ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC169675.2| Mus musculus BAC clone RP24-200J3 from chromosome... 44 0.19
2gb|AC171111.2| Mus musculus BAC clone RP24-131J20 from chromosom... 44 0.19
3ref|XM_966645.1| PREDICTED: Tribolium castaneum similar to CG137... 42 0.76
4gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosom... 40 3.0
5emb|AL355589.8| Human DNA sequence from clone RP11-168F17 on chr... 40 3.0
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
7gb|AC158498.3| Medicago truncatula chromosome 2 BAC clone mth2-6... 40 3.0
8dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
9gb|AC006952.6|AC006952 Homo sapiens chromosome 9, clone hRPK.374... 40 3.0
10gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complet... 40 3.0

>gb|AC169675.2| Mus musculus BAC clone RP24-200J3 from chromosome 17, complete sequence
          Length = 171242

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 53     ccatctccaagctgcctgcacc 74
              ||||||||||||||||||||||
Sbjct: 151620 ccatctccaagctgcctgcacc 151599



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>gb|AC171111.2| Mus musculus BAC clone RP24-131J20 from chromosome 17, complete
             sequence
          Length = 167872

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 53    ccatctccaagctgcctgcacc 74
             ||||||||||||||||||||||
Sbjct: 93907 ccatctccaagctgcctgcacc 93886



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>ref|XM_966645.1| PREDICTED: Tribolium castaneum similar to CG13758-PA (LOC660414),
           mRNA
          Length = 1284

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 71  caccagttactttctcaacac 91
           |||||||||||||||||||||
Sbjct: 732 caccagttactttctcaacac 752



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>gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosome 9, complete sequence
          Length = 194871

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     taggtcacaaaaagttgatt 31
              ||||||||||||||||||||
Sbjct: 111821 taggtcacaaaaagttgatt 111840



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>emb|AL355589.8| Human DNA sequence from clone RP11-168F17 on chromosome 9 Contains a
             CpG island, complete sequence
          Length = 143499

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    agctgcctgcaccagttactttct 85
             ||||| ||||||||||||||||||
Sbjct: 98400 agctgtctgcaccagttactttct 98377



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 54       catctccaagctgcctgcac 73
                ||||||||||||||||||||
Sbjct: 22294741 catctccaagctgcctgcac 22294722



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>gb|AC158498.3| Medicago truncatula chromosome 2 BAC clone mth2-65n13, complete
             sequence
          Length = 124573

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gttcttatttaggtcacaaa 22
             ||||||||||||||||||||
Sbjct: 17595 gttcttatttaggtcacaaa 17614



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>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1267B06
          Length = 156989

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    catctccaagctgcctgcac 73
             ||||||||||||||||||||
Sbjct: 53385 catctccaagctgcctgcac 53366



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>gb|AC006952.6|AC006952 Homo sapiens chromosome 9, clone hRPK.374_B_16, complete sequence
          Length = 219345

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   agctgcctgcaccagttactttct 85
            ||||| ||||||||||||||||||
Sbjct: 8163 agctgtctgcaccagttactttct 8140



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>gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complete sequence
          Length = 153629

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    taggtcacaaaaagttgatt 31
             ||||||||||||||||||||
Sbjct: 11748 taggtcacaaaaagttgatt 11767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,744,597
Number of Sequences: 3902068
Number of extensions: 1744597
Number of successful extensions: 31972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31954
Number of HSP's gapped (non-prelim): 18
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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