| Clone Name | rbags24h02 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein V... | 29 | 3.1 | 2 | FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (F... | 29 | 4.0 |
|---|
>POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2167 Score = 29.3 bits (64), Expect = 3.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 46 NAHVSLRLPYXSKFPIHSPIRFGNWANLL 132 N +L LPY + P+ SPIR +W+ L+ Sbjct: 248 NNSATLVLPYANAIPMDSPIRHSSWSLLV 276
>FREM2_LYTVA (Q9GV77) Extracellular matrix protein 3 precursor (FREM2 homolog)| Length = 3103 Score = 28.9 bits (63), Expect = 4.0 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 49 AHVSLRLPYXSKFPIHSPIRFGNW 120 ++VS+R+P F HSP+ G W Sbjct: 2626 SYVSMRIPLFVSFVFHSPVATGGW 2649 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,690,082 Number of Sequences: 219361 Number of extensions: 216029 Number of successful extensions: 466 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 466 length of database: 80,573,946 effective HSP length: 27 effective length of database: 74,651,199 effective search space used: 1791628776 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)