| Clone Name | rbags24g20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ784281.1| Hordeum vulgare subsp. vulgare partial mRNA for putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (pgam-I gene) Length = 196 Score = 113 bits (57), Expect = 3e-22 Identities = 59/60 (98%) Strand = Plus / Minus Query: 252 cgatgagggtcgtctcgtaatcggcaggagcctggaagccatggaggttnatcaccgtgg 311 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 166 cgatgagggtcgtctcgtaatcggcaggagcctggaagccatggaggttcatcaccgtgg 107
>emb|AJ004915.1|MDJ004915 Malus domestica mRNA for phosphoglyceromutase, complete cds Length = 2132 Score = 48.1 bits (24), Expect = 0.017 Identities = 50/59 (84%) Strand = Plus / Minus Query: 248 acttcgatgagggtcgtctcgtaatcggcaggagcctggaagccatggaggttnatcac 306 ||||||||||||| | |||||| ||| |||||||||||| ||||| ||||| ||||| Sbjct: 1741 acttcgatgagggatggctcgtagtcgctaggagcctggaatccatgcaggttcatcac 1683
>gb|AC007374.6|AC007374 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31, complete sequence Length = 190565 Score = 48.1 bits (24), Expect = 0.017 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 cattccttgacccaccccaaaact 180 |||||||||||||||||||||||| Sbjct: 133361 cattccttgacccaccccaaaact 133338
>emb|AL121784.5|CNS01DSH Human chromosome 14 DNA sequence BAC R-305I3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180523 Score = 48.1 bits (24), Expect = 0.017 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 cattccttgacccaccccaaaact 180 |||||||||||||||||||||||| Sbjct: 110880 cattccttgacccaccccaaaact 110857
>gb|AC162789.4| Mus musculus chromosome 1, clone RP24-323I23, complete sequence Length = 170236 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 atcattccttgacccaccccaaaact 180 |||| ||||||||||||||||||||| Sbjct: 111352 atcaatccttgacccaccccaaaact 111327
>gb|AC134474.4| Mus musculus BAC clone RP23-234N16 from chromosome 6, complete sequence Length = 171491 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 ggcaggagcctggaagccatggagg 298 |||||||||||||| |||||||||| Sbjct: 72358 ggcaggagcctggaggccatggagg 72382
>emb|AL354836.13| Human DNA sequence from clone RP11-157P1 on chromosome 20 Contains the LAMA5 gene for laminin alpha 5 (KIAA0533), the GP110 gene for cell membrane glycoprotein (surface antigen), 110000M(r), the KIAA0772 gene with similarity to the gene for oxysterol-binding protein and two putative novel genes, complete sequence Length = 141056 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 acctttctcaatgttacacat 106 ||||||||||||||||||||| Sbjct: 39452 acctttctcaatgttacacat 39432
>gb|AC155641.8| Mus musculus 10 BAC RP24-121N1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195480 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 tccttgacccaccccaaaact 180 ||||||||||||||||||||| Sbjct: 117723 tccttgacccaccccaaaact 117743
>gb|U16021.1|MCU16021 Mesembryanthemum crystallinum phosphoglyceromutase (pgm) gene, complete cds Length = 2032 Score = 42.1 bits (21), Expect = 1.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 244 gacgacttcgatgagggtcgtctcgtaatcggcaggagcct 284 |||||| ||||||||||| | |||||||||| |||||||| Sbjct: 1775 gacgacctcgatgagggttggctcgtaatcgctaggagcct 1735
>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete sequence Length = 182829 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 ggcaggagcctggaagccatggagg 298 ||||||| ||||||||||||||||| Sbjct: 62135 ggcaggaacctggaagccatggagg 62159
>emb|AL671867.8| Mouse DNA sequence from clone RP23-131J17 on chromosome 4, complete sequence Length = 202342 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gatcattccttgacccacccc 174 ||||||||||||||||||||| Sbjct: 85302 gatcattccttgacccacccc 85322
>dbj|AB063037.1| Macaca fascicularis brain cDNA clone:QmoA-11735, full insert sequence Length = 3116 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 acctttctcaatgttacacat 106 ||||||||||||||||||||| Sbjct: 2503 acctttctcaatgttacacat 2483
>gb|AC129576.11| Mus musculus chromosome 10, clone RP24-343D9, complete sequence Length = 136276 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 taatcggcaggagcctggaagcca 292 |||| ||||||||||||||||||| Sbjct: 112576 taattggcaggagcctggaagcca 112599
>gb|AC114010.6| Mus musculus BAC clone RP24-378K23 from chromosome 12, complete sequence Length = 175670 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 caaaatagagctaactgcaa 76 |||||||||||||||||||| Sbjct: 14198 caaaatagagctaactgcaa 14217
>gb|AY153760.1| Agrostis stolonifera var. palustris chloroplast low molecular weight heat shock protein HSP26.8 gene, complete cds; nuclear gene for chloroplast product Length = 3098 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 caaaattggctaccgcaattttgg 211 |||||||||||||| ||||||||| Sbjct: 2815 caaaattggctacctcaattttgg 2838
>gb|AY153759.1| Agrostis stolonifera var. palustris chloroplast low molecular weight heat shock protein HSP26.2m gene, complete cds; nuclear gene for chloroplast product Length = 2922 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 caaaattggctaccgcaattttgg 211 |||||||||||||| ||||||||| Sbjct: 2787 caaaattggctacctcaattttgg 2810
>gb|AY153758.1| Agrostis stolonifera var. palustris chloroplast low molecular weight heat shock protein HSP26.2 gene, complete cds; nuclear gene for chloroplast product Length = 3064 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 caaaattggctaccgcaattttgg 211 |||||||||||||| ||||||||| Sbjct: 2784 caaaattggctacctcaattttgg 2807
>gb|AC159746.5| Mus musculus 6 BAC RP23-437F11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 171039 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ccttgacccaccccaaaact 180 |||||||||||||||||||| Sbjct: 141948 ccttgacccaccccaaaact 141929
>gb|AC107810.8| Mus musculus chromosome 1, clone RP23-68D4, complete sequence Length = 160167 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tgacccaccccaaaactata 183 |||||||||||||||||||| Sbjct: 50763 tgacccaccccaaaactata 50782
>emb|AL163011.3|CNS01RI8 Human chromosome 14 DNA sequence BAC C-2324M15 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 100791 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ctggcaaatctcaaattatt 144 |||||||||||||||||||| Sbjct: 63746 ctggcaaatctcaaattatt 63765 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,207,991 Number of Sequences: 3902068 Number of extensions: 2207991 Number of successful extensions: 39213 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39184 Number of HSP's gapped (non-prelim): 29 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)