ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
2dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
3dbj|AK099384.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
4dbj|AK067794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
5dbj|AK060181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
6gb|BT017259.1| Zea mays clone EL01N0308F02.c mRNA sequence 107 2e-20
7gb|BT024068.1| Zea mays clone EL01N0450B05 mRNA sequence 107 2e-20
8gb|AY106092.1| Zea mays PCO125244 mRNA sequence 107 2e-20
9ref|XM_516859.1| PREDICTED: Pan troglodytes similar to hypotheti... 44 0.28
10ref|NM_178824.3| Homo sapiens WD repeat domain 49 (WDR49), mRNA 44 0.28
11ref|NM_001006862.1| Xenopus tropicalis cellular retinoic acid bi... 44 0.28
12gb|BC076971.1| Xenopus tropicalis cellular retinoic acid binding... 44 0.28
13gb|BC035512.2| Homo sapiens WD repeat domain 49, mRNA (cDNA clon... 44 0.28
14dbj|AK097556.1| Homo sapiens cDNA FLJ40237 fis, clone TESTI2023414 44 0.28
15gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cance... 44 0.28
16emb|CR855423.2| Xenopus tropicalis finished cDNA, clone TNeu059b11 44 0.28
17gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome... 40 4.4
18emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chr... 40 4.4
19gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, c... 40 4.4
20gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromos... 40 4.4 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  151 bits (76), Expect = 2e-33
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                           
Query: 162     ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 221
               ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 8327352 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 8327293

                                                                           
Query: 222     acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 281
               || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 8327292 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 8327233

                                             
Query: 282     gngttcacgttgaattttntcacccccaaa 311
               | |||||||||||||||  |||||||||||
Sbjct: 8327232 gtgttcacgttgaatttcctcacccccaaa 8327203
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0603C10
          Length = 187620

 Score =  151 bits (76), Expect = 2e-33
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                          
Query: 162    ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 221
              ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 120857 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 120798

                                                                          
Query: 222    acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 281
              || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 120797 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 120738

                                            
Query: 282    gngttcacgttgaattttntcacccccaaa 311
              | |||||||||||||||  |||||||||||
Sbjct: 120737 gtgttcacgttgaatttcctcacccccaaa 120708
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>dbj|AK099384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076F23, full
            insert sequence
          Length = 4575

 Score =  151 bits (76), Expect = 2e-33
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                        
Query: 162  ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 221
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 4268 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 4209

                                                                        
Query: 222  acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 281
            || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 4208 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 4149

                                          
Query: 282  gngttcacgttgaattttntcacccccaaa 311
            | |||||||||||||||  |||||||||||
Sbjct: 4148 gtgttcacgttgaatttcctcacccccaaa 4119
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>dbj|AK067794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116E07, full
            insert sequence
          Length = 4614

 Score =  151 bits (76), Expect = 2e-33
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                        
Query: 162  ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 221
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 4268 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 4209

                                                                        
Query: 222  acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 281
            || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 4208 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 4149

                                          
Query: 282  gngttcacgttgaattttntcacccccaaa 311
            | |||||||||||||||  |||||||||||
Sbjct: 4148 gtgttcacgttgaatttcctcacccccaaa 4119
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>dbj|AK060181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B12, full
            insert sequence
          Length = 2085

 Score =  151 bits (76), Expect = 2e-33
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                        
Query: 162  ccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgccatg 221
            ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1724 ccgaacaggcgcattttctcagccacaacagctttcattgcttccttagcagatgccatg 1665

                                                                        
Query: 222  acctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacctcc 281
            || |||| |||||| || |||||| | || || || |  ||||||||||| |||||||||
Sbjct: 1664 acatgaatcaggtccttttctggccttttaagggattcaaggtagctgtttcggacctcc 1605

                                          
Query: 282  gngttcacgttgaattttntcacccccaaa 311
            | |||||||||||||||  |||||||||||
Sbjct: 1604 gtgttcacgttgaatttcctcacccccaaa 1575
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>gb|BT017259.1| Zea mays clone EL01N0308F02.c mRNA sequence
          Length = 638

 Score =  107 bits (54), Expect = 2e-20
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                       
Query: 159 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 218
           ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 352 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 293

                                                                       
Query: 219 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 278
           || ||||||| || ||| || ||||||||  |||| |||  |||||||||||| || |||
Sbjct: 292 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 233

                                           
Query: 279 tccgngttcacgttgaattttntcacccccaa 310
           || | |||||| ||||||||| |||| |||||
Sbjct: 232 tcggtgttcacattgaattttctcacgcccaa 201
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>gb|BT024068.1| Zea mays clone EL01N0450B05 mRNA sequence
          Length = 2636

 Score =  107 bits (54), Expect = 2e-20
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 218
            ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 2349 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 2290

                                                                        
Query: 219  atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 278
            || ||||||| || ||| || ||||||||  |||| |||  |||||||||||| || |||
Sbjct: 2289 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 2230

                                            
Query: 279  tccgngttcacgttgaattttntcacccccaa 310
            || | |||||| ||||||||| |||| |||||
Sbjct: 2229 tcggtgttcacattgaattttctcacgcccaa 2198
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>gb|AY106092.1| Zea mays PCO125244 mRNA sequence
          Length = 931

 Score =  107 bits (54), Expect = 2e-20
 Identities = 127/152 (83%)
 Strand = Plus / Minus

                                                                       
Query: 159 gatccgaagaggcgcatcttctctgccacaacagctttcattgcttccttagcggatgcc 218
           ||||| || ||||||| ||||||||| ||||||||||||||||| || ||||| || |||
Sbjct: 616 gatccaaacaggcgcagcttctctgctacaacagctttcattgcctctttagcagacgcc 557

                                                                       
Query: 219 atgacctgaaccaggtctttctctggcttcttgagtgactgcaggtagctgttgcggacc 278
           || ||||||| || ||| || ||||||||  |||| |||  |||||||||||| || |||
Sbjct: 556 atcacctgaatcaagtccttttctggctttctgagggacgccaggtagctgttccgaacc 497

                                           
Query: 279 tccgngttcacgttgaattttntcacccccaa 310
           || | |||||| ||||||||| |||| |||||
Sbjct: 496 tcggtgttcacattgaattttctcacgcccaa 465
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>ref|XM_516859.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ33620
            (LOC460832), mRNA
          Length = 2856

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 110  ttgctggcttcacttttcattg 131
            ||||||||||||||||||||||
Sbjct: 1187 ttgctggcttcacttttcattg 1166
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>ref|NM_178824.3| Homo sapiens WD repeat domain 49 (WDR49), mRNA
          Length = 2672

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 110 ttgctggcttcacttttcattg 131
           ||||||||||||||||||||||
Sbjct: 731 ttgctggcttcacttttcattg 710
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>ref|NM_001006862.1| Xenopus tropicalis cellular retinoic acid binding protein 2
           (crabp2), mRNA
          Length = 2584

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 tggtggagtgttgctggcttca 121
           ||||||||||||||||||||||
Sbjct: 704 tggtggagtgttgctggcttca 683
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>gb|BC076971.1| Xenopus tropicalis cellular retinoic acid binding protein 2, mRNA
           (cDNA clone MGC:89469 IMAGE:6991700), complete cds
          Length = 2584

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 tggtggagtgttgctggcttca 121
           ||||||||||||||||||||||
Sbjct: 704 tggtggagtgttgctggcttca 683
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>gb|BC035512.2| Homo sapiens WD repeat domain 49, mRNA (cDNA clone MGC:34766
           IMAGE:5199615), complete cds
          Length = 2672

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 110 ttgctggcttcacttttcattg 131
           ||||||||||||||||||||||
Sbjct: 731 ttgctggcttcacttttcattg 710
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>dbj|AK097556.1| Homo sapiens cDNA FLJ40237 fis, clone TESTI2023414
          Length = 2065

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 110  ttgctggcttcacttttcattg 131
            ||||||||||||||||||||||
Sbjct: 1629 ttgctggcttcacttttcattg 1608
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>gb|AC117425.3| Homo sapiens 3 BAC RP11-297I8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143620

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 110   ttgctggcttcacttttcattg 131
             ||||||||||||||||||||||
Sbjct: 90539 ttgctggcttcacttttcattg 90560
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>emb|CR855423.2| Xenopus tropicalis finished cDNA, clone TNeu059b11
          Length = 2482

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 tggtggagtgttgctggcttca 121
           ||||||||||||||||||||||
Sbjct: 613 tggtggagtgttgctggcttca 592
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>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ttgctggcttcacttttcat 129
              ||||||||||||||||||||
Sbjct: 116727 ttgctggcttcacttttcat 116708
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>emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chromosome 13q32.1-32.3
             Contains part of the ABCC4 gene for ATP-binding cassette,
             sub-family C (CFTR/MRP), member 4, complete sequence
          Length = 182485

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    catgcaacacctaatggtggagtg 109
             |||||||||||||||| |||||||
Sbjct: 67702 catgcaacacctaatgctggagtg 67679
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>gb|AC069454.22| Homo sapiens chromosome 17, clone RP11-708H21, complete sequence
          Length = 104901

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   ctttctctggcttcttgagt 254
             ||||||||||||||||||||
Sbjct: 90027 ctttctctggcttcttgagt 90008
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>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete
              sequence
          Length = 197416

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     acacctaatggtggagtgtt 111
              ||||||||||||||||||||
Sbjct: 127158 acacctaatggtggagtgtt 127139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,398,769
Number of Sequences: 3902068
Number of extensions: 2398769
Number of successful extensions: 40835
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40802
Number of HSP's gapped (non-prelim): 28
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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