagcctcatgtacgcaaagaa 377
             | |||||| ||||||||||||| || |||||| |||||||||||
Sbjct: 75784 aggttcctgatctcctgctctcttaacctcatatacgcaaagaa 75827



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                         
Query: 297   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 356
             |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 82881 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 82822

                                  
Query: 357   tagcctcatgtacgcaaagaa 377
              | |||||| |||||||||||
Sbjct: 82821 caacctcatatacgcaaagaa 82801
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>ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28715 mRNA, complete cds
          Length = 1056

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                        
Query: 297  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 356
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                 
Query: 357  tagcctcatgtacgcaaagaa 377
             | |||||| |||||||||||
Sbjct: 960  caacctcatatacgcaaagaa 940
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>gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) mRNA, complete cds
          Length = 1207

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                        
Query: 297  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 356
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                 
Query: 357  tagcctcatgtacgcaaagaa 377
             | |||||| |||||||||||
Sbjct: 960  caacctcatatacgcaaagaa 940
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>gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1422

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                        
Query: 297  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 356
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1105 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1046

                                 
Query: 357  tagcctcatgtacgcaaagaa 377
             | |||||| |||||||||||
Sbjct: 1045 caacctcatatacgcaaagaa 1025
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>gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 mRNA, complete cds
          Length = 1382

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                        
Query: 297  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 356
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1143 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1084

                                 
Query: 357  tagcctcatgtacgcaaagaa 377
             | |||||| |||||||||||
Sbjct: 1083 caacctcatatacgcaaagaa 1063
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>gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induced mRNA
          Length = 453

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 139/171 (81%), Gaps = 1/171 (0%)
 Strand = Plus / Minus

                                                                       
Query: 280 ctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaagttc 339
           |||||||| || |||  |||||| ||||| || |||||||| || |||||||| | ||||
Sbjct: 274 ctgtcatgaactctggacttctgattctgagccacgcattctgaaatccacattaggttc 215

                                                                       
Query: 340 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaacntgctg 399
           || ||||||||||| | ||||||||| || || ||||| |||||||| |||||| || ||
Sbjct: 214 ctgatctcctgctcccttagcctcatatatgcgaagaacacagcataatggaac-tgttg 156

                                                              
Query: 400 ttcgaatgacaggcgcagcctctttactttctcctcatagaaggccttgtc 450
            || || | || ||  |||||||| || | |||||||||||| ||||||||
Sbjct: 155 ctcaaacgccaagcaaagcctcttcacctcctcctcatagaatgccttgtc 105
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>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH097M21, complete sequence
          Length = 131063

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                         
Query: 297   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 356
             |||||| ||||| ||||| ||||| || |||||||||| |||||| ||||||||||| | 
Sbjct: 96226 cttctgattctgcgcaacacattccgatatccacatcaggttcctgatctcctgctccct 96285

                                                  
Query: 357   tagcctcatgtacgcaaagaaaacagcatagtggaac 393
              | ||||||||| |||||||| || || |||||||||
Sbjct: 96286 caacctcatgtaagcaaagaacaccgcgtagtggaac 96322
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>gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence
          Length = 1534

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 277  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 336
            |||||||||||||| ||| | || |||||||| |  || ||||| || |||||||| | |
Sbjct: 1140 acgctgtcatggactctggttttttggttctgagagacacattcagaaatccacattagg 1081

                               
Query: 337  ttccttatctcctgctctc 355
            |||||||||||||||||||
Sbjct: 1080 ttccttatctcctgctctc 1062
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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                          
Query: 417    gcctctttactttctcctcatagaaggccttgtccaacatctgactttccccatatgata 476
              ||||||| |||| |||||||||||| |||||||| | |||||| || |||||||| ||||
Sbjct: 129739 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 129798

                        
Query: 477    tctttgcaaa 486
               ||| |||||
Sbjct: 129799 acttcgcaaa 129808



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 340    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtg 389
              |||||||||||||| | || |||||| || || |||||||||||||||||
Sbjct: 129526 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtg 129575
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>gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1p4, complete sequence
          Length = 124443

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                          
Query: 417    gcctctttactttctcctcatagaaggccttgtccaacatctgactttccccatatgata 476
              ||||||| |||| |||||||||||| |||||||| | |||||| || |||||||| ||||
Sbjct: 115554 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 115495

                        
Query: 477    tctttgcaaa 486
               ||| |||||
Sbjct: 115494 acttcgcaaa 115485



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 340   cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtg 389
             |||||||||||||| | || |||||| || ||||||||||||||||||||
Sbjct: 90132 cttatctcctgctcccttaacctcatatatgcaaagaaaacagcatagtg 90083



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 417   gcctctttactttctcctcatagaaggccttgtccaacatctgactttccccatatgata 476
             ||||||| |||| |||||||||||| |||||||| | |||||| || |||||||| ||||
Sbjct: 89919 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 89860

                       
Query: 477   tctttgcaaa 486
              ||| |||||
Sbjct: 89859 acttcgcaaa 89850



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 340    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtg 389
              |||||||||||||| | || |||||| || || |||||||||||||||||
Sbjct: 115767 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtg 115718



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 343   atctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtg 389
             ||||||||||| | || |||||| || || |||||||||||||||||
Sbjct: 50598 atctcctgctcccttaacctcatatatgcgaagaaaacagcatagtg 50552



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 431   tcctcatagaaggccttgtccaacatctgactttccccatatgatatctttgcaaa 486
             ||||||||||| |||||||| | |||||| || || ||||| |||| ||| |||||
Sbjct: 50374 tcctcatagaatgccttgtcaagcatctggctctctccatacgataacttcgcaaa 50319
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>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 86    ttttattttgctacaaaaacaaataa 111
             ||||||||| ||||||||||||||||
Sbjct: 15585 ttttattttactacaaaaacaaataa 15610
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>gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complete sequence
          Length = 133624

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 86     ttttattttgctacaaaaacaaataa 111
              ||||||||| ||||||||||||||||
Sbjct: 120438 ttttattttactacaaaaacaaataa 120463
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>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete
              sequence
          Length = 173310

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 86     ttttattttgctacaaaaacaaataa 111
              ||||||||| ||||||||||||||||
Sbjct: 166832 ttttattttactacaaaaacaaataa 166807
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>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13,
             complete sequence
          Length = 219918

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2     tttacattgccaacaaactgcacaaa 27
             ||||||||||||||||||| ||||||
Sbjct: 41802 tttacattgccaacaaactacacaaa 41827
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>emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O22 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 74974

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    aaacatcatttatttagttta 70
             |||||||||||||||||||||
Sbjct: 36992 aaacatcatttatttagttta 36972
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 48       ataaacatcatttatttagtt 68
                |||||||||||||||||||||
Sbjct: 25932452 ataaacatcatttatttagtt 25932432
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 48       ataaacatcatttatttagtt 68
                |||||||||||||||||||||
Sbjct: 25860628 ataaacatcatttatttagtt 25860608
to top
>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 61296

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ataaacatcatttatttagtt 68
             |||||||||||||||||||||
Sbjct: 42837 ataaacatcatttatttagtt 42857
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>dbj|D00313.1|YS2PEP1 Saccharomycopsis fibuligera PEP1 gene for putative secretable acid
            protease, complete cds
          Length = 2753

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 438  agaaggccttgtccaacatct 458
            |||||||||||||||||||||
Sbjct: 1687 agaaggccttgtccaacatct 1667
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>ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha 3 (LOC471651), mRNA
          Length = 6684

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   actgcacaaatagtgccacccact 41
            ||||||| ||||||||||||||||
Sbjct: 1439 actgcaccaatagtgccacccact 1416
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>gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete sequence
          Length = 6281

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   ttgctacaaaaacaaataat 112
            ||||||||||||||||||||
Sbjct: 5207 ttgctacaaaaacaaataat 5226
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>gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete sequence
          Length = 5887

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   ttgctacaaaaacaaataat 112
            ||||||||||||||||||||
Sbjct: 2322 ttgctacaaaaacaaataat 2341
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>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     actgcacaaatagtgccacccact 41
              ||||||| ||||||||||||||||
Sbjct: 104078 actgcaccaatagtgccacccact 104101
to top
>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 18    actgcacaaatagtgccacccact 41
             ||||||| ||||||||||||||||
Sbjct: 53893 actgcaccaatagtgccacccact 53870
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>ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 2,
            mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   actgcacaaatagtgccacccact 41
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
to top
>ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 1,
            mRNA
          Length = 5260

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   actgcacaaatagtgccacccact 41
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 89       tattttgctacaaaaacaaataat 112
                |||||||||| |||||||||||||
Sbjct: 20896600 tattttgctaaaaaaacaaataat 20896577
to top
>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     attttgctacaaaaacaaat 109
              ||||||||||||||||||||
Sbjct: 333714 attttgctacaaaaacaaat 333695
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>gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome 3, complete sequence
          Length = 200490

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   acatctgactttccccatat 472
             ||||||||||||||||||||
Sbjct: 46333 acatctgactttccccatat 46352
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>gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186739

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   catagaaaataggaacaagg 164
             ||||||||||||||||||||
Sbjct: 41380 catagaaaataggaacaagg 41399
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>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence
          Length = 181208

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    acatctgactttccccatat 472
              ||||||||||||||||||||
Sbjct: 164976 acatctgactttccccatat 164995
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>ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (90.t00024) partial mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 148 agaaaataggaacaaggggaataacaaa 175
           ||||||||||||||| || |||||||||
Sbjct: 269 agaaaataggaacaatggtaataacaaa 296
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>emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on chromosome Xq24-25 Contains
             part of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, complete sequence
          Length = 126474

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    ggaaataaacatcatttatttagt 67
             |||||||||||||| |||||||||
Sbjct: 29309 ggaaataaacatcaattatttagt 29286
to top
>gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chromosome 7, complete
             sequence
          Length = 179012

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   atagaaggccttgtccaaca 455
             ||||||||||||||||||||
Sbjct: 26478 atagaaggccttgtccaaca 26497
to top
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    cagcctctttactttctcct 434
              ||||||||||||||||||||
Sbjct: 139788 cagcctctttactttctcct 139769
to top
>emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 in linkage group 12,
             complete sequence
          Length = 123626

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   cagcctctttactttctcct 434
             ||||||||||||||||||||
Sbjct: 95706 cagcctctttactttctcct 95725
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>emb|BX936428.10| Zebrafish DNA sequence from clone RP71-19F19 in linkage group 5,
             complete sequence
          Length = 188618

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   cagcctctttactttctcct 434
             ||||||||||||||||||||
Sbjct: 22319 cagcctctttactttctcct 22300
to top
>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192550

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aacatcatttatttagttta 70
              ||||||||||||||||||||
Sbjct: 119176 aacatcatttatttagttta 119195
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>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22,
              complete sequence
          Length = 195552

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    cagcctctttactttctcct 434
              ||||||||||||||||||||
Sbjct: 181728 cagcctctttactttctcct 181747
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>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ctacaaaaacaaataatgat 115
             ||||||||||||||||||||
Sbjct: 47263 ctacaaaaacaaataatgat 47244
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>gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, complete sequence
          Length = 48680

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   atagaaggccttgtccaaca 455
             ||||||||||||||||||||
Sbjct: 22696 atagaaggccttgtccaaca 22677
to top
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 132     agcttttcagccgcatagaa 151
               ||||||||||||||||||||
Sbjct: 1463892 agcttttcagccgcatagaa 1463873
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>gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome 8, complete sequence
          Length = 220673

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      ttacattgccaacaaactgcacaa 26
              |||||||||||||||| |||||||
Sbjct: 206650 ttacattgccaacaaaatgcacaa 206627
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>gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, complete sequence
          Length = 135503

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ataaacatcatttatttagt 67
             ||||||||||||||||||||
Sbjct: 68625 ataaacatcatttatttagt 68606
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 82       cgccttttattttgctacaa 101
                ||||||||||||||||||||
Sbjct: 13032605 cgccttttattttgctacaa 13032586
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 89       tattttgctacaaaaacaaataat 112
                |||||||||| |||||||||||||
Sbjct: 20889629 tattttgctaaaaaaacaaataat 20889606
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>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    tattttgctacaaaaacaaataat 112
             |||||||||| |||||||||||||
Sbjct: 25912 tattttgctaaaaaaacaaataat 25935
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>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence
          Length = 217615

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    ggccttgtccaacatctgac 461
              ||||||||||||||||||||
Sbjct: 116163 ggccttgtccaacatctgac 116144
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>gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence
          Length = 170528

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   ggccttgtccaacatctgac 461
             ||||||||||||||||||||
Sbjct: 40039 ggccttgtccaacatctgac 40020
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>gb|AC069151.6| Homo sapiens BAC clone RP11-236I9 from 2, complete sequence
          Length = 37694

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   atagaaggccttgtccaaca 455
             ||||||||||||||||||||
Sbjct: 31698 atagaaggccttgtccaaca 31717
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    cgccttttattttgctacaa 101
             ||||||||||||||||||||
Sbjct: 71406 cgccttttattttgctacaa 71387
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>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0577H07
          Length = 126757

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     cgccttttattttgctacaa 101
              ||||||||||||||||||||
Sbjct: 114982 cgccttttattttgctacaa 114963
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>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2
          Length = 70952

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   tttgtacagccatatgcaca 246
             ||||||||||||||||||||
Sbjct: 66000 tttgtacagccatatgcaca 66019
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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    ttattttgctacaaaaacaaataa 111
             ||||||||| ||||||||||||||
Sbjct: 81817 ttattttgcaacaaaaacaaataa 81794
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>emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in linkage group 18,
             complete sequence
          Length = 139084

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    ttattttgctacaaaaacaaataa 111
             ||||||||| ||||||||||||||
Sbjct: 17281 ttattttgcaacaaaaacaaataa 17258
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>gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-alpha1) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   actgcacaaatagtgccacccact 41
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short form protein (PCDH-alpha1)
            variable region sequence, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   actgcacaaatagtgccacccact 41
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
             sequence
          Length = 229346

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   catggaccctgttcttctgg 303
             ||||||||||||||||||||
Sbjct: 91184 catggaccctgttcttctgg 91203
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>gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, complete sequence
          Length = 169338

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      ttacattgccaacaaactgcacaa 26
              |||||||||||||||| |||||||
Sbjct: 143016 ttacattgccaacaaaatgcacaa 143039
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>emb|BX276099.7| Zebrafish DNA sequence from clone CH211-204C21 in linkage group 5,
              complete sequence
          Length = 164049

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    cagcctctttactttctcct 434
              ||||||||||||||||||||
Sbjct: 130863 cagcctctttactttctcct 130844


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,501,702
Number of Sequences: 3902068
Number of extensions: 5501702
Number of successful extensions: 97537
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97204
Number of HSP's gapped (non-prelim): 330
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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