ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intr... 78 9e-12
2gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 1.9
3tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 1.9
4gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome... 38 7.7
5ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.7
6gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 38 7.7
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.7
8gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 38 7.7
9gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, comple... 38 7.7
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
11gb|U48854.2|MMU48854 Mus musculus dystroglycan 1 (DAG1) gene, ex... 38 7.7
12dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.7

>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1067

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 89  gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc 139
           ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattc 882



 Score = 38.2 bits (19), Expect = 7.7
 Identities = 33/37 (89%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                 
Query: 1    aattctcaaaccccaacaactngnacaacatcacatt 37
            ||||||||||||||| |||||   |||||||||||||
Sbjct: 1002 aattctcaaaccccaccaactt-cacaacatcacatt 967



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>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete
              sequence
          Length = 222430

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     tctgaaccaaacaacatgac 115
              ||||||||||||||||||||
Sbjct: 111593 tctgaaccaaacaacatgac 111574



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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      tctgaaccaaacaacatgac 115
               ||||||||||||||||||||
Sbjct: 1893522 tctgaaccaaacaacatgac 1893503



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>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence
          Length = 171426

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     ttctcaaaccccaacaact 21
             |||||||||||||||||||
Sbjct: 64364 ttctcaaaccccaacaact 64346



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>ref|XM_469430.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 91   ttcgatctgaaccaaacaa 109
            |||||||||||||||||||
Sbjct: 1565 ttcgatctgaaccaaacaa 1547



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>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    ttcgatctgaaccaaacaa 109
             |||||||||||||||||||
Sbjct: 62069 ttcgatctgaaccaaacaa 62051



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 91       ttcgatctgaaccaaacaa 109
                |||||||||||||||||||
Sbjct: 27926341 ttcgatctgaaccaaacaa 27926323



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>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    ttcgatctgaaccaaacaa 109
             |||||||||||||||||||
Sbjct: 98685 ttcgatctgaaccaaacaa 98703



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>gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, complete sequence
          Length = 136793

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    acattatattacagatagt 51
             |||||||||||||||||||
Sbjct: 44551 acattatattacagatagt 44569



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 91       ttcgatctgaaccaaacaa 109
                |||||||||||||||||||
Sbjct: 28017665 ttcgatctgaaccaaacaa 28017647



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>gb|U48854.2|MMU48854 Mus musculus dystroglycan 1 (DAG1) gene, exons 1 and 2 and complete
            cds
          Length = 15889

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    ttctcaaaccccaacaact 21
            |||||||||||||||||||
Sbjct: 8767 ttctcaaaccccaacaact 8749



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>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full
            insert sequence
          Length = 1586

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 91   ttcgatctgaaccaaacaa 109
            |||||||||||||||||||
Sbjct: 1567 ttcgatctgaaccaaacaa 1549


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,017,930
Number of Sequences: 3902068
Number of extensions: 1017930
Number of successful extensions: 66841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66779
Number of HSP's gapped (non-prelim): 61
length of query: 159
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 137
effective length of database: 17,147,199,772
effective search space: 2349166368764
effective search space used: 2349166368764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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