ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein V... 29 3.1
2FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (F... 29 4.0

>POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2167

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  NAHVSLRLPYXSKFPIHSPIRFGNWANLL 132
           N   +L LPY +  P+ SPIR  +W+ L+
Sbjct: 248 NNSATLVLPYANAIPMDSPIRHSSWSLLV 276



to top

>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)|
          Length = 3103

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 49   AHVSLRLPYXSKFPIHSPIRFGNW 120
            ++VS+R+P    F  HSP+  G W
Sbjct: 2626 SYVSMRIPLFVSFVFHSPVATGGW 2649


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,690,082
Number of Sequences: 219361
Number of extensions: 216029
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top