ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483828.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4423 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/86 (82%) Strand = Plus / Minus Query: 342 ttttgatttggaatcacctgagcatttncaggagcctgttatgtcttcgtctccatanat 401 ||||| ||| ||||||| || || ||| ||||| ||||| ||||| ||||||||| | Sbjct: 508 ttttggttttgaatcacttgggcgtttccaggattctgttgagtctttgtctccatagag 449 Query: 402 agcattntcagagaaatcttccgcaa 427 |||||| | ||||||||||||||||| Sbjct: 448 agcatttttagagaaatcttccgcaa 423
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/86 (82%) Strand = Plus / Plus Query: 342 ttttgatttggaatcacctgagcatttncaggagcctgttatgtcttcgtctccatanat 401 ||||| ||| ||||||| || || ||| ||||| ||||| ||||| ||||||||| | Sbjct: 28295935 ttttggttttgaatcacttgggcgtttccaggattctgttgagtctttgtctccatagag 28295994 Query: 402 agcattntcagagaaatcttccgcaa 427 |||||| | ||||||||||||||||| Sbjct: 28295995 agcatttttagagaaatcttccgcaa 28296020
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16 Length = 153296 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/86 (82%) Strand = Plus / Plus Query: 342 ttttgatttggaatcacctgagcatttncaggagcctgttatgtcttcgtctccatanat 401 ||||| ||| ||||||| || || ||| ||||| ||||| ||||| ||||||||| | Sbjct: 24741 ttttggttttgaatcacttgggcgtttccaggattctgttgagtctttgtctccatagag 24800 Query: 402 agcattntcagagaaatcttccgcaa 427 |||||| | ||||||||||||||||| Sbjct: 24801 agcatttttagagaaatcttccgcaa 24826
>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0705A05 Length = 143765 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/86 (82%) Strand = Plus / Plus Query: 342 ttttgatttggaatcacctgagcatttncaggagcctgttatgtcttcgtctccatanat 401 ||||| ||| ||||||| || || ||| ||||| ||||| ||||| ||||||||| | Sbjct: 87750 ttttggttttgaatcacttgggcgtttccaggattctgttgagtctttgtctccatagag 87809 Query: 402 agcattntcagagaaatcttccgcaa 427 |||||| | ||||||||||||||||| Sbjct: 87810 agcatttttagagaaatcttccgcaa 87835
>dbj|AK071244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088K02, full insert sequence Length = 4423 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/86 (82%) Strand = Plus / Minus Query: 342 ttttgatttggaatcacctgagcatttncaggagcctgttatgtcttcgtctccatanat 401 ||||| ||| ||||||| || || ||| ||||| ||||| ||||| ||||||||| | Sbjct: 508 ttttggttttgaatcacttgggcgtttccaggattctgttgagtctttgtctccatagag 449 Query: 402 agcattntcagagaaatcttccgcaa 427 |||||| | ||||||||||||||||| Sbjct: 448 agcatttttagagaaatcttccgcaa 423
>gb|AY452488.1| Pseudomonas frederiksbergensis alkane hydroxylase (alkB) and alcoholdehydrogenase (alkJ) genes, complete cds; and putative flavin-binding monooxygenase gene, partial cds Length = 2894 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 442 gcctacaagcacaacttcct 461
>emb|AL731545.4| Human DNA sequence from clone RP11-431F18 on chromosome 10 Contains the 5' end of a novel gene, complete sequence Length = 24239 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tggtcaatacagaaattcca 109 |||||||||||||||||||| Sbjct: 15537 tggtcaatacagaaattcca 15518
>emb|AL591206.9| Human DNA sequence from clone RP11-151J10 on chromosome 9 Contains the 5' end of a novel gene (FLJ20060) (contains FLJ12902, KIAA1574), the ADFP gene for adipose differentiation-related protein (ADRP) and 2 CpG islands, complete sequence Length = 130713 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gaactcagtatcacaaaaat 312 |||||||||||||||||||| Sbjct: 109828 gaactcagtatcacaaaaat 109809
>emb|AL590290.5| Human DNA sequence from clone RP11-228O6 on chromosome 6, complete sequence Length = 114653 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 atcacaaaaatcattgggtt 321 |||||||||||||||||||| Sbjct: 20203 atcacaaaaatcattgggtt 20184
>emb|AL391809.21| Human DNA sequence from clone RP11-47A4 on chromosome 1 Contains the 5' end of the RYR2 gene for ryanodine receptor 2 (cardiac) and three CpG islands, complete sequence Length = 167548 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccccaggatcattcaaagct 81 |||||||||||||||||||| Sbjct: 9509 ccccaggatcattcaaagct 9490
>emb|AL049714.6|HSJ181J22 Human DNA sequence from clone RP1-181J22 on chromosome 11p13 Contains an RPL34 (60S Ribosomal protein L34) pseudogene, ESTs and GSSs, complete sequence Length = 55316 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gggttgttttgatttggaat 355 |||||||||||||||||||| Sbjct: 40825 gggttgttttgatttggaat 40806
>emb|AJ833975.1| Pseudomonas aeruginosa partial alkB1 gene for putative alkane hydroxylase, strain GL1 CIP104590 Length = 294 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 75 gcctacaagcacaacttcct 94
>emb|BX546466.6| Zebrafish DNA sequence from clone DKEY-43N10 in linkage group 23, complete sequence Length = 109069 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 cattgggttatgcatcttgacagg 336 ||||||||| |||||||||||||| Sbjct: 22440 cattgggttttgcatcttgacagg 22463
>emb|AJ633620.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain CHA Length = 1383 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 752 gcctacaagcacaacttcct 771
>emb|AJ633619.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain ATCC15524 Length = 1360 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 741 gcctacaagcacaacttcct 760
>emb|AJ633618.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain CECT119 Length = 1405 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 774 gcctacaagcacaacttcct 793
>emb|AJ633617.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain 19G12 Length = 1372 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 753 gcctacaagcacaacttcct 772
>emb|AJ633616.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain PAK Length = 1404 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 774 gcctacaagcacaacttcct 793
>emb|AJ633615.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain ATCC33818 Length = 1308 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 677 gcctacaagcacaacttcct 696
>emb|AJ633614.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain ATCC33356 Length = 1361 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 741 gcctacaagcacaacttcct 760
>emb|AJ633613.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain ATCC15691 Length = 1421 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 753 gcctacaagcacaacttcct 772
>emb|AJ633612.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain ATCC10145 Length = 1390 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 774 gcctacaagcacaacttcct 793
>emb|AJ633611.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain SG31 Length = 1372 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 752 gcctacaagcacaacttcct 771
>emb|AJ633610.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain 63741 Length = 1427 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 780 gcctacaagcacaacttcct 799
>emb|AJ633609.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain HJ2 Length = 1383 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 752 gcctacaagcacaacttcct 771
>emb|AJ633608.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain DM Length = 1353 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 752 gcctacaagcacaacttcct 771
>emb|AJ633607.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain DSM1128 Length = 1435 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 792 gcctacaagcacaacttcct 811
>emb|AJ633606.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain G7 Length = 1409 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 741 gcctacaagcacaacttcct 760
>emb|AJ633605.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain 892 Length = 1431 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 769 gcctacaagcacaacttcct 788
>emb|AJ633604.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain SG1 Length = 1430 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 768 gcctacaagcacaacttcct 787
>emb|AJ633603.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain K9 Length = 1383 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 753 gcctacaagcacaacttcct 772
>emb|AJ633602.1| Pseudomonas aeruginosa alkB2 gene for alkane hydroxylase, strain RR1 Length = 1134 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 592 gcctacaagcacaacttcct 611
>gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 of the complete genome Length = 13203 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 683 gcctacaagcacaacttcct 664
>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence Length = 190341 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gggttgttttgatttggaat 355 |||||||||||||||||||| Sbjct: 71990 gggttgttttgatttggaat 72009
>emb|AJ311787.1|PSP311787 Pseudomonas sp. A4 partial gene sequence for putative alkane hydroxylase Length = 504 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 163 gcctacaagcacaacttcct 182
>emb|AJ344088.1|PAE344088 Pseudomonas aeruginosa partial alkB2 gene for putative alkane-1-monooxygenase, isolate PAO1 Length = 724 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 442 gcctacaagcacaacttcct 461
>emb|AJ344085.1|PAE344085 Pseudomonas aeruginosa partial alkB2 gene for putative alkane-1-monooxygenase, isolate UMI-97 Length = 724 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 442 gcctacaagcacaacttcct 461
>emb|AJ344081.1|PAE344081 Pseudomonas aeruginosa partial alkB2 gene for putative alkane-1-hydroxylase, isolate UMI-88 Length = 724 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcctacaagcacaacttcct 192 |||||||||||||||||||| Sbjct: 442 gcctacaagcacaacttcct 461
>gb|AC024796.1| Caenorhabditis elegans cosmid Y48G1C, complete sequence Length = 60391 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 tcagagaaatcttccgcaaa 428 |||||||||||||||||||| Sbjct: 35093 tcagagaaatcttccgcaaa 35112
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 tgatttggaatcacctgagcattt 368 |||||||||||||| ||||||||| Sbjct: 3867706 tgatttggaatcacttgagcattt 3867683
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 tgatttggaatcacctgagcattt 368 |||||||||||||| ||||||||| Sbjct: 4231691 tgatttggaatcacttgagcattt 4231668 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,447,746 Number of Sequences: 3902068 Number of extensions: 3447746 Number of successful extensions: 114971 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114881 Number of HSP's gapped (non-prelim): 90 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
