| Clone Name | rbags24g17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA, complete cds Length = 1067 Score = 77.8 bits (39), Expect = 9e-12 Identities = 48/51 (94%) Strand = Plus / Minus Query: 89 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc 139 ||||||||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattc 882 Score = 38.2 bits (19), Expect = 7.7 Identities = 33/37 (89%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 1 aattctcaaaccccaacaactngnacaacatcacatt 37 ||||||||||||||| ||||| ||||||||||||| Sbjct: 1002 aattctcaaaccccaccaactt-cacaacatcacatt 967
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tctgaaccaaacaacatgac 115 |||||||||||||||||||| Sbjct: 111593 tctgaaccaaacaacatgac 111574
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 tctgaaccaaacaacatgac 115 |||||||||||||||||||| Sbjct: 1893522 tctgaaccaaacaacatgac 1893503
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence Length = 171426 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ttctcaaaccccaacaact 21 ||||||||||||||||||| Sbjct: 64364 ttctcaaaccccaacaact 64346
>ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ttcgatctgaaccaaacaa 109 ||||||||||||||||||| Sbjct: 1565 ttcgatctgaaccaaacaa 1547
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ttcgatctgaaccaaacaa 109 ||||||||||||||||||| Sbjct: 62069 ttcgatctgaaccaaacaa 62051
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ttcgatctgaaccaaacaa 109 ||||||||||||||||||| Sbjct: 27926341 ttcgatctgaaccaaacaa 27926323
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 ttcgatctgaaccaaacaa 109 ||||||||||||||||||| Sbjct: 98685 ttcgatctgaaccaaacaa 98703
>gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, complete sequence Length = 136793 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 acattatattacagatagt 51 ||||||||||||||||||| Sbjct: 44551 acattatattacagatagt 44569
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ttcgatctgaaccaaacaa 109 ||||||||||||||||||| Sbjct: 28017665 ttcgatctgaaccaaacaa 28017647
>gb|U48854.2|MMU48854 Mus musculus dystroglycan 1 (DAG1) gene, exons 1 and 2 and complete cds Length = 15889 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ttctcaaaccccaacaact 21 ||||||||||||||||||| Sbjct: 8767 ttctcaaaccccaacaact 8749
>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full insert sequence Length = 1586 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 ttcgatctgaaccaaacaa 109 ||||||||||||||||||| Sbjct: 1567 ttcgatctgaaccaaacaa 1549 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,017,930 Number of Sequences: 3902068 Number of extensions: 1017930 Number of successful extensions: 66841 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66779 Number of HSP's gapped (non-prelim): 61 length of query: 159 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 137 effective length of database: 17,147,199,772 effective search space: 2349166368764 effective search space used: 2349166368764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)