ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PMGI_PRUDU (O24246) 2,3-bisphosphoglycerate-independent phosphog... 47 1e-05
2PMGI_MAIZE (P30792) 2,3-bisphosphoglycerate-independent phosphog... 43 2e-04
3PMG2_ARATH (Q9M9K1) Probable 2,3-bisphosphoglycerate-independent... 43 2e-04
4PMGI_RICCO (P35493) 2,3-bisphosphoglycerate-independent phosphog... 42 4e-04
5PMGI_MESCR (Q42908) 2,3-bisphosphoglycerate-independent phosphog... 41 7e-04
6PMG1_ARATH (O04499) 2,3-bisphosphoglycerate-independent phosphog... 40 0.001
7PMGI_TOBAC (P35494) 2,3-bisphosphoglycerate-independent phosphog... 37 0.013
8YOPB_YERPS (Q06114) Protein yopB 29 2.6
9YOPB_YEREN (P37131) Protein yopB 29 2.6
10NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor ... 28 5.8

>PMGI_PRUDU (O24246) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (PGAM-I) (Fragment)
          Length = 488

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVVD 241
           TV NLHGF+APADYETTLIEVVD
Sbjct: 465 TVMNLHGFEAPADYETTLIEVVD 487



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>PMGI_MAIZE (P30792) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (PGAM-I)
          Length = 559

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVVD 241
           TV NLHGF+APADYE TLIEV D
Sbjct: 536 TVMNLHGFEAPADYEQTLIEVAD 558



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>PMG2_ARATH (Q9M9K1) Probable 2,3-bisphosphoglycerate-independent|
           phosphoglycerate mutase 2 (EC 5.4.2.1)
           (Phosphoglyceromutase 2) (BPG-independent PGAM 2)
           (PGAM-I 2)
          Length = 560

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVVDK 238
           TV NLHGF AP+DYET+LIEVV+K
Sbjct: 537 TVMNLHGFVAPSDYETSLIEVVEK 560



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>PMGI_RICCO (P35493) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (PGAM-I)
          Length = 556

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVVD 241
           TV NLHGF+AP+DYE TLIE VD
Sbjct: 533 TVMNLHGFEAPSDYEPTLIEAVD 555



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>PMGI_MESCR (Q42908) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (PGAM-I)
          Length = 559

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVV 244
           TV NLHGF+AP+DYE TLIEVV
Sbjct: 536 TVMNLHGFEAPSDYEPTLIEVV 557



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>PMG1_ARATH (O04499) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
           (BPG-independent PGAM 1) (PGAM-I 1)
          Length = 557

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVVD 241
           TV NLHGF AP+DYE TLIEVV+
Sbjct: 535 TVMNLHGFVAPSDYEPTLIEVVE 557



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>PMGI_TOBAC (P35494) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (PGAM-I)
          Length = 559

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = -3

Query: 309 TVXNLHGFQAPADYETTLIEVVD 241
           T  NLHG +AP+DYE +LIEVVD
Sbjct: 536 TFMNLHGSEAPSDYEPSLIEVVD 558



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>YOPB_YERPS (Q06114) Protein yopB|
          Length = 401

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 201 GSQFCRYSFGVGQGMIASLNNLRFASTLAQNSCVTLRKVD 82
           GSQ  + + GVG G+  ++NN + A     N+ + L K D
Sbjct: 312 GSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKAD 351



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>YOPB_YEREN (P37131) Protein yopB|
          Length = 401

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 201 GSQFCRYSFGVGQGMIASLNNLRFASTLAQNSCVTLRKVD 82
           GSQ  + + GVG G+  ++NN + A     N+ + L K D
Sbjct: 312 GSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKAD 351



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>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)|
           (Nepenthesin-I)
          Length = 437

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 222 AL*SQNCGSQFCRYSFGVGQG 160
           AL S  C + FC+Y++G G G
Sbjct: 157 ALSSPTCSNNFCQYTYGYGDG 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,127,741
Number of Sequences: 219361
Number of extensions: 723870
Number of successful extensions: 1491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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