ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DBP10_YARLI (Q6C7X8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-) 28 4.9
2DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycos... 28 8.3

>DBP10_YARLI (Q6C7X8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 926

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 46  VVPISKLPAPVTFSTRAGRTKSQHNLSWATWVPKTHDFSFEL 171
           V+  S  P+P  F  R GRT    N  WA  + K +D  + L
Sbjct: 464 VINYSLPPSPKVFIHRVGRTARAGNRGWAYSIIKDNDIPYLL 505



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>DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycosylase-related|
           protein DME)
          Length = 1729

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +2

Query: 8   YLGHKKLIFSGXRLFPSPSCLHQLL-----SQH--VLGAQNPNITYRGQ 133
           +L H+  + +G +L+ SP+ +HQL+      QH  ++  Q P    RGQ
Sbjct: 309 FLNHQTCLPAGNQLYGSPTDMHQLVMSTGGQQHGLLIKNQQPGSLIRGQ 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,365,989
Number of Sequences: 219361
Number of extensions: 550226
Number of successful extensions: 1363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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